From d864bed4bab5d44f258ab78ba16d22a726e91833 Mon Sep 17 00:00:00 2001 From: Alexandre Gouaillard Date: Wed, 1 Apr 2009 02:05:24 +0000 Subject: [PATCH] ENH: Merging done. git-svn-id: svn+ssh://orchestra.med.harvard.edu/svn/megason/Code/GoFigure2@1152 ef826fda-c0ae-4237-af8e-f8dcbcf7929c --- branches/ColorViewer/CMakeLists.txt | 116 -- branches/ColorViewer/Doxyfile | 316 ---- branches/ColorViewer/Examples/CMakeLists.txt | 1 - .../ColorViewer/Examples/qt/CMakeLists.txt | 7 - .../qt/QColorImagePageView/CMakeLists.txt | 8 - .../ColorImagePageView.cxx | 40 - .../qt/QColorImagePageView/TestColorWidget.ui | 272 --- .../Examples/qt/QGoLUTDialog/CMakeLists.txt | 8 - .../qt/QGoLUTDialog/qgolutdialogtest.cxx | 13 - .../Examples/qt/QImagePageView/CMakeLists.txt | 8 - .../qt/QImagePageView/ImagePageView.cxx | 43 - .../qt/QImagePageView4DTracer/CMakeLists.txt | 11 - .../ImagePageViewTracer.cxx | 16 - .../TestTracerWidget.ui | 272 --- .../qt/QImagePageViewTracer/CMakeLists.txt | 11 - .../ImagePageViewTracer.cxx | 16 - .../QImagePageViewTracer/TestTracerWidget.ui | 272 --- .../ColorViewer/ExternalCode/CMakeLists.txt | 1 - .../ExternalCode/MegaVTK/CMakeLists.txt | 7 - .../ExternalCode/MegaVTK/qt/CMakeLists.txt | 47 - .../MegaVTK/qt/Form/QImageFileDialog.ui | 294 --- .../ExternalCode/MegaVTK/qt/LUTDialog.ui | 144 -- .../MegaVTK/qt/QColorImagePageView.cxx | 737 -------- .../MegaVTK/qt/QColorImagePageView.h | 179 -- .../ExternalCode/MegaVTK/qt/QGoLUTDialog.cxx | 171 -- .../ExternalCode/MegaVTK/qt/QGoLUTDialog.h | 82 - .../MegaVTK/qt/QImagePageView.cxx | 728 -------- .../ExternalCode/MegaVTK/qt/QImagePageView.h | 184 -- .../MegaVTK/qt/QImagePageView4DTracer.cxx | 232 --- .../MegaVTK/qt/QImagePageView4DTracer.h | 99 - .../MegaVTK/qt/QImagePageViewTracer.cxx | 963 ---------- .../MegaVTK/qt/QImagePageViewTracer.h | 217 --- .../MegaVTK/qt/QSplitterchild.cxx | 60 - .../ExternalCode/MegaVTK/qt/QSplitterchild.h | 63 - .../MegaVTK/vtkItk/CMakeLists.txt | 1 - .../MegaVTK/vtkItk/itkImageToVTKImageFilter.h | 104 -- .../vtkItk/itkImageToVTKImageFilter.txx | 140 -- .../MegaVTK/vtkItk/itkVTKImageToImageFilter.h | 107 -- .../vtkItk/itkVTKImageToImageFilter.txx | 144 -- .../MegaVTK/vtkRenderingAddOn/CMakeLists.txt | 23 - .../MegaVTK/vtkRenderingAddOn/lut/Asymmetry.h | 316 ---- .../MegaVTK/vtkRenderingAddOn/lut/Flow.h | 825 -------- .../MegaVTK/vtkRenderingAddOn/lut/GEColor.h | 825 -------- .../MegaVTK/vtkRenderingAddOn/lut/HotMetal.h | 825 -------- .../MegaVTK/vtkRenderingAddOn/lut/LONI.h | 261 --- .../MegaVTK/vtkRenderingAddOn/lut/LONI2.h | 176 -- .../MegaVTK/vtkRenderingAddOn/lut/Spectrum.h | 826 -------- .../vtkFillImageWithPolyData.cxx | 547 ------ .../vtkFillImageWithPolyData.h | 130 -- .../vtkImage3DCroppingBoxCallback.cxx | 127 -- .../vtkImage3DCroppingBoxCallback.h | 107 -- .../vtkImage3DImagePlaneCallback.cxx | 248 --- .../vtkImage3DImagePlaneCallback.h | 147 -- .../vtkImageBlendWithMask.cxx | 340 ---- .../vtkRenderingAddOn/vtkImageBlendWithMask.h | 130 -- .../vtkInteractorStyleImage2D.cxx | 328 ---- .../vtkInteractorStyleImage2D.h | 119 -- .../vtkLookupTableManager.cxx | 420 ----- .../vtkRenderingAddOn/vtkLookupTableManager.h | 158 -- .../vtkOrientationAnnotation.cxx | 115 -- .../vtkOrientationAnnotation.h | 110 -- .../vtkOrientedBoxWidget.cxx | 243 --- .../vtkRenderingAddOn/vtkOrientedBoxWidget.h | 113 -- .../vtkRenderingAddOn/vtkViewColorImage.cxx | 320 ---- .../vtkRenderingAddOn/vtkViewColorImage.h | 295 --- .../vtkRenderingAddOn/vtkViewColorImage2D.cxx | 812 -------- .../vtkRenderingAddOn/vtkViewColorImage2D.h | 271 --- .../vtkViewColorImage2DCollection.cxx | 275 --- .../vtkViewColorImage2DCollection.h | 244 --- .../vtkViewColorImage2DCommand.cxx | 269 --- .../vtkViewColorImage2DCommand.h | 124 -- .../vtkRenderingAddOn/vtkViewColorImage3D.cxx | 507 ----- .../vtkRenderingAddOn/vtkViewColorImage3D.h | 300 --- .../vtkRenderingAddOn/vtkViewImage.cxx | 383 ---- .../MegaVTK/vtkRenderingAddOn/vtkViewImage.h | 340 ---- .../vtkRenderingAddOn/vtkViewImage2D.cxx | 891 --------- .../vtkRenderingAddOn/vtkViewImage2D.h | 280 --- .../vtkViewImage2DCollection.cxx | 313 ---- .../vtkViewImage2DCollection.h | 255 --- .../vtkViewImage2DCommand.cxx | 336 ---- .../vtkRenderingAddOn/vtkViewImage2DCommand.h | 127 -- .../vtkViewImage2DWithContourWidget.cxx | 249 --- .../vtkViewImage2DWithContourWidget.h | 132 -- ...ViewImage2DWithContourWidgetCollection.cxx | 423 ----- ...tkViewImage2DWithContourWidgetCollection.h | 214 --- .../vtkRenderingAddOn/vtkViewImage3D.cxx | 567 ------ .../vtkRenderingAddOn/vtkViewImage3D.h | 335 ---- .../ExternalCode/itkQt/itkQtAdaptor.h | 197 -- .../ExternalCode/itkQt/itkQtProgressBar.cxx | 132 -- .../ExternalCode/itkQt/itkQtProgressBar.h | 95 - .../qticonloader/qticonloader.cxx | 351 ---- .../ExternalCode/qticonloader/qticonloader.h | 44 - .../ColorViewer/ExternalCode/vtkLSM/lzw.h | 150 -- .../ExternalCode/vtkLSM/vtkLSMReader.cxx | 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This removes all 1.276E1265 security -# warnings. Copied from ITK CMakeLists. -IF(WIN32) - IF(NOT BORLAND) - IF(NOT CYGWIN) - IF(NOT MINGW) - ADD_DEFINITIONS( - -D_CRT_FAR_MAPPINGS_NO_DEPRECATE - -D_CRT_IS_WCTYPE_NO_DEPRECATE - -D_CRT_MANAGED_FP_NO_DEPRECATE - -D_CRT_NONSTDC_NO_DEPRECATE - -D_CRT_SECURE_NO_DEPRECATE - -D_CRT_SECURE_NO_DEPRECATE_GLOBALS - -D_CRT_SETERRORMODE_BEEP_SLEEP_NO_DEPRECATE - -D_CRT_TIME_FUNCTIONS_NO_DEPRECATE - -D_CRT_VCCLRIT_NO_DEPRECATE - -D_SCL_SECURE_NO_DEPRECATE - ) - ENDIF(NOT MINGW) - ENDIF(NOT CYGWIN) - ENDIF(NOT BORLAND) -ENDIF(WIN32) - -############################ -FIND_PACKAGE( VTK ) -IF( VTK_FOUND ) - INCLUDE( ${VTK_USE_FILE} ) - - IF( VTK_BUILD_SHARED_LIBS ) - SET(LIBS_STYLE "SHARED") - ELSE( VTK_BUILD_SHARED_LIBS ) - SET(LIBS_STYLE "STATIC") - ENDIF( VTK_BUILD_SHARED_LIBS ) - - ############################ - FIND_PACKAGE( ITK ) - IF( ITK_FOUND ) - INCLUDE( ${ITK_USE_FILE} ) - ENDIF( ITK_FOUND ) - - ############################ - # use what QVTK built with - SET(QT_QMAKE_EXECUTABLE ${VTK_QT_QMAKE_EXECUTABLE} CACHE FILEPATH "") - SET(QT_MOC_EXECUTABLE ${VTK_QT_MOC_EXECUTABLE} CACHE FILEPATH "") - SET(QT_UIC_EXECUTABLE ${VTK_QT_UIC_EXECUTABLE} CACHE FILEPATH "") - - FIND_PACKAGE(Qt4 REQUIRED) - - IF(QT_USE_FILE) - SET(QT_USE_QT3SUPPORT TRUE) - INCLUDE(${QT_USE_FILE}) - ELSE(QT_USE_FILE) - SET(QT_LIBRARIES ${QT_QT_LIBRARY}) - ENDIF(QT_USE_FILE) - - INCLUDE_DIRECTORIES( ${QT_INCLUDES} - ${QGOFIGURE_SOURCE_DIR} - ${QGOFIGURE_BINARY_DIR} - ${QGOFIGURE_SOURCE_DIR}/ExternalCode/MegaVTK/vtkItk - ${QGOFIGURE_SOURCE_DIR}/ExternalCode/MegaVTK/qt - ${QGOFIGURE_SOURCE_DIR}/ExternalCode/MegaVTK/vtkRenderingAddOn - ${QGOFIGURE_SOURCE_DIR}/ExternalCode/vtkLSM - ${QGOFIGURE_SOURCE_DIR}/ExternalCode/itkQt - ) - - SET( QGOMAINWINDOW_HDRS QGoMainWindow.h - ${QGOFIGURE_SOURCE_DIR}/ExternalCode/itkQt/itkQtAdaptor.h) - SET( QGOMAINWINDOW_SRC QGoMainWindow.cxx ) - - QT4_WRAP_UI( QGOMAINWINDOW_UI_HDRS go.ui ) - QT4_WRAP_CPP( QGOMAINWINDOW_MOC_SRC ${QGOMAINWINDOW_HDRS} ) - QT4_ADD_RESOURCES( QGOMAINWINDOW_QRC - ${QGOFIGURE_SOURCE_DIR}/resources/axes.qrc) - - SET_SOURCE_FILES_PROPERTIES( ${QGOMAINWINDOW_SRC} PROPERTIES - OBJECT_DEPENDS "${QGOMAINWINDOW_UI_HDRS}" ) - SET_SOURCE_FILES_PROPERTIES( ${QGOMAINWINDOW_MOC_SRC} PROPERTIES - OBJECT_DEPENDS "${QGOMAINWINDOW_UI_HDRS}" ) - - SUBDIRS( ExternalCode ) - SUBDIRS( Examples ) - - ADD_EXECUTABLE( gofigure - #MACOSX_BUNDLE - gofigure.cxx - ${QGOFIGURE_SOURCE_DIR}/ExternalCode/itkQt/itkQtProgressBar.cxx - ${QGOFIGURE_SOURCE_DIR}/ExternalCode/vtkLSM/vtkLSMReader.cxx - ${QGOMAINWINDOW_SRC} - ${QGOMAINWINDOW_MOC_SRC} - ${QGOMAINWINDOW_QRC} ) - - TARGET_LINK_LIBRARIES( gofigure - QMegaVTKAddOn2 - ${QT_LIBRARIES} - QVTK - ITKCommon - ITKIO - ITKBasicFilters - ITKNumerics - vtkImaging - ) - - ADD_TEST( gofigure_TEST ${CXX_TEST_PATH}/gofigure ) -ENDIF( VTK_FOUND ) - - diff --git a/branches/ColorViewer/Doxyfile b/branches/ColorViewer/Doxyfile deleted file mode 100644 index 867c7f52..00000000 --- a/branches/ColorViewer/Doxyfile +++ /dev/null @@ -1,316 +0,0 @@ -# Doxyfile 1.5.6-KDevelop - -#--------------------------------------------------------------------------- -# Project related configuration options -#--------------------------------------------------------------------------- -DOXYFILE_ENCODING = UTF-8 -PROJECT_NAME = QGO -PROJECT_NUMBER = $VERSION$ -OUTPUT_DIRECTORY = -CREATE_SUBDIRS = NO -OUTPUT_LANGUAGE = English -BRIEF_MEMBER_DESC = YES -REPEAT_BRIEF = YES -ABBREVIATE_BRIEF = "The $name class" \ - "The $name widget" \ - "The $name file" \ - is \ - provides \ - specifies \ - contains \ - represents \ - a \ - an \ - the -ALWAYS_DETAILED_SEC = NO -INLINE_INHERITED_MEMB = NO -FULL_PATH_NAMES = YES -STRIP_FROM_PATH = /home/ajg23/ -STRIP_FROM_INC_PATH = -SHORT_NAMES = NO -JAVADOC_AUTOBRIEF = NO -QT_AUTOBRIEF = NO -MULTILINE_CPP_IS_BRIEF = NO -DETAILS_AT_TOP = NO -INHERIT_DOCS = YES -SEPARATE_MEMBER_PAGES = NO -TAB_SIZE = 8 -ALIASES = -OPTIMIZE_OUTPUT_FOR_C = NO -OPTIMIZE_OUTPUT_JAVA = NO -OPTIMIZE_FOR_FORTRAN = NO -OPTIMIZE_OUTPUT_VHDL = NO -BUILTIN_STL_SUPPORT = NO -CPP_CLI_SUPPORT = NO -SIP_SUPPORT = NO -IDL_PROPERTY_SUPPORT = YES -DISTRIBUTE_GROUP_DOC = NO -SUBGROUPING = YES -TYPEDEF_HIDES_STRUCT = NO -SYMBOL_CACHE_SIZE = 0 -#--------------------------------------------------------------------------- -# Build related configuration options -#--------------------------------------------------------------------------- -EXTRACT_ALL = NO -EXTRACT_PRIVATE = NO -EXTRACT_STATIC = NO -EXTRACT_LOCAL_CLASSES = YES -EXTRACT_LOCAL_METHODS = NO -EXTRACT_ANON_NSPACES = NO -HIDE_UNDOC_MEMBERS = NO -HIDE_UNDOC_CLASSES = NO -HIDE_FRIEND_COMPOUNDS = NO -HIDE_IN_BODY_DOCS = NO -INTERNAL_DOCS = NO -CASE_SENSE_NAMES = YES -HIDE_SCOPE_NAMES = NO -SHOW_INCLUDE_FILES = YES -INLINE_INFO = YES -SORT_MEMBER_DOCS = YES -SORT_BRIEF_DOCS = NO -SORT_GROUP_NAMES = NO -SORT_BY_SCOPE_NAME = NO -GENERATE_TODOLIST = YES -GENERATE_TESTLIST = YES -GENERATE_BUGLIST = YES -GENERATE_DEPRECATEDLIST= YES -ENABLED_SECTIONS = -MAX_INITIALIZER_LINES = 30 -SHOW_USED_FILES = YES -SHOW_DIRECTORIES = NO -SHOW_FILES = YES -SHOW_NAMESPACES = YES -FILE_VERSION_FILTER = -#--------------------------------------------------------------------------- -# configuration options related to warning and progress messages -#--------------------------------------------------------------------------- -QUIET = NO -WARNINGS = YES -WARN_IF_UNDOCUMENTED = YES -WARN_IF_DOC_ERROR = YES -WARN_NO_PARAMDOC = NO -WARN_FORMAT = "$file:$line: $text" -WARN_LOGFILE = -#--------------------------------------------------------------------------- -# configuration options related to the input files -#--------------------------------------------------------------------------- -INPUT = /home/ajg23/SVNROOT/Code/gelas/trunk/experimental/go -INPUT_ENCODING = UTF-8 -FILE_PATTERNS = *.c \ - *.cc \ - *.cxx \ - *.cpp \ - *.c++ \ - *.d \ - *.java \ - *.ii \ - *.ixx \ - *.ipp \ - *.i++ \ - *.inl \ - *.h \ - 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= YES -USE_HTAGS = NO -VERBATIM_HEADERS = YES -#--------------------------------------------------------------------------- -# configuration options related to the alphabetical class index -#--------------------------------------------------------------------------- -ALPHABETICAL_INDEX = NO -COLS_IN_ALPHA_INDEX = 5 -IGNORE_PREFIX = -#--------------------------------------------------------------------------- -# configuration options related to the HTML output -#--------------------------------------------------------------------------- -GENERATE_HTML = YES -HTML_OUTPUT = html -HTML_FILE_EXTENSION = .html -HTML_HEADER = -HTML_FOOTER = -HTML_STYLESHEET = -HTML_ALIGN_MEMBERS = YES -GENERATE_HTMLHELP = NO -GENERATE_DOCSET = NO -DOCSET_FEEDNAME = "Doxygen generated docs" -DOCSET_BUNDLE_ID = org.doxygen.Project -HTML_DYNAMIC_SECTIONS = NO -CHM_FILE = -HHC_LOCATION = -QTHELP_FILE = -QTHELP_CONFIG = -DOXYGEN2QTHELP_LOC = -GENERATE_CHI = NO -CHM_INDEX_ENCODING = -BINARY_TOC = NO -TOC_EXPAND = NO -DISABLE_INDEX = NO -ENUM_VALUES_PER_LINE = 4 -GENERATE_TREEVIEW = NONE -TREEVIEW_WIDTH = 250 -FORMULA_FONTSIZE = 10 -#--------------------------------------------------------------------------- -# configuration options related to the LaTeX output -#--------------------------------------------------------------------------- -GENERATE_LATEX = YES -LATEX_OUTPUT = latex -LATEX_CMD_NAME = latex -MAKEINDEX_CMD_NAME = makeindex -COMPACT_LATEX = NO -PAPER_TYPE = a4wide -EXTRA_PACKAGES = -LATEX_HEADER = -PDF_HYPERLINKS = YES -USE_PDFLATEX = YES -LATEX_BATCHMODE = NO -LATEX_HIDE_INDICES = NO -#--------------------------------------------------------------------------- -# configuration options related to the RTF output -#--------------------------------------------------------------------------- -GENERATE_RTF = NO -RTF_OUTPUT = rtf -COMPACT_RTF = NO -RTF_HYPERLINKS = NO -RTF_STYLESHEET_FILE = -RTF_EXTENSIONS_FILE = -#--------------------------------------------------------------------------- -# configuration options related to the man page output -#--------------------------------------------------------------------------- -GENERATE_MAN = NO -MAN_OUTPUT = man -MAN_EXTENSION = .3 -MAN_LINKS = NO -#--------------------------------------------------------------------------- -# configuration options related to the XML output -#--------------------------------------------------------------------------- -GENERATE_XML = yes -XML_OUTPUT = xml -XML_SCHEMA = -XML_DTD = -XML_PROGRAMLISTING = YES -#--------------------------------------------------------------------------- -# configuration options for the AutoGen Definitions output -#--------------------------------------------------------------------------- -GENERATE_AUTOGEN_DEF = NO -#--------------------------------------------------------------------------- -# configuration options related to the Perl module output -#--------------------------------------------------------------------------- -GENERATE_PERLMOD = NO -PERLMOD_LATEX = NO -PERLMOD_PRETTY = YES -PERLMOD_MAKEVAR_PREFIX = -#--------------------------------------------------------------------------- -# Configuration options related to the preprocessor -#--------------------------------------------------------------------------- -ENABLE_PREPROCESSING = YES -MACRO_EXPANSION = NO -EXPAND_ONLY_PREDEF = NO -SEARCH_INCLUDES = YES -INCLUDE_PATH = -INCLUDE_FILE_PATTERNS = -PREDEFINED = -EXPAND_AS_DEFINED = -SKIP_FUNCTION_MACROS = YES -#--------------------------------------------------------------------------- -# Configuration::additions related to external references -#--------------------------------------------------------------------------- -TAGFILES = -GENERATE_TAGFILE = QGO.tag -ALLEXTERNALS = NO -EXTERNAL_GROUPS = YES -PERL_PATH = /usr/bin/perl -#--------------------------------------------------------------------------- -# Configuration options related to the dot tool -#--------------------------------------------------------------------------- -CLASS_DIAGRAMS = YES -MSCGEN_PATH = -HIDE_UNDOC_RELATIONS = YES -HAVE_DOT = NO -DOT_FONTNAME = FreeSans -DOT_FONTPATH = -CLASS_GRAPH = YES -COLLABORATION_GRAPH = YES -GROUP_GRAPHS = YES -UML_LOOK = NO -TEMPLATE_RELATIONS = NO -INCLUDE_GRAPH = YES -INCLUDED_BY_GRAPH = YES -CALL_GRAPH = NO -CALLER_GRAPH = NO -GRAPHICAL_HIERARCHY = YES -DIRECTORY_GRAPH = YES -DOT_IMAGE_FORMAT = png -DOT_PATH = -DOTFILE_DIRS = -DOT_GRAPH_MAX_NODES = 50 -MAX_DOT_GRAPH_DEPTH = 1000 -DOT_TRANSPARENT = YES -DOT_MULTI_TARGETS = NO -GENERATE_LEGEND = YES -DOT_CLEANUP = YES -#--------------------------------------------------------------------------- -# Configuration::additions related to the search engine -#--------------------------------------------------------------------------- -SEARCHENGINE = NO diff --git a/branches/ColorViewer/Examples/CMakeLists.txt b/branches/ColorViewer/Examples/CMakeLists.txt deleted file mode 100644 index 921465ec..00000000 --- a/branches/ColorViewer/Examples/CMakeLists.txt +++ /dev/null @@ -1 +0,0 @@ -SUBDIRS( qt ) diff --git a/branches/ColorViewer/Examples/qt/CMakeLists.txt b/branches/ColorViewer/Examples/qt/CMakeLists.txt deleted file mode 100644 index 82d838a4..00000000 --- a/branches/ColorViewer/Examples/qt/CMakeLists.txt +++ /dev/null @@ -1,7 +0,0 @@ -SUBDIRS( - QColorImagePageView - QImagePageView - QImagePageViewTracer - QImagePageView4DTracer - QGoLUTDialog - ) diff --git a/branches/ColorViewer/Examples/qt/QColorImagePageView/CMakeLists.txt b/branches/ColorViewer/Examples/qt/QColorImagePageView/CMakeLists.txt deleted file mode 100644 index ac495f3b..00000000 --- a/branches/ColorViewer/Examples/qt/QColorImagePageView/CMakeLists.txt +++ /dev/null @@ -1,8 +0,0 @@ -ADD_EXECUTABLE( ColorImagePageView ColorImagePageView.cxx ) -TARGET_LINK_LIBRARIES( ColorImagePageView - QMegaVTKAddOn2 - ITKCommon - ITKIO - ITKBasicFilters - ITKNumerics -) diff --git a/branches/ColorViewer/Examples/qt/QColorImagePageView/ColorImagePageView.cxx b/branches/ColorViewer/Examples/qt/QColorImagePageView/ColorImagePageView.cxx deleted file mode 100644 index 856ddb55..00000000 --- a/branches/ColorViewer/Examples/qt/QColorImagePageView/ColorImagePageView.cxx +++ /dev/null @@ -1,40 +0,0 @@ -#include - -#include -#include -#include -#include - -#include - -#include "itkImageToVTKImageFilter.h" -#include "QColorImagePageView.h" - -int main( int argc, char** argv ) -{ - const unsigned int Dimension = 3; - typedef itk::RGBPixel< unsigned char > PixelType; - typedef itk::Image< PixelType, Dimension > ImageType; - typedef itk::ImageFileReader< ImageType > ImageReaderType; - typedef ImageReaderType::Pointer ImageReaderPointer; - - ImageReaderPointer reader = ImageReaderType::New(); - reader->SetFileName( argv[1] ); - reader->Update( ); - - typedef itk::ImageToVTKImageFilter< ImageType > ITKVTKConnectorType; - ITKVTKConnectorType::Pointer connector = ITKVTKConnectorType::New(); - connector->SetInput( reader->GetOutput() ); - connector->Update(); - - vtkImageData* image = connector->GetOutput(); - - QApplication app(argc, argv); - QColorImagePageView form; - form.SetImage( image ); - form.SetBackgroundColor( 0., 0., 0. ); - app.setMainWidget( &form ); - form.show( ); - - return app.exec(); -} diff --git a/branches/ColorViewer/Examples/qt/QColorImagePageView/TestColorWidget.ui b/branches/ColorViewer/Examples/qt/QColorImagePageView/TestColorWidget.ui deleted file mode 100644 index bb1d700b..00000000 --- a/branches/ColorViewer/Examples/qt/QColorImagePageView/TestColorWidget.ui +++ /dev/null @@ -1,272 +0,0 @@ - - Form - - - - 0 - 0 - 1434 - 829 - - - - Form - - - - - 10 - 180 - 131 - 111 - - - - Transform - - - true - - - false - - - - - 10 - 20 - 94 - 23 - - - - Translation - - - true - - - - - - 10 - 40 - 94 - 23 - - - - Rotation - - - - - - 10 - 60 - 94 - 23 - - - - Scaling - - - - - - 10 - 80 - 94 - 23 - - - - Copy - - - - - - - 10 - 0 - 131 - 71 - - - - Tracer - - - true - - - - - 10 - 40 - 94 - 23 - - - - Free Line - - - - - - 10 - 20 - 94 - 23 - - - - Polygon - - - true - - - - - - - 10 - 340 - 131 - 101 - - - - Label - - - - - 10 - 60 - 91 - 27 - - - - Validate - - - - - - 10 - 20 - 73 - 29 - - - - - - - Id - - - - - - - - - - - - 90 - 20 - 31 - 27 - - - - - - - - - - - 10 - 80 - 131 - 91 - - - - Edit - - - true - - - false - - - - - 10 - 20 - 94 - 23 - - - - Insert Node - - - true - - - - - - 10 - 40 - 101 - 23 - - - - Delete Node - - - - - - 10 - 60 - 94 - 23 - - - - Move Node - - - - - - - 10 - 300 - 131 - 27 - - - - Add Contour - - - - - - diff --git a/branches/ColorViewer/Examples/qt/QGoLUTDialog/CMakeLists.txt b/branches/ColorViewer/Examples/qt/QGoLUTDialog/CMakeLists.txt deleted file mode 100644 index 1b68aec9..00000000 --- a/branches/ColorViewer/Examples/qt/QGoLUTDialog/CMakeLists.txt +++ /dev/null @@ -1,8 +0,0 @@ -ADD_EXECUTABLE( qgolutdialog qgolutdialogtest.cxx ) -TARGET_LINK_LIBRARIES( qgolutdialog - QMegaVTKAddOn2 - ITKCommon - ITKIO - ITKBasicFilters - ITKNumerics - ) diff --git a/branches/ColorViewer/Examples/qt/QGoLUTDialog/qgolutdialogtest.cxx b/branches/ColorViewer/Examples/qt/QGoLUTDialog/qgolutdialogtest.cxx deleted file mode 100644 index 0ab1f67d..00000000 --- a/branches/ColorViewer/Examples/qt/QGoLUTDialog/qgolutdialogtest.cxx +++ /dev/null @@ -1,13 +0,0 @@ -#include -#include "QGoLUTDialog.h" - -int main( int argc, char** argv ) -{ - QApplication app(argc, argv); - QGoLUTDialog lut; - - app.setMainWidget( &lut ); - lut.show( ); - - return app.exec(); -} diff --git a/branches/ColorViewer/Examples/qt/QImagePageView/CMakeLists.txt b/branches/ColorViewer/Examples/qt/QImagePageView/CMakeLists.txt deleted file mode 100644 index 098f47fe..00000000 --- a/branches/ColorViewer/Examples/qt/QImagePageView/CMakeLists.txt +++ /dev/null @@ -1,8 +0,0 @@ -ADD_EXECUTABLE( ImagePageView ImagePageView.cxx ) -TARGET_LINK_LIBRARIES( ImagePageView - QMegaVTKAddOn2 - ITKCommon - ITKIO - ITKBasicFilters - ITKNumerics -) diff --git a/branches/ColorViewer/Examples/qt/QImagePageView/ImagePageView.cxx b/branches/ColorViewer/Examples/qt/QImagePageView/ImagePageView.cxx deleted file mode 100644 index 8677b77a..00000000 --- a/branches/ColorViewer/Examples/qt/QImagePageView/ImagePageView.cxx +++ /dev/null @@ -1,43 +0,0 @@ -#include - -#include -#include -#include - -#include - -#include "itkImageToVTKImageFilter.h" -#include "QImagePageView.h" - -int main( int argc, char** argv ) -{ - const unsigned int Dimension = 3; - typedef unsigned char PixelType; - typedef itk::Image< PixelType, Dimension > ImageType; - - typedef itk::ImageFileReader< ImageType > ImageReaderType; - typedef ImageReaderType::Pointer ImageReaderPointer; - - ImageReaderPointer reader = ImageReaderType::New(); - reader->SetFileName( argv[1] ); - reader->Update( ); - - typedef itk::ImageToVTKImageFilter< ImageType > ITKVTKConnectorType; - ITKVTKConnectorType::Pointer connector = ITKVTKConnectorType::New(); - connector->SetInput( reader->GetOutput() ); - connector->Update(); - - vtkImageData* image = connector->GetOutput(); - // image->SetExtent( 0, size[0], 0, size[1], 0, size[2] ); - - QApplication app(argc, argv); - QImagePageView form; - form.SetImage( image ); - form.SetBackgroundColor( 0., 0., 0. ); -// form.FullScreenView2(); - app.setMainWidget( &form ); - form.show( ); - //form.SetView4ToVolumeRenderingMode(); - - return app.exec(); -} diff --git a/branches/ColorViewer/Examples/qt/QImagePageView4DTracer/CMakeLists.txt b/branches/ColorViewer/Examples/qt/QImagePageView4DTracer/CMakeLists.txt deleted file mode 100644 index 3c65dc92..00000000 --- a/branches/ColorViewer/Examples/qt/QImagePageView4DTracer/CMakeLists.txt +++ /dev/null @@ -1,11 +0,0 @@ -ADD_EXECUTABLE( ImagePageViewTracer - ImagePageViewTracer.cxx - ../../../ExternalCode/vtkLSM/vtkLSMReader.cxx - ) -TARGET_LINK_LIBRARIES( ImagePageViewTracer - QMegaVTKAddOn2 - ITKCommon - ITKIO - ITKBasicFilters - ITKNumerics -) diff --git a/branches/ColorViewer/Examples/qt/QImagePageView4DTracer/ImagePageViewTracer.cxx b/branches/ColorViewer/Examples/qt/QImagePageView4DTracer/ImagePageViewTracer.cxx deleted file mode 100644 index f07e7147..00000000 --- a/branches/ColorViewer/Examples/qt/QImagePageView4DTracer/ImagePageViewTracer.cxx +++ /dev/null @@ -1,16 +0,0 @@ -#include - -#include "QImagePageView4DTracer.h" - -int main( int argc, char** argv ) -{ - QApplication app(argc, argv); - QImagePageView4DTracer form; - form.setMinimumSize( 800, 600 ); - form.SetFileName( argv[1] ); - form.SetColorVizu( 0 ); - app.setMainWidget( &form ); - form.show( ); - - return app.exec(); -} diff --git a/branches/ColorViewer/Examples/qt/QImagePageView4DTracer/TestTracerWidget.ui b/branches/ColorViewer/Examples/qt/QImagePageView4DTracer/TestTracerWidget.ui deleted file mode 100644 index bb1d700b..00000000 --- a/branches/ColorViewer/Examples/qt/QImagePageView4DTracer/TestTracerWidget.ui +++ /dev/null @@ -1,272 +0,0 @@ - - Form - - - - 0 - 0 - 1434 - 829 - - - - Form - - - - - 10 - 180 - 131 - 111 - - - - Transform - - - true - - - false - - - - - 10 - 20 - 94 - 23 - - - - Translation - - - true - - - - - - 10 - 40 - 94 - 23 - - - - Rotation - - - - - - 10 - 60 - 94 - 23 - - - - Scaling - - - - - - 10 - 80 - 94 - 23 - - - - Copy - - - - - - - 10 - 0 - 131 - 71 - - - - Tracer - - - true - - - - - 10 - 40 - 94 - 23 - - - - Free Line - - - - - - 10 - 20 - 94 - 23 - - - - Polygon - - - true - - - - - - - 10 - 340 - 131 - 101 - - - - Label - - - - - 10 - 60 - 91 - 27 - - - - Validate - - - - - - 10 - 20 - 73 - 29 - - - - - - - Id - - - - - - - - - - - - 90 - 20 - 31 - 27 - - - - - - - - - - - 10 - 80 - 131 - 91 - - - - Edit - - - true - - - false - - - - - 10 - 20 - 94 - 23 - - - - Insert Node - - - true - - - - - - 10 - 40 - 101 - 23 - - - - Delete Node - - - - - - 10 - 60 - 94 - 23 - - - - Move Node - - - - - - - 10 - 300 - 131 - 27 - - - - Add Contour - - - - - - diff --git a/branches/ColorViewer/Examples/qt/QImagePageViewTracer/CMakeLists.txt b/branches/ColorViewer/Examples/qt/QImagePageViewTracer/CMakeLists.txt deleted file mode 100644 index 3c65dc92..00000000 --- a/branches/ColorViewer/Examples/qt/QImagePageViewTracer/CMakeLists.txt +++ /dev/null @@ -1,11 +0,0 @@ -ADD_EXECUTABLE( ImagePageViewTracer - ImagePageViewTracer.cxx - ../../../ExternalCode/vtkLSM/vtkLSMReader.cxx - ) -TARGET_LINK_LIBRARIES( ImagePageViewTracer - QMegaVTKAddOn2 - ITKCommon - ITKIO - ITKBasicFilters - ITKNumerics -) diff --git a/branches/ColorViewer/Examples/qt/QImagePageViewTracer/ImagePageViewTracer.cxx b/branches/ColorViewer/Examples/qt/QImagePageViewTracer/ImagePageViewTracer.cxx deleted file mode 100644 index f07e7147..00000000 --- a/branches/ColorViewer/Examples/qt/QImagePageViewTracer/ImagePageViewTracer.cxx +++ /dev/null @@ -1,16 +0,0 @@ -#include - -#include "QImagePageView4DTracer.h" - -int main( int argc, char** argv ) -{ - QApplication app(argc, argv); - QImagePageView4DTracer form; - form.setMinimumSize( 800, 600 ); - form.SetFileName( argv[1] ); - form.SetColorVizu( 0 ); - app.setMainWidget( &form ); - form.show( ); - - return app.exec(); -} diff --git a/branches/ColorViewer/Examples/qt/QImagePageViewTracer/TestTracerWidget.ui b/branches/ColorViewer/Examples/qt/QImagePageViewTracer/TestTracerWidget.ui deleted file mode 100644 index bb1d700b..00000000 --- a/branches/ColorViewer/Examples/qt/QImagePageViewTracer/TestTracerWidget.ui +++ /dev/null @@ -1,272 +0,0 @@ - - Form - - - - 0 - 0 - 1434 - 829 - - - - Form - - - - - 10 - 180 - 131 - 111 - - - - Transform - - - true - - - false - - - - - 10 - 20 - 94 - 23 - - - - Translation - - - true - - - - - - 10 - 40 - 94 - 23 - - - - Rotation - - - - - - 10 - 60 - 94 - 23 - - - - Scaling - - - - - - 10 - 80 - 94 - 23 - - - - Copy - - - - - - - 10 - 0 - 131 - 71 - - - - Tracer - - - true - - - - - 10 - 40 - 94 - 23 - - - - Free Line - - - - - - 10 - 20 - 94 - 23 - - - - Polygon - - - true - - - - - - - 10 - 340 - 131 - 101 - - - - Label - - - - - 10 - 60 - 91 - 27 - - - - Validate - - - - - - 10 - 20 - 73 - 29 - - - - - - - Id - - - - - - - - - - - - 90 - 20 - 31 - 27 - - - - - - - - - - - 10 - 80 - 131 - 91 - - - - Edit - - - true - - - false - - - - - 10 - 20 - 94 - 23 - - - - Insert Node - - - true - - - - - - 10 - 40 - 101 - 23 - - - - Delete Node - - - - - - 10 - 60 - 94 - 23 - - - - Move Node - - - - - - - 10 - 300 - 131 - 27 - - - - Add Contour - - - - - - diff --git a/branches/ColorViewer/ExternalCode/CMakeLists.txt b/branches/ColorViewer/ExternalCode/CMakeLists.txt deleted file mode 100644 index 53352e8f..00000000 --- a/branches/ColorViewer/ExternalCode/CMakeLists.txt +++ /dev/null @@ -1 +0,0 @@ -SUBDIRS( MegaVTK ) diff --git a/branches/ColorViewer/ExternalCode/MegaVTK/CMakeLists.txt b/branches/ColorViewer/ExternalCode/MegaVTK/CMakeLists.txt deleted file mode 100644 index 2f99dcd3..00000000 --- a/branches/ColorViewer/ExternalCode/MegaVTK/CMakeLists.txt +++ /dev/null @@ -1,7 +0,0 @@ -SUBDIRS( qt ) -SUBDIRS( vtkItk ) -SUBDIRS( vtkRenderingAddOn ) - - - - diff --git a/branches/ColorViewer/ExternalCode/MegaVTK/qt/CMakeLists.txt b/branches/ColorViewer/ExternalCode/MegaVTK/qt/CMakeLists.txt deleted file mode 100644 index ffee7e0f..00000000 --- a/branches/ColorViewer/ExternalCode/MegaVTK/qt/CMakeLists.txt +++ /dev/null @@ -1,47 +0,0 @@ -SET( QMegaVTKAddOn_NAME2 - QGoLUTDialog - QColorImagePageView - QImagePageView - QImagePageViewTracer - QImagePageView4DTracer - QSplitterchild - ) - -SET( QMegaVTKAddOn_SRC2 - QGoLUTDialog.cxx - QColorImagePageView.cxx - QImagePageView.cxx - QImagePageViewTracer.cxx - QImagePageView4DTracer.cxx - QSplitterchild.cxx - ) - -FOREACH( src ${QMegaVTKAddOn_NAME2} ) - QT4_WRAP_CPP( ${src}_MOC_SRC2 ${src}.h ) -ENDFOREACH( src ) - -ADD_LIBRARY( QMegaVTKAddOn2 - ${LIBS_STYLE} - ${QGoLUTDialog_MOC_SRC2} - ${QImagePageView_MOC_SRC2} - ${QImagePageViewTracer_MOC_SRC2} - ${QColorImagePageView_MOC_SRC2} - ${QMegaVTKAddOn_SRC2} - ${QImagePageView4DTracer_MOC_SRC2} - ${QSplitterchild_MOC_SRC2} - ) - -SET( QMegaVTKAddOn2_LIBS - QMegaVTKAddOn2 - vtkRenderingAddOn2 - QVTK - ${QT_LIBRARIES} - ) - -TARGET_LINK_LIBRARIES( QMegaVTKAddOn2 - ${QMegaVTKAddOn2_LIBS} - ) - -INSTALL_TARGETS(/lib QMegaVTKAddOn2) - -INSTALL_FILES(/include "(\\.h|\\.txx)$") diff --git a/branches/ColorViewer/ExternalCode/MegaVTK/qt/Form/QImageFileDialog.ui b/branches/ColorViewer/ExternalCode/MegaVTK/qt/Form/QImageFileDialog.ui deleted file mode 100644 index 51d3ae2e..00000000 --- a/branches/ColorViewer/ExternalCode/MegaVTK/qt/Form/QImageFileDialog.ui +++ /dev/null @@ -1,294 +0,0 @@ - - Form - - - - 0 - 0 - 776 - 491 - - - - Form - - - - - -1 - -1 - 491 - 461 - - - - - - - - - - 100 - 150 - - - - - - - - Qt::Vertical - - - - 20 - 17 - - - - - - - - - - Size - - - - - - - Qt::Horizontal - - - - 20 - 20 - - - - - - - - true - - - QAbstractSpinBox::NoButtons - - - - - - - QAbstractSpinBox::NoButtons - - - - - - - false - - - true - - - true - - - QAbstractSpinBox::NoButtons - - - - - - - Qt::Horizontal - - - - 98 - 20 - - - - - - - - Spacing - - - - - - - Qt::Horizontal - - - - 20 - 20 - - - - - - - - true - - - QAbstractSpinBox::NoButtons - - - - - - - QAbstractSpinBox::NoButtons - - - - - - - false - - - true - - - true - - - QAbstractSpinBox::NoButtons - - - - - - - Qt::Horizontal - - - - 98 - 20 - - - - - - - - Origin - - - - - - - Qt::Horizontal - - - - 20 - 20 - - - - - - - - true - - - QAbstractSpinBox::NoButtons - - - - - - - QAbstractSpinBox::NoButtons - - - - - - - false - - - true - - - true - - - QAbstractSpinBox::NoButtons - - - - - - - Qt::Horizontal - - - - 98 - 20 - - - - - - - - - - Qt::Vertical - - - - 20 - 18 - - - - - - - - - - Additional -Information - - - - - - - - - - - - - - - - QVTKWidget - QWidget -
QVTKWidget.h
- - - - - diff --git a/branches/ColorViewer/ExternalCode/MegaVTK/qt/LUTDialog.ui b/branches/ColorViewer/ExternalCode/MegaVTK/qt/LUTDialog.ui deleted file mode 100644 index cadd530f..00000000 --- a/branches/ColorViewer/ExternalCode/MegaVTK/qt/LUTDialog.ui +++ /dev/null @@ -1,144 +0,0 @@ - - LUTDialog - - - - 0 - 0 - 321 - 203 - - - - Dialog - - - - - 10 - 50 - 301 - 100 - - - - - - - 10 - 10 - 301 - 28 - - - - - - - Lookup Table - - - - - - - Qt::RightToLeft - - - false - - - false - - - -1 - - - true - - - - - - - - - 11 - 161 - 298 - 28 - - - - - - - Qt::Horizontal - - - - 166 - 20 - - - - - - - - Qt::Horizontal - - - QDialogButtonBox::Cancel|QDialogButtonBox::Ok - - - false - - - - - - - - - QVTKWidget - QWidget -
QVTKWidget.h
- - - - - - buttonBox - accepted() - LUTDialog - accept() - - - 248 - 254 - - - 157 - 274 - - - - - buttonBox - rejected() - LUTDialog - reject() - - - 316 - 260 - - - 286 - 274 - - - - - diff --git a/branches/ColorViewer/ExternalCode/MegaVTK/qt/QColorImagePageView.cxx b/branches/ColorViewer/ExternalCode/MegaVTK/qt/QColorImagePageView.cxx deleted file mode 100644 index 02343ec8..00000000 --- a/branches/ColorViewer/ExternalCode/MegaVTK/qt/QColorImagePageView.cxx +++ /dev/null @@ -1,737 +0,0 @@ -/*========================================================================= - Author: The GoFigure Dev. Team. - while at Megason Lab, Systems biology, Harvard Medical school, 2009 - - Copyright (c) 2009, President and Fellows of Harvard College. - All rights reserved. - - Redistribution and use in source and binary forms, with or without - modification, are permitted provided that the following conditions are met: - - Redistributions of source code must retain the above copyright notice, - this list of conditions and the following disclaimer. - Redistributions in binary form must reproduce the above copyright notice, - this list of conditions and the following disclaimer in the documentation - and/or other materials provided with the distribution. - Neither the name of the President and Fellows of Harvard College - nor the names of its contributors may be used to endorse or promote - products derived from this software without specific prior written - permission. - - THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS - "AS IS" AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, - THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR - PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT OWNER OR CONTRIBUTORS - BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, - OR CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT - OF SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR PROFITS; - OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, - WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE - OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF - ADVISED OF THE POSSIBILITY OF SUCH DAMAGE. - - =========================================================================*/ - -#include "QColorImagePageView.h" -#include "QSplitterchild.h" - -#include -#include -#include -#include -#include -#include - -#include -#include -#include -#include -#include - -#include -#include -#include -#include -#include - -#include - -#include -#include -#include -#include - -QColorImagePageView::QColorImagePageView( QWidget* parent ) : QWidget( parent ) -{ - IsFullScreen = 0; - SnapshotId = 1; - - Tag = QString( "QColorImagePageView" ); - Image = 0; - - Pool = vtkViewColorImage2DCollection::New(); - View3D = vtkViewColorImage3D::New(); - - setupUi( this ); - QObject::connect( this->slider1, SIGNAL( valueChanged( int ) ), - this, SLOT( SetSlideView1( int ) ) ); - QObject::connect( this->slider2, SIGNAL( valueChanged( int ) ), - this, SLOT( SetSlideView2( int ) ) ); - QObject::connect( this->slider3, SIGNAL( valueChanged( int ) ), - this, SLOT( SetSlideView3( int ) ) ); - - QObject::connect( this->htSplitter, SIGNAL( splitterMoved( int, int ) ), - this->hbSplitter, SLOT( moveSplitter( int, int ) ) ); - QObject::connect(this->hbSplitter, SIGNAL( splitterMoved( int, int ) ), - this->htSplitter, SLOT( moveSplitter( int, int ) ) ); - -} - -QColorImagePageView::~QColorImagePageView() -{ - Pool->Delete(); - View3D->Delete(); -} - -void QColorImagePageView::setupUi( QWidget* parent ) -{ - if(parent->objectName().isEmpty()) - { - parent->resize(800, 800); - } - - QList< int > list_size; - list_size.push_back( 10 ); - list_size.push_back( 10 ); - - this->vSplitter = new QSplitter( Qt::Vertical, parent ); - - this->htSplitter = new QSplitterchild( this->vSplitter ); - this->hbSplitter = new QSplitterchild( this->vSplitter ); - - this->vSplitter->addWidget(this->htSplitter); - this->vSplitter->addWidget(this->hbSplitter); - this->vSplitter->setSizes( list_size ); - this->vSplitter->resize( 800, 800 ); - - this->qvtkWidget_XY = new QVTKWidget; - this->slider1 = new QSlider( Qt::Vertical ); - this->LayOut1 = new QHBoxLayout; - this->LayOut1->addWidget( this->qvtkWidget_XY ); - this->LayOut1->addWidget( this->slider1 ); - this->LayOutWidget1 = new QWidget; - this->LayOutWidget1->setLayout( this->LayOut1 ); - this->htSplitter->addWidget( this->LayOutWidget1 ); - - this->qvtkWidget_2 = new QVTKWidget; - this->slider2 = new QSlider( Qt::Vertical ); - this->LayOut2 = new QHBoxLayout; - this->LayOut2->addWidget( this->qvtkWidget_2 ); - this->LayOut2->addWidget( this->slider2 ); - this->LayOutWidget2 = new QWidget; - this->LayOutWidget2->setLayout( this->LayOut2 ); - this->hbSplitter->addWidget( this->LayOutWidget2 ); -// this->htSplitter->setSizes( list_size ); - - this->qvtkWidget_3 = new QVTKWidget; - this->slider3 = new QSlider( Qt::Vertical ); - this->LayOut3 = new QHBoxLayout; - this->LayOut3->addWidget( this->qvtkWidget_3 ); - this->LayOut3->addWidget( this->slider3 ); - this->LayOutWidget3 = new QWidget; - this->LayOutWidget3->setLayout( this->LayOut3 ); - this->htSplitter->addWidget( this->LayOutWidget3 ); - - this->qvtkWidget_XYZ = new QVTKWidget; - this->Spacer = new QSpacerItem( 27, 10, - QSizePolicy::Minimum, QSizePolicy::Minimum); - this->LayOut4 = new QHBoxLayout; - this->LayOut4->addWidget( this->qvtkWidget_XYZ ); - this->LayOut4->addItem( this->Spacer ); - this->LayOutWidget4 = new QWidget; - this->LayOutWidget4->setLayout( this->LayOut4 ); - this->hbSplitter->addWidget( this->LayOutWidget4 ); - - vtkRenderWindow* renwin4 = this->qvtkWidget_XYZ->GetRenderWindow( ); - View3D->SetRenderWindow( renwin4 ); - - retranslateUi(parent); - - QMetaObject::connectSlotsByName(parent); -} // setupUi - -void QColorImagePageView::retranslateUi(QWidget *parent) -{ - parent->setWindowTitle( this->Tag ); - Q_UNUSED(parent); -} - -bool QColorImagePageView::BuildScreenshotFromImage( vtkImageData* image, - vtkImageData* screenshot, - int size ) -{ - if (!image || !screenshot) - { - return false; - } - - // Empty image, remove thumbnail/screenshot - - int image_dims[3]; - image->GetDimensions(image_dims); - if (image_dims[0] == 0 || - image_dims[1] == 0 || - image_dims[2] == 0) - { - return false; - } - - double factor; - vtkImageData *resample_input, *resample_output; - - // First, let's make sure we are processing the image as it - // is by clipping its UpdateExtent. By doing so, we prevent our resample - // and permute filter the process the image's *whole* extent. - - vtkImageClip *clip = vtkImageClip::New(); - clip->SetInput(image); - clip->SetOutputWholeExtent(image->GetUpdateExtent()); - clip->Update(); - - // Permute, as a convenience - - int clip_dims[3]; - clip->GetOutput()->GetDimensions(clip_dims); - - vtkImagePermute *permute = NULL; - if (clip_dims[2] != 1) - { - permute = vtkImagePermute::New(); - permute->SetInput(clip->GetOutput()); - if (clip_dims[0] == 1) - { - permute->SetFilteredAxes(1, 2, 0); - } - else - { - permute->SetFilteredAxes(0, 2, 1); - } - resample_input = permute->GetOutput(); - } - else - { - resample_input = clip->GetOutput(); - } - - resample_input->Update(); - int resample_input_dims[3];//, resample_output_dims[3]; - - resample_input->GetDimensions(resample_input_dims); - double *resample_input_spacing = resample_input->GetSpacing(); - - int large_dim = 0, small_dim = 1; - if (resample_input_dims[0] < resample_input_dims[1]) - { - large_dim = 1; - small_dim = 0; - } - - if( size != 0 ) - { - vtkImageResample *resample = vtkImageResample::New(); - resample->SetInput(resample_input); - resample->SetInterpolationModeToCubic(); - resample->SetDimensionality(2); - - // Create the screenshot - - factor = static_cast< double >( size ) / - static_cast< double >( resample_input_dims[large_dim] ); - - resample->SetAxisMagnificationFactor(large_dim, factor); - resample->SetAxisMagnificationFactor( - small_dim, factor * (resample_input_spacing[small_dim] / - resample_input_spacing[large_dim])); - resample->Update(); - resample_output = resample->GetOutput(); - - screenshot->ShallowCopy( resample_output ); - resample->Delete(); - } - else - { - screenshot->ShallowCopy( resample_input ); - } - - // Deallocate - clip->Delete(); - - if( permute ) - { - permute->Delete(); - } - - return true; -} - -bool QColorImagePageView::BuildScreenshotFromRenderWindow( - vtkRenderWindow *win, - vtkImageData* screenshot, - int size ) -{ - if( win && screenshot ) - { - vtkWindowToImageFilter* filter = vtkWindowToImageFilter::New(); - filter->ShouldRerenderOff(); - filter->SetInput( win ); - filter->Update(); - bool res = this->BuildScreenshotFromImage( filter->GetOutput(), - screenshot, size ); - filter->Delete(); - return res; - } - return false; -} - -void QColorImagePageView::SnapshotView( QVTKWidget* iWidget, - const SnapshotImageType& iType, - const QString& iBaseName ) -{ - vtkImageData* image = vtkImageData::New(); - BuildScreenshotFromRenderWindow( iWidget->GetRenderWindow(), - image, 0 ); - QString filename = iBaseName; - filename.append( QString( "%1" ).arg( SnapshotId ) ); - - switch( iType ) - { - default: - case BMP: - { - filename.append( ".bmp" ); - vtkBMPWriter* bmp_writer = vtkBMPWriter::New(); - bmp_writer->SetInput( image ); - bmp_writer->SetFileName( filename.toAscii( ).constData( ) ); - bmp_writer->Write(); - bmp_writer->Delete(); - } - break; - case EPS: - { - filename.append( ".eps" ); - vtkPostScriptWriter* eps_writer = vtkPostScriptWriter::New(); - eps_writer->SetInput( image ); - eps_writer->SetFileName( filename.toAscii( ).constData( ) ); - eps_writer->Write(); - eps_writer->Delete(); - } - break; - case JPEG: - { - filename.append( ".jpeg" ); - vtkJPEGWriter* jpeg_writer = vtkJPEGWriter::New(); - jpeg_writer->SetInput( image ); - jpeg_writer->SetFileName( filename.toAscii( ).constData( ) ); - jpeg_writer->Write(); - jpeg_writer->Delete(); - } - break; - case PNG: - { - filename.append( ".png" ); - vtkPNGWriter* png_writer = vtkPNGWriter::New(); - png_writer->SetInput( image ); - png_writer->SetFileName( filename.toAscii( ).constData( ) ); - png_writer->Write(); - png_writer->Delete(); - } - break; - case TIFF: - { - filename.append( ".tiff" ); - vtkTIFFWriter* tiff_writer = vtkTIFFWriter::New(); - tiff_writer->SetInput( image ); - tiff_writer->SetFileName( filename.toAscii( ).constData( ) ); - tiff_writer->Write(); - tiff_writer->Delete(); - } - break; - } - SnapshotId++; - image->Delete(); -} - -void QColorImagePageView::SnapshotViewXY( const SnapshotImageType& iType, - const QString& iBaseName ) -{ - SnapshotView( qvtkWidget_XY, iType, iBaseName ); -} - -void QColorImagePageView::SnapshotView2( const SnapshotImageType& iType, - const QString& iBaseName ) -{ - SnapshotView( qvtkWidget_2, iType, iBaseName ); -} -void QColorImagePageView::SnapshotView3( const SnapshotImageType& iType, - const QString& iBaseName ) -{ - SnapshotView( qvtkWidget_3, iType, iBaseName ); -} -void QColorImagePageView::SnapshotViewXYZ( const SnapshotImageType& iType, - const QString& iBaseName ) -{ - SnapshotView( qvtkWidget_XYZ, iType, iBaseName ); -} - -void QColorImagePageView::SetFullScreenView( const int& iS ) -{ - if( IsFullScreen == iS ) - IsFullScreen = 0; - else - IsFullScreen = iS; - - switch( IsFullScreen ) - { - default: - case 0: - { - LayOutWidget1->show(); - LayOutWidget2->show(); - LayOutWidget3->show(); - LayOutWidget4->show(); - break; - } - case 1: - { - LayOutWidget1->show(); - LayOutWidget2->hide(); - LayOutWidget3->hide(); - LayOutWidget4->hide(); - break; - } - case 2: - { - LayOutWidget1->hide(); - LayOutWidget2->show(); - LayOutWidget3->hide(); - LayOutWidget4->hide(); - break; - } - case 3: - { - LayOutWidget1->hide(); - LayOutWidget2->hide(); - LayOutWidget3->show(); - LayOutWidget4->hide(); - break; - } - case 4: - { - LayOutWidget1->hide(); - LayOutWidget2->hide(); - LayOutWidget3->hide(); - LayOutWidget4->show(); - break; - } - } -} - -int QColorImagePageView::GetFullScreenView( ) const -{ - return IsFullScreen; -} - -double* QColorImagePageView::GetBackgroundColor() -{ - return this->Pool->GetItem( 0 )->GetBackground(); -} - -void QColorImagePageView::GetBackgroundColor( double& r, - double& g, double& b ) -{ - double* rgb = this->Pool->GetItem( 0 )->GetBackground(); - r = rgb[0]; - g = rgb[1]; - b = rgb[2]; -} - -void QColorImagePageView::SetBackgroundColor( const double& r, -const double& g, const double& b ) -{ - double textcolor[3]; - textcolor[0] = 1. - r; - textcolor[1] = 1. - g; - textcolor[2] = 1. - b; - - double rgb[3] = {r, g, b }; - - this->Pool->SyncSetBackground( rgb ); - - vtkTextProperty* property = this->Pool->GetItem( 0 )->GetTextProperty(); -// property->SetFontFamilyToArial(); -// property->SetFontSize( 14 ); - property->SetColor( textcolor ); - this->Pool->SyncSetTextProperty( property ); -} - -void QColorImagePageView::SetBackgroundColor( double rgb[3] ) -{ - double textcolor[3]; - textcolor[0] = 1. - rgb[0]; - textcolor[1] = 1. - rgb[1]; - textcolor[2] = 1. - rgb[2]; - - this->Pool->SyncSetBackground( rgb ); - - vtkTextProperty* property = this->Pool->GetItem( 0 )->GetTextProperty(); -// property->SetFontFamilyToArial(); -// property->SetFontSize( 14 ); - property->SetColor( textcolor ); - this->Pool->SyncSetTextProperty( property ); -} - -void QColorImagePageView::SetBackgroundColor( const QColor& iColor ) -{ - int r, g, b; - iColor.getRgb( &r, &g, &b ); - double rgb[3]; - rgb[0] = static_cast< double >( r ) / 255.; - rgb[1] = static_cast< double >( g ) / 255.; - rgb[2] = static_cast< double >( b ) / 255.; - - double textcolor[3]; - textcolor[0] = 1. - rgb[0]; - textcolor[1] = 1. - rgb[1]; - textcolor[2] = 1. - rgb[2]; - - this->Pool->SyncSetBackground( rgb ); - - vtkTextProperty* property = this->Pool->GetItem( 0 )->GetTextProperty(); -// property->SetFontFamilyToArial(); -// property->SetFontSize( 14 ); - property->SetColor( textcolor ); - this->Pool->SyncSetTextProperty( property ); -} - -QVTKWidget* QColorImagePageView::GetActiveQVTKWidget( ) -{ - - switch(this->IsFullScreen) - { - case 1 : - return qvtkWidget_XY; - case 2 : - return qvtkWidget_2; - case 3 : - return qvtkWidget_3; - default : - return qvtkWidget_XYZ; - } -} - - -vtkViewColorImage* QColorImagePageView::GetActiveView() -{ - switch(this->IsFullScreen) - { - case 1 : - return this->Pool->GetItem(0); - case 2 : - return this->Pool->GetItem(1); - case 3 : - return this->Pool->GetItem(2); - default : - return this->Pool->GetItem(3); - } -} - -void QColorImagePageView::SetLookupTable( vtkLookupTable* lut ) -{ -} - -void QColorImagePageView::quadview() -{ - SetFullScreenView( 0 ); -} - -void QColorImagePageView::FullScreenViewXY () -{ - SetFullScreenView( 1 ); -} - - -void QColorImagePageView::FullScreenView2( ) -{ - SetFullScreenView( 2 ); -} - - -void QColorImagePageView::FullScreenView3( ) -{ - SetFullScreenView( 3 ); -} - - -void QColorImagePageView::FullScreenViewXYZ ( ) -{ - SetFullScreenView( 4 ); -} - -void QColorImagePageView::SetView3DToTriPlanarMode() -{ - View3D->SetTriPlanarRenderingOn(); - View3D->SetVolumeRenderingOff(); - View3D->Render(); -} -// -void QColorImagePageView::SetView3DToVolumeRenderingMode() -{ - View3D->SetTriPlanarRenderingOff(); - View3D->SetVolumeRenderingOn(); - View3D->Render(); -} - -void QColorImagePageView::SetImage( vtkImageData* input ) -{ - if( !input ) - return; - else - { - this->Image = input; - - vtkViewColorImage2D* View1 = - vtkViewColorImage2D::New(); - View1->SetInput( this->Image ); - View1->SetViewConvention( vtkViewColorImage2D::VIEW_CONVENTION_NEUROLOGICAL ); - vtkRenderWindow* renwin1 = this->qvtkWidget_XY->GetRenderWindow( ); - View1->SetupInteractor( this->qvtkWidget_XY->GetInteractor() ); - View1->SetRenderWindow( renwin1 ); - View1->SetRenderer( renwin1->GetRenderers()->GetFirstRenderer() ); - View1->SetViewOrientation( vtkViewColorImage2D::VIEW_ORIENTATION_AXIAL ); - this->Pool->AddItem( View1 ); - this->View3D->Add2DPhantom( 0, View1->GetImageActor(), View1->GetSlicePlane() ); - - int *range = View1->GetSliceRange(); - - this->slider1->setMinimum( range[0] ); - this->slider1->setMaximum( range[1] ); - View1->Delete(); - - vtkViewColorImage2D* View2 = - vtkViewColorImage2D::New(); - View2->SetInput( this->Image ); - View2->SetViewConvention( vtkViewColorImage2D::VIEW_CONVENTION_NEUROLOGICAL ); - vtkRenderWindow* renwin2 = this->qvtkWidget_2->GetRenderWindow( ); - View2->SetRenderWindow( renwin2 ); - View2->SetRenderer( renwin2->GetRenderers()->GetFirstRenderer() ); - View2->SetupInteractor( this->qvtkWidget_2->GetInteractor() ); - View2->SetViewOrientation (vtkViewColorImage2D::VIEW_ORIENTATION_CORONAL); - this->Pool->AddItem( View2 ); - this->View3D->Add2DPhantom( 1, View2->GetImageActor(), View2->GetSlicePlane() ); - - range = View2->GetSliceRange(); - this->slider2->setMinimum( range[0] ); - this->slider2->setMaximum( range[1] ); - View2->Delete(); - - vtkViewColorImage2D* View3 = - vtkViewColorImage2D::New(); - View3->SetInput( this->Image ); - View3->SetViewConvention( vtkViewColorImage2D::VIEW_CONVENTION_NEUROLOGICAL ); - vtkRenderWindow* renwin3 = this->qvtkWidget_3->GetRenderWindow( ); - View3->SetRenderWindow( renwin3 ); - View3->SetRenderer( renwin3->GetRenderers()->GetFirstRenderer() ); - View3->SetupInteractor( this->qvtkWidget_3->GetInteractor() ); - View3->SetViewOrientation (vtkViewColorImage2D::VIEW_ORIENTATION_SAGITTAL); - - this->Pool->AddItem( View3 ); - this->View3D->Add2DPhantom( 2, View3->GetImageActor(), View3->GetSlicePlane() ); - - range = View3->GetSliceRange(); - this->slider3->setMinimum( range[0] ); - this->slider3->setMaximum( range[1] ); - View3->Delete(); - - int size[2] = {400, 400}; - this->Pool->SyncSetSize (size); - - vtkRenderWindow* renwin4 = this->qvtkWidget_XYZ->GetRenderWindow( ); - this->View3D->SetupInteractor( this->qvtkWidget_XYZ->GetInteractor() ); - this->View3D->SetInput( this->Image ); - this->View3D->SetVolumeRenderingOff(); - this->View3D->ResetCamera(); - this->Pool->SetExtraRenderWindow( renwin4 ); - - this->Pool->Initialize(); - this->Pool->SyncSetShowAnnotations( true ); - this->Pool->SyncSetBackground( this->Pool->GetItem(0)->GetBackground() ); - this->Pool->SyncSetTextProperty( this->Pool->GetItem(0)->GetTextProperty()); - this->Pool->SyncRender(); - this->Pool->SyncReset(); - - this->slider1->setValue( (this->slider1->minimum()+this->slider1->maximum())/2 ); - this->slider2->setValue( (this->slider2->minimum()+this->slider2->maximum())/2 ); - this->slider3->setValue( (this->slider3->minimum()+this->slider3->maximum())/2 ); - } -} - -void QColorImagePageView::SetShowAnnotations( const bool& iState ) -{ - this->Pool->SyncSetShowAnnotations( iState ); -} - -void QColorImagePageView::SetTag( const QString& iTag ) -{ - this->Tag = iTag; -} - -QString QColorImagePageView::GetTag( ) const -{ - return this->Tag; -} - -void QColorImagePageView::SetCellId( const unsigned int& iId ) -{ - this->CellId = iId; -} - -unsigned int QColorImagePageView::GetCellId() const -{ - return this->CellId; -} - -void QColorImagePageView::resizeEvent( QResizeEvent* event ) -{ - QWidget::resizeEvent( event ); - vSplitter->resize( event->size() ); -} - - -void QColorImagePageView::ValidateContour( - const int& iId, - const QColor& iColor, - const bool& iSave ) -{ -} - -void QColorImagePageView::ReinitializeContour( ) -{ -} - -void QColorImagePageView::SetSlideView1( const int& iSlice ) -{ - this->Pool->GetItem( 0 )->SetSlice( iSlice ); - this->Pool->SyncRender(); -} - -void QColorImagePageView::SetSlideView2( const int& iSlice ) -{ - this->Pool->GetItem( 1 )->SetSlice( iSlice ); - this->Pool->SyncRender(); -} - -void QColorImagePageView::SetSlideView3( const int& iSlice ) -{ - this->Pool->GetItem( 2 )->SetSlice( iSlice ); - this->Pool->SyncRender(); -} diff --git a/branches/ColorViewer/ExternalCode/MegaVTK/qt/QColorImagePageView.h b/branches/ColorViewer/ExternalCode/MegaVTK/qt/QColorImagePageView.h