Join GitHub today
GitHub is home to over 28 million developers working together to host and review code, manage projects, and build software together.Sign up
Error on 'Save Track Data' in HTMLVariants #800
I have a VCF file loaded as a HTMLVariants track and if I try to export GFF3 via 'Save Track Data', I get the following stack trace on the browser console:
After inspecting the stack-trace, it looks like
The issue was encountered on JBrowse 1.12.2-apollo and reproduced on JBrowse-1.12.1 as well.
VCF used: ftp://ftp.ensembl.org/pub/release-85/variation/vcf/homo_sapiens/Homo_sapiens_clinically_associated.vcf.gz
This can be fixed with a simple patch to the source
I personally think a more fully fledged gvf or vcf exporter would be nice but adding this patch would at least allow those exports to complete.