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Allow generate-names to index user configurable fields for GFF3Tabix #1115

cmdcolin opened this Issue Jul 13, 2018 · 1 comment


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cmdcolin commented Jul 13, 2018

The pipeline for GFF enables using --nameAttributes to allow indexing arbitrary fields

Currently Name and ID get supported in GFF3Tabix, but should be configurable


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cmdcolin commented Aug 22, 2018

This was brought up during the call as a item of interest @enuggetry

I'd be interested in any feedback :)

We thought maybe user configurable fields to index could be stored in the conf or in the gff file itself potentially since we dont use flatfile-to-json's --nameAttributes function

cmdcolin added a commit that referenced this issue Oct 4, 2018

@cmdcolin cmdcolin added the has pullreq label Oct 4, 2018

rbuels added a commit that referenced this issue Oct 9, 2018

Merge pull request #1222 from GMOD/arbitrary_fields_tabix
Add arbitrary field indexing on gff3tabix tracks ref #1115

@rbuels rbuels closed this Oct 9, 2018

@rbuels rbuels added this to the 1.15.5 milestone Oct 9, 2018

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