deleted file mode 100644 index 20c5180a..00000000 --- a/branches/ColorViewer/ExternalCode/MegaVTK/qt/QColorImagePageView.h +++ /dev/null @@ -1,179 +0,0 @@ -/*========================================================================= - Authors: Thhe GoFigure Dev. Team. - while at Megason Lab, Systems biology, Harvard Medical school, 2009 - - Copyright (c) 2009, President and Fellows of Harvard College. - All rights reserved. - - Redistribution and use in source and binary forms, with or without - modification, are permitted provided that the following conditions are met: - - Redistributions of source code must retain the above copyright notice, - this list of conditions and the following disclaimer. - Redistributions in binary form must reproduce the above copyright notice, - this list of conditions and the following disclaimer in the documentation - and/or other materials provided with the distribution. - Neither the name of the President and Fellows of Harvard College - nor the names of its contributors may be used to endorse or promote - products derived from this software without specific prior written - permission. - - THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS - "AS IS" AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, - THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR - PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT OWNER OR CONTRIBUTORS - BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, - OR CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT - OF SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR PROFITS; - OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, - WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE - OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF - ADVISED OF THE POSSIBILITY OF SUCH DAMAGE. - - =========================================================================*/ - -#ifndef __QColorImagePageView -#define __QColorImagePageView - -#include -#include -#include -#include -#include -#include -#include -#include -#include -#include - -#include - -#include "vtkViewColorImage3D.h" -#include "vtkViewColorImage2D.h" -#include "vtkViewColorImage2DCollection.h" -#include "QSplitterchild.h" - -/** -\class QColorImagePageView -*/ -class QColorImagePageView : public QWidget -{ - Q_OBJECT -public: - explicit QColorImagePageView( QWidget* parent = 0 ); - ~QColorImagePageView(); - - void SetImage( vtkImageData* input ); - - void setupUi( QWidget *Form ); - void retranslateUi(QWidget *Form); - - int GetFullScreenView( ) const; - - QVTKWidget* GetActiveQVTKWidget( ); - vtkViewColorImage* GetActiveView(); - - enum SnapshotImageType - { - BMP = 0, - EPS, - JPEG, - PNG, - TIFF - }; - - bool BuildScreenshotFromImage(vtkImageData*, vtkImageData*, int); - bool BuildScreenshotFromRenderWindow(vtkRenderWindow*, vtkImageData*, int); - void SnapshotView(QVTKWidget*, const QColorImagePageView::SnapshotImageType&, const QString&); - - void SetTag( const QString& iTag ); - QString GetTag( ) const; - - void SetCellId( const unsigned int& iId ); - unsigned int GetCellId( ) const; - - void GetBackgroundColor( double& r, double& g, double& b ); - double* GetBackgroundColor(); - -public slots: - - void SetBackgroundColor( const double& r, const double& g, const double& b ); - void SetBackgroundColor( double rgb[3] ); - void SetBackgroundColor( const QColor& iColor ); - - void SetLookupTable( vtkLookupTable* lut ); - void SetShowAnnotations( const bool& ); - void SetShowScalarBar( const bool& ) {}; - void SetColorWindow( const double& ) {}; - void SetColorLevel( const double& ) {}; - - void SetFullScreenView( const int& iS ); - void quadview(); - void FullScreenViewXY(); - void FullScreenView2(); - void FullScreenView3(); - void FullScreenViewXYZ(); - void SetView3DToTriPlanarMode(); - void SetView3DToVolumeRenderingMode(); - - void SnapshotViewXY( const SnapshotImageType& iType, - const QString& iBaseName = QString( "snapshot" ) ); - void SnapshotView2( const SnapshotImageType& iType, - const QString& iBaseName = QString( "snapshot" ) ); - void SnapshotView3( const SnapshotImageType& iType, - const QString& iBaseName = QString( "snapshot" ) ); - void SnapshotViewXYZ( const SnapshotImageType& iType, - const QString& iBaseName = QString( "snapshot" ) ); - - void SetSlideView1( const int& ); - void SetSlideView2( const int& ); - void SetSlideView3( const int& ); - - void ValidateContour( - const int& iId, - const QColor& iColor, - const bool& iSave ); - void ReinitializeContour( ); - -protected: - QSplitter* vSplitter; - QSplitterchild* htSplitter; - QSplitterchild* hbSplitter; - - QWidget* LayOutWidget1; - QHBoxLayout* LayOut1; - QSlider* slider1; - QVTKWidget* qvtkWidget_XY; - - QWidget* LayOutWidget2; - QHBoxLayout* LayOut2; - QSlider* slider2; - QVTKWidget* qvtkWidget_2; - - QWidget* LayOutWidget3; - QHBoxLayout* LayOut3; - QSlider* slider3; - QVTKWidget* qvtkWidget_3; - - QWidget* LayOutWidget4; - QHBoxLayout* LayOut4; - QVTKWidget* qvtkWidget_XYZ; - QSpacerItem* Spacer; - vtkViewColorImage3D* View3D; - - vtkImageData* Image; - - vtkViewColorImage2DCollection* Pool; - - QString Tag; - - virtual void resizeEvent( QResizeEvent* event ); - - double BackgroundRGB[3]; - - unsigned int CellId; - unsigned int SnapshotId; - int IsFullScreen; -}; - -#endif diff --git a/branches/ColorViewer/ExternalCode/MegaVTK/qt/QGoLUTDialog.cxx b/branches/ColorViewer/ExternalCode/MegaVTK/qt/QGoLUTDialog.cxx deleted file mode 100644 index 18f51f6e..00000000 --- a/branches/ColorViewer/ExternalCode/MegaVTK/qt/QGoLUTDialog.cxx +++ /dev/null @@ -1,171 +0,0 @@ -/*========================================================================= - Authors: the GoFigure Dev. Team. - while at Megason Lab, Systems biology, Harvard Medical school, 2009 - - Copyright (c) 2009, President and Fellows of Harvard College. - All rights reserved. - - Redistribution and use in source and binary forms, with or without - modification, are permitted provided that the following conditions are met: - - Redistributions of source code must retain the above copyright notice, - this list of conditions and the following disclaimer. - Redistributions in binary form must reproduce the above copyright notice, - this list of conditions and the following disclaimer in the documentation - and/or other materials provided with the distribution. - Neither the name of the President and Fellows of Harvard College - nor the names of its contributors may be used to endorse or promote - products derived from this software without specific prior written - permission. - - THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS - "AS IS" AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, - THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR - PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT OWNER OR CONTRIBUTORS - BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, - OR CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT - OF SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR PROFITS; - OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, - WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE - OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF - ADVISED OF THE POSSIBILITY OF SUCH DAMAGE. - - =========================================================================*/ - -#include "QGoLUTDialog.h" - -#include -#include -#include -#include -#include - -QGoLUTDialog::QGoLUTDialog( QWidget* parent ) : QDialog( parent ), LUT( 0 ) -{ - setupUi( this ); - - this->LUT = vtkLookupTableManager::GetBWLookupTable(); - this->Renderer = vtkRenderer::New(); - - vtkRenderWindow* renwin = this->qvtkWidget->GetRenderWindow(); - renwin->AddRenderer( this->Renderer ); - - this->LUTActor = vtkScalarBarActor::New(); - this->LUTActor->SetLookupTable( this->LUT ); - this->LUTActor->SetOrientationToHorizontal(); - this->LUTActor->SetWidth( 0.8 ); - this->LUTActor->SetHeight( 0.9 ); - this->LUTActor->SetPosition( 0.1, 0.1 ); - this->LUTActor->SetTitle( "LUT" ); - - this->Renderer->AddActor2D( this->LUTActor ); - - renwin->Render(); -} - -QGoLUTDialog::~QGoLUTDialog() -{ - this->Renderer->Delete(); - this->LUTActor->Delete(); - this->LUT->Delete(); - delete this->qvtkWidget; -} - -vtkLookupTable* QGoLUTDialog::GetLookupTable( ) -{ - return this->LUT; -} - -void QGoLUTDialog::setupUi( QDialog* LUTDialog ) -{ - if( LUTDialog->objectName().isEmpty() ) - LUTDialog->setObjectName( QString::fromUtf8("LUTDialog") ); - - LUTDialog->resize(321, 183); - LUTDialog->setMinimumSize( 200, 150 ); - LUTDialog->setModal( true ); - - this->verticalLayout = new QVBoxLayout( LUTDialog ); - this->verticalLayout->setObjectName(QString::fromUtf8("verticalLayout")); - this->verticalLayout->setContentsMargins(10, 10, 10, 10); - this->verticalLayout->setSpacing( 20 ); - - this->horizontalLayout = new QHBoxLayout; - this->horizontalLayout->setObjectName(QString::fromUtf8("horizontalLayout")); - this->horizontalLayout->setContentsMargins(0, 0, 0, 0); - - this->label = new QLabel; - this->label->setObjectName(QString::fromUtf8("label")); - this->label->setText( tr("Lookup Table") ); - - this->horizontalLayout->addWidget(label); - - this->LUTComboBox = new QComboBox; - this->LUTComboBox->setObjectName(QString::fromUtf8("LUTComboBox")); - this->LUTComboBox->setLayoutDirection(Qt::RightToLeft); - this->LUTComboBox->setAutoFillBackground(false); - this->LUTComboBox->setEditable(false); - this->LUTComboBox->setFrame(true); - - int k = 0; - this->LUTComboBox->insertItem( k++, tr( "B/W" ) ); - this->LUTComboBox->insertItem( k++, tr( "B/W Inverse" ) ); - this->LUTComboBox->insertItem( k++, tr( "Spectrum" ) ); - this->LUTComboBox->insertItem( k++, tr( "Hot Metal" ) ); - this->LUTComboBox->insertItem( k++, tr( "GE Color" ) ); - this->LUTComboBox->insertItem( k++, tr( "Flow" ) ); - this->LUTComboBox->insertItem( k++, tr( "LONI" ) ); - this->LUTComboBox->insertItem( k++, tr( "LONI2" ) ); - this->LUTComboBox->insertItem( k++, tr( "Asymmetry" ) ); - this->LUTComboBox->insertItem( k++, tr( "P-Value" ) ); - - this->horizontalLayout->addWidget(this->LUTComboBox); - - this->verticalLayout->addLayout( this->horizontalLayout ); - - this->qvtkWidget = new QVTKWidget; - this->qvtkWidget->setObjectName(QString::fromUtf8("qvtkWidget")); - this->qvtkWidget->setGeometry(QRect(10, 50, 301, 100)); - - this->verticalLayout->addWidget( this->qvtkWidget ); - - this->horizontalLayout_2 = new QHBoxLayout; - this->horizontalLayout_2->setObjectName(QString::fromUtf8("horizontalLayout_2")); - this->horizontalLayout_2->setContentsMargins(0, 0, 0, 0); - - this->horizontalSpacer = new QSpacerItem(166, 20, QSizePolicy::Expanding, QSizePolicy::Minimum); - this->horizontalLayout_2->addItem(horizontalSpacer); - - this->buttonBox = new QDialogButtonBox; - this->buttonBox->setObjectName( QString::fromUtf8("buttonBox") ); - this->buttonBox->setGeometry(QRect(60, 160, 252, 32)); - this->buttonBox->setOrientation(Qt::Horizontal); - this->buttonBox->setStandardButtons( QDialogButtonBox::Cancel | - QDialogButtonBox::Ok ); - this->buttonBox->setCenterButtons(false); - this->horizontalLayout_2->addWidget(buttonBox); - - this->verticalLayout->addLayout( this->horizontalLayout_2 ); - - LUTDialog->setLayout( this->verticalLayout ); - - QObject::connect( this->buttonBox, SIGNAL(accepted()), - LUTDialog, SLOT(accept()) ); - QObject::connect( this->buttonBox, SIGNAL(rejected()), - LUTDialog, SLOT(reject()) ); - QObject::connect( this->LUTComboBox, SIGNAL( currentIndexChanged( int ) ), - this, SLOT( ChangeLookupTable( int ) ) ); - - LUTComboBox->setCurrentIndex( 0 ); - - QMetaObject::connectSlotsByName(LUTDialog); -} - -void QGoLUTDialog::ChangeLookupTable( const int& idx ) -{ - this->LUT->Delete(); - this->LUT = vtkLookupTableManager::GetLookupTable( idx ); - this->LUTActor->SetLookupTable( this->LUT ); - - this->qvtkWidget->GetRenderWindow()->Render( ) ; -} diff --git a/branches/ColorViewer/ExternalCode/MegaVTK/qt/QGoLUTDialog.h b/branches/ColorViewer/ExternalCode/MegaVTK/qt/QGoLUTDialog.h deleted file mode 100644 index 044c7d99..00000000 --- a/branches/ColorViewer/ExternalCode/MegaVTK/qt/QGoLUTDialog.h +++ /dev/null @@ -1,82 +0,0 @@ -/*========================================================================= - Authors: The GoFigure Dev. Team. - while at Megason Lab, Systems biology, Harvard Medical school, 2009 - - Copyright (c) 2009, President and Fellows of Harvard College. - All rights reserved. - - Redistribution and use in source and binary forms, with or without - modification, are permitted provided that the following conditions are met: - - Redistributions of source code must retain the above copyright notice, - this list of conditions and the following disclaimer. - Redistributions in binary form must reproduce the