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@gmarcais gmarcais released this Jul 13, 2019 · 1 commit to master since this release

  • Fix bug with smaller k-mers

  • Code is now dual licensed BSD3 / GPL3

  • Proper handling of DOS line ending

  • Added min, max, jaccard merging switches

  • Fixed compilation warnings/errors with gcc-5, gcc-8 and clang

In addition to the source code jellyfish-2.3.0.tar.gz, we provide a Linux static binary.

Assets 4

@gmarcais gmarcais released this May 1, 2018 · 442 commits to master since this release

This is an update to version 1 of Jellyfish. It does not bring any new features, only fixes to compile on newer environment.

In addition to the source release jellyfish-1.1.12.tar.gz, we provide binaries for linux and for macosx.

Assets 5

@gmarcais gmarcais released this May 1, 2018 · 19 commits to master since this release

  • Fix compilation on Mac (aligned_alloc)
  • Fixed script installation without autoconf/automake. Provide setup.py, extconf.rb and Makefile.PL in distribution.

In addition to the source distribution jellyfish-2.2.10.tar.gz, we provide static binaries for linux and macosx.

Assets 5

@gmarcais gmarcais released this Mar 7, 2018 · 29 commits to master since this release

Fixes bugs in compilation / testing:

  • better detection on powerpc
  • fixed bug in testing on powerpc and arm architectures
Assets 4

@gmarcais gmarcais released this Mar 7, 2018 · 35 commits to master since this release

  • 'jellyfish' Python module renamed 'dna-jellyfish' to avoid collision with another package in Debian.
  • fixed compilation on cygwin.
  • fixed bug with k=7 or 8.
Assets 4

@gmarcais gmarcais released this Nov 10, 2017 · 45 commits to master since this release

  • Read sequence from SAM/BAM/CRAM files. This feature is available if ./configure finds htslib. If pkg-config --exists htslib && echo OK prints OK, htslib is found on your system. Otherwise, adjust PKG_CONFIG_PATH.
  • Better detection of SSE support
  • Fixed Makefile in the examples directory

(Download jellyfish-2.2.7.tar.gz, NOT the automatically generate Source code file)

Assets 3

@gmarcais gmarcais released this May 25, 2016 · 73 commits to master since this release

  • Fix compilation warnings/errors with newer version of gcc (5.3 & 6.1).

(Download jellyfish-2.2.6.tar.gz, NOT the automatically generate Source code file)

Assets 3

@gmarcais gmarcais released this Mar 11, 2016 · 77 commits to master since this release

  • Fix bug in parsing function that made it stop on sequences that consist of only empty lines.
  • New methods in bindings to enumerate the mers of a string.
Assets 3

@gmarcais gmarcais released this Oct 27, 2015 · 99 commits to master since this release

Fixed many problems with the compilations of the SWIG script bindings.

Assets 3

@gmarcais gmarcais released this Sep 10, 2015 · 112 commits to master since this release

Using -Q switch with fasta file has no effect (no base is filtered out). Previously it most likely filtered out all bases.

Assets 4
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