Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Create a feature.get('seq') for CRAM features #1126

cmdcolin opened this Issue Jul 17, 2018 · 0 comments


None yet
2 participants
Copy link

cmdcolin commented Jul 17, 2018

The renderAlignments feature allows visualizing the read vs reference sequence in detail

It requires having the original sequence available via feature.get('seq')

This original read data is easily available in BAM but might need to be reconstituted for CRAM features

btw maybe renderAlignments can be turned on by default too :) it is hidden behind feature flag

@rbuels rbuels added this to the 1.15.1 milestone Jul 18, 2018

@rbuels rbuels self-assigned this Jul 18, 2018

@rbuels rbuels added the in progress label Jul 30, 2018

@rbuels rbuels added the has pullreq label Jul 31, 2018

@wafflebot wafflebot bot removed the in progress label Jul 31, 2018

Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
You can’t perform that action at this time.