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Index GFF3Tabix track: select the feature types that you want to index #1337

merged 5 commits into from Mar 18, 2019


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loraine-gueguen commented Mar 15, 2019

Fix part of #1326

Allows you to select the feature types that you want to index for a GFF3Tabix track, by adding the track configuration parameter indexedFeatures. If there is no indexedFeatures parameter in the track configuration, all feature types are indexed, like before.

For example "indexedFeatures" : "gene,mRNA" in the track configuration in trackList.json allows you to index only gene and mRNA features. Other feature types will not be indexed.

Tested on the volvox data.


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cmdcolin commented Mar 18, 2019

This looks great! Thanks so much for adding the docs and the tests and everything

@cmdcolin cmdcolin merged commit 63906bc into GMOD:dev Mar 18, 2019

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@loraine-gueguen loraine-gueguen deleted the loraine-gueguen:indexNames_add_filter_feature_type branch Mar 18, 2019

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