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PyIOmica (pyiomica) is a Python package for omics analyses.
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README.md

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PyIOmica (pyiomica)

This repository contains PyIOmica, a Python package that provides bioinformatics utilities for analyzing (dynamic) omics datasets. PyIOmica extends MathIOmica usage to Python and implements new visualizations and computational tools for graph analyses.

PyIOmica Versions

  • 1.0.2 : Setup updates
  • 1.0.1 : Setup updates
  • 1.0.0 : Initial Release

PyIOmica Installation Instructions

A. INSTALLATION

Pre-Installation Requirements

 To install PyIOmica on any platform you need:
 1. Python version 3.7 or higher
 2. Recommended: 16GB of RAM or higher

Installation Instructions

  1. To install the current release from PyPI (Python Package Index) use pip:
pip install pyiomica

Alternatively, you can install directly from github using:

pip install git+https://github.com/gmiaslab/pyiomica/

B. RUNNING PyIOmica

After installation you can run:

>>> from pyiomica import pyiomica

C. DOCUMENTATION

Documentation for PyIOmica is built-in and is available through the help() functionality in Python.

D. ADDITIONAL INFORMATION

  • PyIOmica is a multi-omics analysis framework distributed as a Python package that aims to assist in bioinformatics.
  • The most current version of the package is maintained at https://github.com/gmiaslab/pyiomica
  • News are distributed via twitter (@mathiomica)

E. LICENSING

PyIOmica is released under an MIT License. Please also consult the folder LICENSES distributed with PyIOmica regarding Licensing information for use of external associated content.

F. OTHER CONTACT INFORMATION

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