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fix gff3tabix for HTMLFeatures genes and histograms #969

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nathandunn opened this Issue Feb 1, 2018 · 2 comments

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nathandunn commented Feb 1, 2018

  • test against HTMLFeatures, as well apply current fixes to #780
    • fix retrieving feature densities
    • apply current fixes in projection from #780 and projection
      add volvox example with BigWig if not there

add volvox exmple without BigWig

adjust feature density to sane default, confirm adjustment

Based on #956

@nathandunn nathandunn self-assigned this Feb 1, 2018

@nathandunn nathandunn added this to the 1.12.4 milestone Feb 1, 2018

@nathandunn nathandunn added the ready label Feb 1, 2018

@rbuels rbuels modified the milestones: 1.12.4, 1.13.0 Feb 2, 2018

@wafflebot wafflebot bot added in progress and removed ready labels Feb 16, 2018

@nathandunn nathandunn changed the title from fix gff3tabix histogram for HTMLFeatures to fix gff3tabix histogram for genes HTMLFeatures Feb 17, 2018

@nathandunn nathandunn changed the title from fix gff3tabix histogram for genes HTMLFeatures to fix gff3tabix for HTMLFeatures genes and histograms Feb 17, 2018

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cmdcolin commented Feb 18, 2018

You might consider looking at the code here https://github.com/GMOD/jbrowse/tree/allow_gene_htmlfeatures (also referenced here #974)

This allows rendering transcript subfeatures from a parent gene

screenshot-localhost-2018 02 17-23-48-01

The current code on this branch appears to render like this

screenshot-localhost-2018 02 17-23-48-28

@rbuels rbuels modified the milestones: 1.13.0, 1.14.0 Mar 14, 2018

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rbuels commented Apr 7, 2018

I think all of this is taken care of in the dev branch now, please have a look and reopen if not

@rbuels rbuels closed this Apr 7, 2018

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