Glencoe Software

Repositories

• raw2ometiff

  Raw format to OME-TIFF converter
  Java GPL-2.0 3 5 1 1 Updated May 20, 2020

• bioformats2raw

  Bio-Formats image file format to raw format converter
  Java GPL-2.0 8 7 3 2 Updated May 20, 2020

• isyntax2raw

  iSyntax to raw format converter
  Python BSD-3-Clause 4 1 1 1 Updated May 19, 2020

• ome-omero-roitool

  OME and OMERO ROI tool
  Java GPL-2.0 3 1 4 3 Updated May 15, 2020

• jxrlib
  C 5 8 2 2 Updated May 11, 2020

• omero-user-token

  OMERO user token
  Python BSD-3-Clause 1 0 0 0 Updated May 8, 2020

• omero-ms-image-region

  OMERO image region Vert.x asynchronous microservice server
  Java GPL-2.0 6 0 2 4 Updated May 7, 2020

• isyntax2ometiff

  Docker container for converting files from .isyntax into .ome.tiff
  Dockerfile BSD-3-Clause 0 0 0 0 Updated May 7, 2020

• omero-ms-pixel-buffer

  OMERO pixel buffer Vert.x asynchronous microservice server
  Java GPL-2.0 6 2 0 1 Updated Apr 28, 2020

• omero-ms-thumbnail

  OMERO thumbnail Vert.x asynchronous microservice server
  Java GPL-2.0 8 0 0 2 Updated Apr 28, 2020

• omero-ms-core

  OMERO Vert.x microservice core
  Java GPL-2.0 5 1 1 0 Updated Apr 28, 2020

• cidre

  Forked from smithk/cidre

  A general illumination correction method for optical microscopy.
  Java 15 2 0 0 Updated Apr 28, 2020

• tiff2raw

  TIFF to raw format converter
  Python GPL-2.0 0 0 0 0 Updated Apr 28, 2020

• n5-zarr

  Forked from saalfeldlab/n5-zarr

  Zarr filesystem backend for N5
  Java BSD-2-Clause 4 0 0 0 Updated Apr 24, 2020

• omero-ldaptool

  Command line tool for working with OMERO and LDAP
  Java GPL-2.0 0 0 0 0 Updated Apr 2, 2020

• omero-ms-backbone

  Experimental OMERO/Vertx/Microservice Tight Integration
  Java GPL-2.0 4 0 0 2 Updated Jan 28, 2020

• openmicroscopy

  Forked from ome/openmicroscopy

  OME (Open Microscopy Environment) develops open-source software and data format standards for the storage and manipulation of biological light microscopy data. A joint project between universities, research establishments and industry in Europe and the USA, OME has over 20 active researchers with strong links to the microscopy community. Funded …
  Java GPL-2.0 99 0 1 4 Updated Jan 22, 2020

• jmx_exporter

  Forked from prometheus/jmx_exporter

  A process for exposing JMX Beans via HTTP for Prometheus consumption
  Java Apache-2.0 661 0 0 0 Updated Sep 18, 2019

• CellProfiler

  Forked from CellProfiler/CellProfiler

  An open-source application for biological image analysis
  Python 234 0 0 0 Updated Oct 31, 2018

• omero-user-scripts

  Forked from ome/omero-user-scripts

  Plugins for OMERO
  Python GPL-2.0 40 3 0 3 Updated Mar 12, 2018

• omero-client-exp

  OMERO client object experiment
  Java GPL-2.0 0 0 0 0 Updated Feb 12, 2018

• corgi

  Cool Organisation Redmine GitHub Integration
  Python BSD-2-Clause 4 1 0 3 Updated Jan 25, 2018

• cadmus-rename-script

  Renames exported supplementary material assets based on Cadmus XML metadata
  PowerShell BSD-2-Clause 0 0 0 0 Updated Oct 20, 2017

• ome-help

  Forked from ome/ome-help

  OME Project User Guides
  HTML 17 0 0 0 Updated Sep 6, 2017

• webinar-notebooks

  Jupyter notebooks from our OMERO Plus for High Content Screening & Analysis webinar
  Jupyter Notebook GPL-2.0 4 8 0 0 Updated May 5, 2017

• watchdog

  Forked from gorakhargosh/watchdog

  Python library and shell utilities to monitor filesystem events.
  Python 504 0 0 0 Updated Apr 29, 2017

• bioformats

  Forked from ome/bioformats

  Bio-Formats is a Java library for reading and writing data in life sciences image file formats. It is developed by the Open Microscopy Environment (particularly UW-Madison LOCI and Glencoe Software). Bio-Formats is released under the GNU General Public License (GPL); commercial licenses are available from Glencoe Software.
  Java GPL-2.0 208 0 0 1 Updated Apr 27, 2017

• omero-reader

  Pure Python implementation of python-bioformats reader API using OMERO
  Python GPL-2.0 1 1 0 0 Updated Dec 20, 2016

• omero-es

  OMERO Elasticsearch utilities
  Python 0 1 0 0 Updated Nov 29, 2016

• video.js

  Forked from videojs/video.js

  Video.js - open source HTML5 & Flash video player
  JavaScript 6,446 0 0 0 Updated Aug 28, 2014