above copyright notice, - this list of conditions and the following disclaimer in the documentation - and/or other materials provided with the distribution. - Neither the name of the President and Fellows of Harvard College - nor the names of its contributors may be used to endorse or promote - products derived from this software without specific prior written - permission. - - THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS - "AS IS" AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, - THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR - PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT OWNER OR CONTRIBUTORS - BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, - OR CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT - OF SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR PROFITS; - OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, - WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE - OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF - ADVISED OF THE POSSIBILITY OF SUCH DAMAGE. - - =========================================================================*/ - -#ifndef __QGoLUTDialog_h -#define __QGoLUTDialog_h - -#include -#include -#include -#include -#include -#include -#include - -#include -#include - -#include "QVTKWidget.h" - -/** - \class QGoLUTDialog - \brief Look-up Table Dialog -*/ -class QGoLUTDialog : public QDialog -{ - Q_OBJECT -public: - explicit QGoLUTDialog( QWidget* parent = 0 ); - virtual ~QGoLUTDialog(); - - vtkLookupTable* GetLookupTable( ); - -public slots: - void ChangeLookupTable( const int& ); - -protected: - vtkLookupTable* LUT; - vtkScalarBarActor* LUTActor; - vtkRenderer* Renderer; - QDialogButtonBox* buttonBox; - QVTKWidget* qvtkWidget; - QHBoxLayout* horizontalLayout; - QHBoxLayout* horizontalLayout_2; - QVBoxLayout* verticalLayout; - QSpacerItem* horizontalSpacer; - QLabel* label; - QComboBox* LUTComboBox; - - void setupUi( QDialog *LUTDialog ); -}; -#endif diff --git a/branches/ColorViewer/ExternalCode/MegaVTK/qt/QImagePageView.cxx b/branches/ColorViewer/ExternalCode/MegaVTK/qt/QImagePageView.cxx deleted file mode 100644 index c543e5e9..00000000 --- a/branches/ColorViewer/ExternalCode/MegaVTK/qt/QImagePageView.cxx +++ /dev/null @@ -1,728 +0,0 @@ -/*========================================================================= - Authors: The GoFigure Dev. Team. - while at Megason Lab, Systems biology, Harvard Medical school, 2009 - - Copyright (c) 2009, President and Fellows of Harvard College. - All rights reserved. - - Redistribution and use in source and binary forms, with or without - modification, are permitted provided that the following conditions are met: - - Redistributions of source code must retain the above copyright notice, - this list of conditions and the following disclaimer. - Redistributions in binary form must reproduce the above copyright notice, - this list of conditions and the following disclaimer in the documentation - and/or other materials provided with the distribution. - Neither the name of the President and Fellows of Harvard College - nor the names of its contributors may be used to endorse or promote - products derived from this software without specific prior written - permission. - - THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS - "AS IS" AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, - THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR - PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT OWNER OR CONTRIBUTORS - BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, - OR CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT - OF SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR PROFITS; - OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, - WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE - OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF - ADVISED OF THE POSSIBILITY OF SUCH DAMAGE. - - =========================================================================*/ - -#include "QImagePageView.h" -#include -#include -#include -#include -#include - -#include -#include -#include -#include - -#include -#include -#include -#include -#include - -QImagePageView::QImagePageView( QWidget* parent ) : QWidget( parent ) -{ - IsFullScreen = 0; - SnapshotId = 1; - - Tag = QString( "QImagePageView" ); - Image = 0; - - Pool = vtkViewImage2DCollection::New(); - View3D = vtkViewImage3D::New(); - - setupUi( this ); -} - -QImagePageView::~QImagePageView() -{ - Pool->Delete(); - View3D->Delete(); - -// delete qvtkWidget_4; -// delete qvtkWidget_3; -// delete qvtkWidget_2; -// delete qvtkWidget_1; -// -// delete htSplitter; -// delete hbSplitter; -// delete vSplitter; -} - -void QImagePageView::setupUi( QWidget* parent ) -{ - if(parent->objectName().isEmpty()) - { - parent->resize(800, 800); - } - - QList< int > list_size; - list_size.push_back( 10 ); - list_size.push_back( 10 ); - - vSplitter = new QSplitter( Qt::Vertical, parent ); - htSplitter = new QSplitter( vSplitter ); - hbSplitter = new QSplitter( vSplitter ); - vSplitter->addWidget(htSplitter); - vSplitter->addWidget(hbSplitter); - vSplitter->setSizes( list_size ); - vSplitter->resize( 800, 800 ); - - qvtkWidget_1 = new QVTKWidget; - slider1 = new QSlider( Qt::Vertical ); - LayOut1 = new QHBoxLayout; - LayOut1->addWidget( qvtkWidget_1 ); - LayOut1->addWidget( slider1 ); - LayOutWidget1 = new QWidget; - LayOutWidget1->setLayout( LayOut1 ); - htSplitter->addWidget( LayOutWidget1 ); - - qvtkWidget_2 = new QVTKWidget; - slider2 = new QSlider( Qt::Vertical ); - LayOut2 = new QHBoxLayout; - LayOut2->addWidget( qvtkWidget_2 ); - LayOut2->addWidget( slider2 ); - LayOutWidget2 = new QWidget; - LayOutWidget2->setLayout( LayOut2 ); - htSplitter->addWidget( LayOutWidget2 ); - htSplitter->setSizes( list_size ); - - qvtkWidget_3 = new QVTKWidget; - slider3 = new QSlider( Qt::Vertical ); - LayOut3 = new QHBoxLayout; - LayOut3->addWidget( qvtkWidget_3 ); - LayOut3->addWidget( slider3 ); - LayOutWidget3 = new QWidget; - LayOutWidget3->setLayout( LayOut3 ); - hbSplitter->addWidget( LayOutWidget3 ); - - qvtkWidget_4 = new QVTKWidget; - Spacer = new QSpacerItem( 27, 10, - QSizePolicy::Minimum, QSizePolicy::Minimum); - LayOut4 = new QHBoxLayout; - LayOut4->addWidget( qvtkWidget_4 ); - LayOut4->addItem( Spacer ); - LayOutWidget4 = new QWidget; - LayOutWidget4->setLayout( LayOut4 ); - hbSplitter->addWidget( LayOutWidget4 ); - hbSplitter->setSizes( list_size ); - - retranslateUi(parent); - - QMetaObject::connectSlotsByName(parent); -} // setupUi - -void QImagePageView::retranslateUi(QWidget *parent) -{ - parent->setWindowTitle( this->Tag ); - Q_UNUSED(parent); -} - -// bool QImagePageView::BuildScreenshotFromImage( vtkImageData* image, -// vtkImageData* screenshot, -// int size ) -// { -// if (!image || !screenshot) -// { -// return false; -// } -// -// // Empty image, remove thumbnail/screenshot -// -// int image_dims[3]; -// image->GetDimensions(image_dims); -// if (image_dims[0] == 0 || -// image_dims[1] == 0 || -// image_dims[2] == 0) -// { -// return false; -// } -// -// double factor; -// vtkImageData *resample_input, *resample_output; -// -// // First, let's make sure we are processing the image as it -// // is by clipping its UpdateExtent. By doing so, we prevent our resample -// // and permute filter the process the image's *whole* extent. -// -// vtkImageClip *clip = vtkImageClip::New(); -// clip->SetInput(image); -// clip->SetOutputWholeExtent(image->GetUpdateExtent()); -// clip->Update(); -// -// // Permute, as a convenience -// -// int clip_dims[3]; -// clip->GetOutput()->GetDimensions(clip_dims); -// -// vtkImagePermute *permute = NULL; -// if (clip_dims[2] != 1) -// { -// permute = vtkImagePermute::New(); -// permute->SetInput(clip->GetOutput()); -// if (clip_dims[0] == 1) -// { -// permute->SetFilteredAxes(1, 2, 0); -// } -// else -// { -// permute->SetFilteredAxes(0, 2, 1); -// } -// resample_input = permute->GetOutput(); -// } -// else -// { -// resample_input = clip->GetOutput(); -// } -// -// resample_input->Update(); -// int resample_input_dims[3];//, resample_output_dims[3]; -// -// resample_input->GetDimensions(resample_input_dims); -// double *resample_input_spacing = resample_input->GetSpacing(); -// -// int large_dim = 0, small_dim = 1; -// if (resample_input_dims[0] < resample_input_dims[1]) -// { -// large_dim = 1; -// small_dim = 0; -// } -// -// if( size != 0 ) -// { -// vtkImageResample *resample = vtkImageResample::New(); -// resample->SetInput(resample_input); -// resample->SetInterpolationModeToCubic(); -// resample->SetDimensionality(2); -// -// // Create the screenshot -// -// factor = static_cast< double >( size ) / -// static_cast< double >( resample_input_dims[large_dim] ); -// -// resample->SetAxisMagnificationFactor(large_dim, factor); -// resample->SetAxisMagnificationFactor( -// small_dim, factor * (resample_input_spacing[small_dim] / -// resample_input_spacing[large_dim])); -// resample->Update(); -// resample_output = resample->GetOutput(); -// // resample_output->GetDimensions(resample_output_dims); -// -// screenshot->ShallowCopy( resample_output ); -// // SetImage( -// // (const unsigned char*) resample_output->GetScalarPointer(), -// // resample_output_dims[0], -// // resample_output_dims[1], -// // 3, -// // 0, -// // vtkKWIcon::ImageOptionFlipVertical); -// resample->Delete(); -// } -// else -// { -// screenshot->ShallowCopy( resample_input ); -// } -// -// // Deallocate -// -// clip->Delete(); -// -// if( permute ) -// { -// permute->Delete(); -// } -// -// return true; -// } -// -// bool QImagePageView::BuildScreenshotFromRenderWindow( -// vtkRenderWindow *win, -// vtkImageData* screenshot, -// int size ) -// { -// if( win && screenshot ) -// { -// vtkWindowToImageFilter* filter = vtkWindowToImageFilter::New(); -// filter->ShouldRerenderOff(); -// filter->SetInput( win ); -// filter->Update(); -// bool res = this->BuildScreenshotFromImage( filter->GetOutput(), -// screenshot, size ); -// filter->Delete(); -// return res; -// } -// return false; -// } -/* -void QImagePageView::SnapshotView( QVTKWidget* iWidget, - const SnapshotImageType& iType, - const QString& iBaseName ) -{ - vtkImageData* image = vtkImageData::New(); - BuildScreenshotFromRenderWindow( iWidget->GetRenderWindow(), - image ); - QString filename = iBaseName; - filename.append( QString( "%1" ).arg( SnapshotId ) ); - - switch( iType ) - { - default: - case BMP: - { - filename.append( ".bmp" ); - vtkBMPWriter* bmp_writer = vtkBMPWriter::New(); - bmp_writer->SetInput( image ); - bmp_writer->SetFileName( filename.toAscii( ).constData( ) ); - bmp_writer->Write(); - bmp_writer->Delete(); - } - break; - case EPS: - { - filename.append( ".eps" ); - vtkPostScriptWriter* eps_writer = vtkPostScriptWriter::New(); - eps_writer->SetInput( image ); - eps_writer->SetFileName( filename.toAscii( ).constData( ) ); - eps_writer->Write(); - eps_writer->Delete(); - } - break; - case JPEG: - { - filename.append( ".jpeg" ); - vtkJPEGWriter* jpeg_writer = vtkJPEGWriter::New(); - jpeg_writer->SetInput( image ); - jpeg_writer->SetFileName( filename.toAscii( ).constData( ) ); - jpeg_writer->Write(); - jpeg_writer->Delete(); - } - break; - case PNG: - { - filename.append( ".png" ); - vtkPNGWriter* png_writer = vtkPNGWriter::New(); - png_writer->SetInput( image ); - png_writer->SetFileName( filename.toAscii( ).constData( ) ); - png_writer->Write(); - png_writer->Delete(); - } - break; - case TIFF: - { - filename.append( ".tiff" ); - vtkTIFFWriter* tiff_writer = vtkTIFFWriter::New(); - tiff_writer->SetInput( image ); - tiff_writer->SetFileName( filename.toAscii( ).constData( ) ); - tiff_writer->Write(); - tiff_writer->Delete(); - } - break; - } - SnapshotId++; - image->Delete(); -} - -void QImagePageView::SnapshotView1( const SnapshotImageType& iType, - const QString& iBaseName ) -{ - SnapshotView( qvtkWidget_1, iType, iBaseName ); -} - -void QImagePageView::SnapshotView2( const SnapshotImageType& iType, - const QString& iBaseName ) -{ - SnapshotView( qvtkWidget_2, iType, iBaseName ); -} -void QImagePageView::SnapshotView3( const SnapshotImageType& iType, - const QString& iBaseName ) -{ - SnapshotView( qvtkWidget_3, iType, iBaseName ); -} -void QImagePageView::SnapshotView4( const SnapshotImageType& iType, - const QString& iBaseName ) -{ - SnapshotView( qvtkWidget_4, iType, iBaseName ); -}*/ - -void QImagePageView::SetFullScreenView( const int& iS ) -{ - if( IsFullScreen == iS ) - IsFullScreen = 0; - else - IsFullScreen = iS; - - switch( IsFullScreen ) - { - default: - case 0: - { - qvtkWidget_1->show(); - qvtkWidget_2->show(); - qvtkWidget_3->show(); - qvtkWidget_4->show(); - break; - } - case 1: - { - qvtkWidget_1->show(); - qvtkWidget_2->hide(); - qvtkWidget_3->hide(); - qvtkWidget_4->hide(); - break; - } - case 