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Custom Sorting Reference Sequence #867

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wkpalan opened this Issue Mar 19, 2017 · 2 comments

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@wkpalan

wkpalan commented Mar 19, 2017

It would be good to specify an order in which reference sequences are sorted when importing, and keep the same sort order.

If this is not possible is there a way to build a custom sort function for sorting the reference sequences? I have 100+ refseqs and no easy way to sort them

@cmdcolin

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cmdcolin commented Mar 22, 2017

Technically there are a couple of sortings that can be added by default:

Sorting by name and length http://gmod.org/wiki/JBrowse_Configuration_Guide#Reference_Sequence_Display_Order

You can also, if it is really needed, have no sorting, and manually edit your refSeqs.json file to have the refseqs in the order that you want in case that is not working. There is no custom sort callback though

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cmdcolin commented Apr 28, 2017

I think if there are any issues with this feel free to post...otherwise maybe try the custom sorting of the refSeqs.json file manually :)

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