Skip to content

HTTPS clone URL

Subversion checkout URL

You can clone with HTTPS or Subversion.

Download ZIP
Commits on Oct 11, 2013
Commits on Oct 10, 2013
  1. @joelarmstrong
  2. @joelarmstrong
Commits on Oct 4, 2013
  1. @ngannguyen
Commits on Oct 2, 2013
  1. @ngannguyen
Commits on Oct 1, 2013
  1. @joelarmstrong
  2. @joelarmstrong
  3. fix typo in error message

    authored
Commits on Sep 30, 2013
  1. @ngannguyen
  2. Merge branch 'development' into lod

    authored
    Conflicts:
    	lod/halLodInterpolate.py
    	lod/impl/halLodExtractMain.cpp
Commits on Sep 29, 2013
  1. add missing includes

    authored
  2. change step parameter to scale in halLodExtract. this way different s…

    authored
    …ubtrees can get different steps
  3. @ngannguyen
Commits on Sep 27, 2013
  1. @ngannguyen

    Fixed indexing bug

    ngannguyen authored
Commits on Sep 26, 2013
  1. @ngannguyen
Commits on Sep 10, 2013
  1. @ngannguyen

    Fix track labeling

    ngannguyen authored
Commits on Aug 30, 2013
  1. @ngannguyen

    Added conservation track

    ngannguyen authored
Commits on Aug 13, 2013
  1. change recursive traversal in columnIterator and mappedSegment to not…

    authored
    … visit paralogy edges when parent genome is not within scope. thus hopefully correcting a longstanding bug.
Commits on Jul 26, 2013
  1. fix bug in halAlignability and halPhyloPMain where more than the tota…

    authored
    …l length could be computed due to a bug in chopping into sequence coordinates
Commits on Jul 24, 2013
  1. @ngannguyen
  2. Revert "pass inmemory option throught hal2maf"

    authored
    This reverts commit 6af7c4a.
  3. @joelarmstrong

    fix metadata rewrite bug

    joelarmstrong authored
  4. merge phyloP

    authored
  5. fix bug with how refbed gets passed. refactor to not use recursive ca…

    authored
    …lls for tree traversal. parallelize bigwig generation
  6. add refbed option

    authored
Something went wrong with that request. Please try again.