2: - { - qvtkWidget_1->hide(); - qvtkWidget_2->show(); - qvtkWidget_3->hide(); - qvtkWidget_4->hide(); - break; - } - case 3: - { - qvtkWidget_1->hide(); - qvtkWidget_2->hide(); - qvtkWidget_3->show(); - qvtkWidget_4->hide(); - break; - } - case 4: - { - qvtkWidget_1->hide(); - qvtkWidget_2->hide(); - qvtkWidget_3->hide(); - qvtkWidget_4->show(); - break; - } - } -} - -int QImagePageView::GetFullScreenView( ) const -{ - return IsFullScreen; -} -// -// void QImagePageView::Render( ) -// { -// this->View1->Render(); -// this->View2->Render(); -// this->View3->Render(); -// this->View4->Render(); -// } - -void QImagePageView::SetBackgroundColor( const double& r, -const double& g, const double& b ) -{ - double textcolor[3]; - textcolor[0] = 1. - r; - textcolor[1] = 1. - g; - textcolor[2] = 1. - b; - -// View1->SetBackground( r, g, b ); -// View1->GetTextProperty()->SetColor( textcolor ); -// -// View2->SetBackground( r, g, b ); -// View1->GetTextProperty()->SetColor( textcolor ); -// -// View3->SetBackground( r, g, b ); -// View3->GetTextProperty()->SetColor( textcolor ); -// -// View4->SetBackground( r, g, b ); -// View4->GetTextProperty()->SetColor( textcolor ); -} - -void QImagePageView::SetBackgroundColor( double rgb[3] ) -{ - double textcolor[3]; - textcolor[0] = 1. - rgb[0]; - textcolor[1] = 1. - rgb[1]; - textcolor[2] = 1. - rgb[2]; - -// View1->SetBackground( rgb[0], rgb[1], rgb[2] ); -// View1->GetTextProperty()->SetColor( textcolor ); -// -// View2->SetBackground( rgb[0], rgb[1], rgb[2] ); -// View2->GetTextProperty()->SetColor( textcolor ); -// -// View3->SetBackground( rgb[0], rgb[1], rgb[2] ); -// View3->GetTextProperty()->SetColor( textcolor ); -// -// View4->SetBackground( rgb[0], rgb[1], rgb[2] ); -// View4->GetTextProperty()->SetColor( textcolor ); -} - -void QImagePageView::SetBackgroundColor( const QColor& iColor ) -{ - int r, g, b; - iColor.getRgb( &r, &g, &b ); - double rgb[3]; - rgb[0] = static_cast< double >( r ) / 255.; - rgb[1] = static_cast< double >( g ) / 255.; - rgb[2] = static_cast< double >( b ) / 255.; - - double textcolor[3]; - textcolor[0] = 1. - rgb[0]; - textcolor[1] = 1. - rgb[1]; - textcolor[2] = 1. - rgb[2]; - -// View1->SetBackground( rgb[0], rgb[1], rgb[2] ); -// View1->GetTextProperty()->SetColor( textcolor ); -// -// View2->SetBackground( rgb[0], rgb[1], rgb[2] ); -// View2->GetTextProperty()->SetColor( textcolor ); -// -// View3->SetBackground( rgb[0], rgb[1], rgb[2] ); -// View3->GetTextProperty()->SetColor( textcolor ); -// -// View4->SetBackground( rgb[0], rgb[1], rgb[2] ); -// View4->GetTextProperty()->SetColor( textcolor ); -} - -QVTKWidget* QImagePageView::GetActiveQVTKWidget( ) -{ - - switch(this->IsFullScreen) - { - case 1 : - return qvtkWidget_1; - case 2 : - return qvtkWidget_2; - case 3 : - return qvtkWidget_3; - default : - return qvtkWidget_4; - } -} - - -vtkViewImage* QImagePageView::GetActiveView() -{ - switch(this->IsFullScreen) - { - case 1 : - return this->Pool->GetItem(0); - case 2 : - return this->Pool->GetItem(1); - case 3 : - return this->Pool->GetItem(2); - default : - return this->Pool->GetItem(3); - } -} - -void QImagePageView::SetLookupTable( vtkLookupTable* lut ) -{ - if( !lut ) - { - return; - } - else - { - this->Pool->SyncSetLookupTable( lut ); - } -} - -void QImagePageView::FullScreenView1 () -{ - SetFullScreenView( 1 ); -} - - -void QImagePageView::FullScreenView2( ) -{ - SetFullScreenView( 2 ); -} - - -void QImagePageView::FullScreenView3( ) -{ - SetFullScreenView( 3 ); -} - - -void QImagePageView::FullScreenView4 ( ) -{ - SetFullScreenView( 4 ); -} - -void QImagePageView::CreateAllViews() -{ -// ConfigureView( this->Pool->GetItem(0), qvtkWidget_1 ); -// ConfigureView( this->Pool->GetItem(1), qvtkWidget_2 ); -// ConfigureView( this->Pool->GetItem(2), qvtkWidget_3 ); -// ConfigureView( this->Pool->GetItem(3), qvtkWidget_4 ); - - this->Pool->GetItem(0)->SetBackground(0.,0.,0.); - this->Pool->GetItem(1)->SetBackground(0.,0.,0.); - this->Pool->GetItem(2)->SetBackground(0.,0.,0.); -// this->Pool->GetItem(3)->SetBackground(0.,0.,0.); - -// this->SetView4ToTriPlanarMode(); -} - -// void QImagePageView::SetView4ToTriPlanarMode() -// { -// View4->SetPlaneWidgetVisibility( true ); -// } -// -// void QImagePageView::SetView4ToVolumeRenderingMode() -// { -// View4->SetPlaneWidgetVisibility( false ); -// } - -#ifdef MegaVTK_USE_ITK -template< class TImage > -void QImagePageView::SetITKImage( TImage::Pointer itkImage ) -{ - if( itkImage.IsNull() ) - { - return; - } - - typedef itk::ImageToVTKImageFilter< TImage > ConverterType; - ConverterType::Pointer myConverter = ConverterType::New(); - myConverter->SetInput ( itkImage ); - myConverter->Update(); - - this->SetImage ( myConverter->GetOutput() ); - - this->ImageConverter = myConverter; -} -#endif - -void QImagePageView::SetImage( vtkImageData* input ) -{ - if( !input ) - return; - else - { - this->Image = input; - - vtkViewImage2D* View1 = vtkViewImage2D::New(); - View1->SetViewConvention( vtkViewImage2D::VIEW_CONVENTION_NEUROLOGICAL ); - vtkRenderWindow* renwin1 = this->qvtkWidget_1->GetRenderWindow( ); -// renwin1->GetRenderers()->RemoveAllItems(); - View1->SetupInteractor( this->qvtkWidget_1->GetInteractor() ); - View1->SetRenderWindow( renwin1 ); - View1->SetRenderer( renwin1->GetRenderers()->GetFirstRenderer() ); - View1->SetViewOrientation( vtkViewImage2D::VIEW_ORIENTATION_AXIAL ); - View1->SetInput( this->Image ); - - this->Pool->AddItem( View1 ); - this->View3D->Add2DPhantom( 0, View1->GetImageActor(), View1->GetSlicePlane() ); - View1->Delete(); - - vtkViewImage2D* View2 = vtkViewImage2D::New(); - View2->SetViewConvention( vtkViewImage2D::VIEW_CONVENTION_NEUROLOGICAL ); - vtkRenderWindow* renwin2 = this->qvtkWidget_2->GetRenderWindow( ); - View2->SetRenderWindow( renwin2 ); - View2->SetRenderer( renwin2->GetRenderers()->GetFirstRenderer() ); - View2->SetupInteractor( this->qvtkWidget_2->GetInteractor() ); - View2->SetViewOrientation (vtkViewImage2D::VIEW_ORIENTATION_CORONAL); - View2->SetInput( this->Image ); - - this->Pool->AddItem( View2 ); - this->View3D->Add2DPhantom( 1, View2->GetImageActor(), View2->GetSlicePlane() ); - View2->Delete(); - - vtkViewImage2D* View3 = vtkViewImage2D::New(); - View2->SetViewConvention( vtkViewImage2D::VIEW_CONVENTION_NEUROLOGICAL ); - vtkRenderWindow* renwin3 = this->qvtkWidget_3->GetRenderWindow( ); - View3->SetRenderWindow( renwin3 ); - View3->SetRenderer( renwin3->GetRenderers()->GetFirstRenderer() ); - View3->SetupInteractor( this->qvtkWidget_3->GetInteractor() ); - View3->SetViewOrientation (vtkViewImage2D::VIEW_ORIENTATION_SAGITTAL); - View3->SetInput( this->Image ); - - this->Pool->AddItem( View3 ); - this->View3D->Add2DPhantom( 2, View3->GetImageActor(), View3->GetSlicePlane() ); - View3->Delete(); - - int size[2] = {400, 400}; - this->Pool->SyncSetSize (size); - - vtkRenderWindow* renwin4 = this->qvtkWidget_4->GetRenderWindow( ); - this->View3D->SetRenderWindow( renwin4 ); - this->View3D->SetupInteractor( this->qvtkWidget_4->GetInteractor() ); - this->View3D->SetInput( this->Image ); - - this->View3D->ResetCamera(); - this->Pool->SetExtraRenderWindow( renwin4 ); - - this->Pool->Initialize(); - this->Pool->SyncSetShowAnnotations( true ); - this->Pool->SyncSetShowScalarBar( true ); - this->Pool->SyncReset(); - this->Pool->SyncRender(); - } -} - -void QImagePageView::SetShowScalarBar( const bool& state ) -{ - this->Pool->SyncSetShowScalarBar(state); -} - -void QImagePageView::SetShowAnnotations( const bool& iState ) -{ - this->Pool->SyncSetShowAnnotations( iState ); -} - -void QImagePageView::SetColorWindow( const double& iValue ) -{ - this->Pool->SyncSetColorWindow( iValue ); -} - -void QImagePageView::SetColorLevel( const double& iValue ) -{ - this->Pool->SyncSetColorLevel( iValue ); -} - -void QImagePageView::SetTag( const QString& iTag ) -{ - this->Tag = iTag; -} - -QString QImagePageView::GetTag( ) const -{ - return this->Tag; -} - -void QImagePageView::resizeEvent( QResizeEvent* event ) -{ - QWidget::resizeEvent( event ); - QSize size = event->size(); - vSplitter->resize( size ); -// gridLayoutWidget->setGeometry( -// QRect(0, 0, size.width(), size.height() ) ); -} -// diff --git a/branches/ColorViewer/ExternalCode/MegaVTK/qt/QImagePageView.h b/branches/ColorViewer/ExternalCode/MegaVTK/qt/QImagePageView.h deleted file mode 100644 index 66e3127c..00000000 --- a/branches/ColorViewer/ExternalCode/MegaVTK/qt/QImagePageView.h +++ /dev/null @@ -1,184 +0,0 @@ -/*========================================================================= - Authors: The GoFigure Dev. Team. - while at Megason Lab, Systems biology, Harvard Medical school, 2009 - - Copyright (c) 2009, President and Fellows of Harvard College. - All rights reserved. - - Redistribution and use in source and binary forms, with or without - modification, are permitted provided that the following conditions are met: - - Redistributions of source code must retain the above copyright notice, - this list of conditions and the following disclaimer. - Redistributions in binary form must reproduce the above copyright notice, - this list of conditions and the following disclaimer in the documentation - and/or other materials provided with the distribution. - Neither the name of the President and Fellows of Harvard College - nor the names of its contributors may be used to endorse or promote - products derived from this software without specific prior written - permission. - - THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS - "AS IS" AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, - THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR - PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT OWNER OR CONTRIBUTORS - BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, - OR CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT - OF SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR PROFITS; - OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, - WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE - OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF - ADVISED OF THE POSSIBILITY OF SUCH DAMAGE. - - =========================================================================*/ - -#ifndef __QImagePageView_h -#define __QImagePageView_h - -#include -#include -#include -#include -#include -#include -#include -#include -#include -#include - -#include - -#include "vtkViewImage.h" -#include "vtkViewImage2D.h" -#include "vtkViewImage3D.h" -#include "vtkViewImage2DCollection.h" - -class QImagePageView : public QWidget -{ - Q_OBJECT -public: - explicit QImagePageView( QWidget* parent = 0 ); - ~QImagePageView(); - - void SetImage( vtkImageData* input ); -#ifdef MegaVTK_USE_ITK - template< class TImage > - void SetITKImage (TImage::Pointer); -#endif - - void setupUi( QWidget *Form ); - void retranslateUi(QWidget *Form); - - int GetFullScreenView( ) const; - - QVTKWidget* GetActiveQVTKWidget( ); - vtkViewImage* GetActiveView(); - - enum SnapshotImageType - { - BMP = 0, - EPS, - JPEG, - PNG, - TIFF - }; - - void SetTag( const QString& iTag ); - QString GetTag( ) const; - -public slots: - - void SetBackgroundColor( const double& r, const double& g, const double& b ); - void SetBackgroundColor( double rgb[3] ); - void SetBackgroundColor( const QColor& iColor ); - - void SetLookupTable( vtkLookupTable* lut ); - void SetShowAnnotations( const bool& ); - void SetShowScalarBar( const bool& ); - void SetColorWindow( const double& ); - void SetColorLevel( const double& ); - - void SetFullScreenView( const int& iS ); - void FullScreenView1(); - void FullScreenView2(); - void FullScreenView3(); - void FullScreenView4(); -// void SetView4ToTriPlanarMode(); -// void SetView4ToVolumeRenderingMode(); -/* - void SnapshotView1( const SnapshotImageType& iType, - const QString& iBaseName = QString( "snapshot" ) ); - void SnapshotView2( const SnapshotImageType& iType, - const QString& iBaseName = QString( "snapshot" ) ); - void SnapshotView3( const SnapshotImageType& iType, - const QString& iBaseName = QString( "snapshot" ) ); - void SnapshotView4( const SnapshotImageType& iType, - const QString& iBaseName = QString( "snapshot" ) );*/ - -// void Render( ); - -protected: - QSplitter* vSplitter; - QSplitter* htSplitter; - QSplitter* hbSplitter; - - QWidget* LayOutWidget1; - QHBoxLayout* LayOut1; - QSlider* slider1; - QVTKWidget* qvtkWidget_1; - - QWidget* LayOutWidget2; - QHBoxLayout* LayOut2; - QSlider* slider2; - QVTKWidget* qvtkWidget_2; - - QWidget* LayOutWidget3; - QHBoxLayout* LayOut3; - QSlider* slider3; - QVTKWidget* qvtkWidget_3; - - QWidget* LayOutWidget4; - QHBoxLayout* LayOut4; - QVTKWidget* qvtkWidget_4; - QSpacerItem* Spacer; - vtkViewImage3D* View3D; - - vtkImageData* Image; - - vtkViewImage2DCollection* Pool; - - QString Tag; - -#ifdef MegaVTK_USE_ITK - /** - This pointer is used to store internally a reference to the - current ITK->VTK converter, in order to prevent the image buffer - to be deleted unexpectdely. See the SetITKImageInXXX for more - information. - */ - //BTX - itk::ProcessObject::Pointer ImageConverter; - //ETX -#endif - - void CreateAllViews( ); - - virtual void resizeEvent( QResizeEvent* event ); -// virtual void dragEnterEvent ( QDragEnterEvent * event ); - -// void SnapshotView( QVTKWidget* iWidget, -// const SnapshotImageType& iType, -// const QString& iBaseName = QString( "snapshot" ) ); -// -// bool BuildScreenshotFromImage( vtkImageData* image, -// vtkImageData* screenshot, int size = 0 ); -// bool BuildScreenshotFromRenderWindow( vtkRenderWindow *win, -// vtkImageData* screenshot, int size = 0 ); - - double BackgroundRGB[3]; - int SnapshotId; - - int IsFullScreen; -}; - -#endif diff --git a/branches/ColorViewer/ExternalCode/MegaVTK/qt/QImagePageView4DTracer.cxx b/branches/ColorViewer/ExternalCode/MegaVTK/qt/QImagePageView4DTracer.cxx deleted file mode 100644 index 611b9c9f..00000000 --- a/branches/ColorViewer/ExternalCode/MegaVTK/qt/QImagePageView4DTracer.cxx +++ /dev/null @@ -1,232 +0,0 @@ -/*========================================================================= - Authors: The GoFigure Dev. Team. - while at Megason Lab, Systems biology, Harvard Medical school, 2009 - - Copyright (c) 2009, President and Fellows of Harvard College. - All rights reserved. - - Redistribution and use in source and binary forms, with or without - modification, are permitted provided that the following conditions are met: - - Redistributions of source code must retain the above copyright notice, - this list of conditions and the following disclaimer. - Redistributions in binary form must reproduce the above copyright notice, - this list of conditions and the following disclaimer in the documentation - and/or other materials provided with the distribution. - Neither the name of the President and Fellows of Harvard College - nor the names of its contributors may be used to endorse or promote - products derived from this software without specific prior written - permission. - - THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS - "AS IS" AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, - THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR - PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT OWNER OR CONTRIBUTORS - BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, - OR CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT - OF SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR PROFITS; - OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, - WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE - OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF - ADVISED OF THE POSSIBILITY OF SUCH DAMAGE. - - =========================================================================*/ - -#include "QImagePageViewTracer.h" -#include "QimagePageView4DTracer.h" - -#include "QSplitterchild.h" -#include "vtkViewImage2DCommand.h" - -#include -#include -#include -#include -#include -#include -#include - -#include -#include -#include -#include -#include - -#include -#include -#include -#include -#include -#include - -#include - -#include -#include -#include -#include - -#include - - -QImagePageView4DTracer::QImagePageView4DTracer( QWidget* parent ) : QWidget( parent ) -{ - this->NumberOfTimePoints = 0; - this->Image = (vtkImageData*)(0); - - this->Whatever = new QImagePageViewTracer( ); - - this->slider1 = new QSlider( Qt::Horizontal ); - - this->button = new QPushButton("Run &Movie"); - - this->LayOut1 = new QVBoxLayout; - this->LayOut1->addWidget( this->Whatever ); - this->LayOut1->addWidget( this->slider1 ); - this->LayOut1->addWidget( this->button ); - - this->LayOutWidget1 = new QWidget( this ); - this->LayOutWidget1->setLayout( this->LayOut1 ); - - QObject::connect( this->slider1, SIGNAL( valueChanged( int ) ), - this, SLOT( SetView( int ) ) ); - QObject::connect( this->button, SIGNAL( clicked( ) ), - this, SLOT( RunMovie( ) ) ); - - ColorVizu = true; -} - -QImagePageView4DTracer::~QImagePageView4DTracer() -{ - delete this->Whatever; - delete this->LayOut1; - delete this->LayOutWidget1; - delete this->slider1; -} - -void -QImagePageView4DTracer::SetFileName( char* name ) -{ - this->FileName = name; - this->SetView( 0 ); -} - -void QImagePageView4DTracer::ReadLSMFile( int TimePoint ) -{ - vtkImageData* myImage_ch1 = vtkImageData::New(); - vtkLSMReader* reader=vtkLSMReader::New(); - reader->SetFileName( this->FileName ); - reader->SetUpdateTimePoint( TimePoint ); - reader->Update(); - this->slider1->setMinimum( 0 ); - this->NumberOfTimePoints = reader->GetNumberOfTimePoints(); - this->slider1->setMaximum( this->NumberOfTimePoints ); - - int NumberOfChannels = reader->GetNumberOfChannels(); - myImage_ch1->ShallowCopy( reader->GetOutput() ); - reader->Delete(); - - vtkImageData* myImage_ch2; - std::cout << ColorVizu << std::endl; - if( ( NumberOfChannels == 1 ) || ( !ColorVizu ) ) - { - if( this->Image ) this->Image->Delete(); - this->Image = myImage_ch1; - return; - } - else - { - myImage_ch2 = vtkImageData::New(); - vtkLSMReader* reader2=vtkLSMReader::New(); - reader2->SetFileName( this->FileName ); - reader2->SetUpdateTimePoint( TimePoint ); - reader2->SetUpdateChannel( 1 ); - reader2->Update(); - myImage_ch2->ShallowCopy( reader2->GetOutput() ); - reader2->Delete(); - } - - vtkImageData* myImage2 = vtkImageData::New(); - vtkImageAppendComponents* appendFilter1 = vtkImageAppendComponents::New(); - appendFilter1->AddInput( myImage_ch1 ); - appendFilter1->AddInput( myImage_ch2 ); - appendFilter1->Update(); - myImage2->ShallowCopy( appendFilter1->GetOutput() ); - appendFilter1->Delete(); - myImage_ch2->Delete(); - - vtkImageData* myImage_ch3 = vtkImageData::New(); - if( NumberOfChannels == 2 ) - { - myImage_ch3->ShallowCopy( myImage_ch1 ); - } - else - { - vtkLSMReader* reader3=vtkLSMReader::New(); - reader3->SetFileName( this->FileName ); - reader3->SetUpdateTimePoint( TimePoint ); - reader3->SetUpdateChannel( 2 ); - reader3->Update(); - myImage_ch3->ShallowCopy( reader3->GetOutput() ); - reader3->Delete(); - } - myImage_ch1->Delete(); - - vtkImageData* myImage3 = vtkImageData::New(); - vtkImageAppendComponents* appendFilter2 = vtkImageAppendComponents::New(); - appendFilter2->AddInput( myImage2 ); - appendFilter2->AddInput( myImage_ch3 ); - appendFilter2->Update(); - myImage3->ShallowCopy( appendFilter2->GetOutput() ); - appendFilter2->Delete(); - myImage2->Delete(); - myImage_ch3->Delete(); - - if( this->Image ) this->Image->Delete(); - - this->Image = myImage3; -} - -void QImagePageView4DTracer::SetView( int value ) -{ - clock_t start,finish; - double time; - - start = clock(); - this->ReadLSMFile( value ); - finish = clock(); - time = (double(finish)-double(start))/CLOCKS_PER_SEC; - std::cout << "Reading Time: " << time << "s" << std::endl; - - start = clock(); - this->LayOut1->remove( this->Whatever ); - delete this->Whatever; - this->Whatever = new QImagePageViewTracer( ); - this->LayOut1->insertWidget( 0, this->Whatever ); - finish = clock(); - time = (double(finish)-double(start))/CLOCKS_PER_SEC; - std::cout << "Replace widget: " << time << "s" << std::endl; - - start = clock(); - this->Whatever->SetImage( this->Image ); - finish = clock(); - time = (double(finish)-double(start))/CLOCKS_PER_SEC; - std::cout << "Set image in widget: " << time << "s" << std::endl; -} - -void QImagePageView4DTracer::resizeEvent( QResizeEvent* event ) -{ - QWidget::resizeEvent( event ); - this->LayOutWidget1->resize( event->size() ); -} - -void QImagePageView4DTracer::RunMovie( ) -{ - std::cout << "Enjoy movie mode." << std::endl; - - for( unsigned int i = 0; i < this->NumberOfTimePoints; i++) - { - this->slider1->setValue( i ); - } -} - diff --git a/branches/ColorViewer/ExternalCode/MegaVTK/qt/QImagePageView4DTracer.h b/branches/ColorViewer/ExternalCode/MegaVTK/qt/QImagePageView4DTracer.h deleted file mode 100644 index 53866a07..00000000 --- a/branches/ColorViewer/ExternalCode/MegaVTK/qt/QImagePageView4DTracer.h +++ /dev/null @@ -1,99 +0,0 @@ -/*========================================================================= - Authors: The GoFigure Dev. Team. - while at Megason Lab, Systems biology, Harvard Medical school, 2009 - - Copyright (c) 2009, President and Fellows of Harvard College. - All rights reserved. - - Redistribution and use in source and binary forms, with or without - modification, are permitted provided that the following conditions are met: - - Redistributions of source code must retain the above copyright notice, - this list of conditions and the following disclaimer. - Redistributions in binary form must reproduce the above copyright notice, - this list of conditions and the following disclaimer in the documentation - and/or other materials provided with the distribution. - Neither the name of the President and Fellows of Harvard College - nor the names of its contributors may be used to endorse or promote - products derived from this software without specific prior written - permission. - - THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS - "AS IS" AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, - THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR - PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT OWNER OR CONTRIBUTORS - BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, - OR CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT - OF SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR PROFITS; - OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, - WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE - OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF - ADVISED OF THE POSSIBILITY OF SUCH DAMAGE. - - =========================================================================*/ - -#ifndef __QImagePageView4DTracer_h -#define __QImagePageView4DTracer_h - -#include -#include -#include -#include -#include -#include -#include -#include -#include -#include -#include - -#include -#include - -#include "vtkViewImage3D.h" -#include "vtkViewImage2DWithContourWidgetCollection.h" -#include "QSplitterchild.h" -#include "QImagePageViewTracer.h" - -/** -\class QImagePageView4DTracer -*/ -class QImagePageView4DTracer : public QWidget -{ - Q_OBJECT -public: - explicit QImagePageView4DTracer( QWidget* parent = 0 ); - ~QImagePageView4DTracer(); - - void SetFileName( char* name ); - void SetColorVizu( int value ) - { - std::cout << "Value: " << value << std::endl; - this->ColorVizu = value; - std::cout << "ColorVizu: " << this->ColorVizu << std::endl; - }; - -public slots: - void SetView( int value ); - void RunMovie(); - -protected: - QWidget* LayOutWidget1; - QVBoxLayout* LayOut1; - QSlider* slider1; - QPushButton* button; - - QImagePageViewTracer* Whatever; - - virtual void resizeEvent( QResizeEvent* event ); - - int NumberOfTimePoints; - char* FileName; - vtkImageData* Image; - void ReadLSMFile( int TimePoint ); - void Render() { this->Whatever->Render( ); }; - - int ColorVizu; -}; - -#endif diff --git a/branches/ColorViewer/ExternalCode/MegaVTK/qt/QImagePageViewTracer.cxx b/branches/ColorViewer/ExternalCode/MegaVTK/qt/QImagePageViewTracer.cxx deleted file mode 100644 index 3d49be38..00000000 --- a/branches/ColorViewer/ExternalCode/MegaVTK/qt/QImagePageViewTracer.cxx +++ /dev/null @@ -1,963 +0,0 @@ -/*========================================================================= - Authors: The GoFigure Dev. Team. - while at Megason Lab, Systems biology, Harvard Medical school, 2009 - - Copyright (c) 2009, President and Fellows of Harvard College. - All rights reserved. - - Redistribution and use in source and binary forms, with or without - modification, are permitted provided that the following conditions are met: - - Redistributions of source code must retain the above copyright notice, - this list of conditions and the following disclaimer. - Redistributions in binary form must reproduce the above copyright notice, - this list of conditions and the following disclaimer in the documentation - and/or other materials provided with the distribution. - Neither the name of the President and Fellows of Harvard College - nor the names of its contributors may be used to endorse or promote - products derived from this software without specific prior written - permission. - - THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS - "AS IS" AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, - THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR - PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT OWNER OR CONTRIBUTORS - BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, - OR CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT - OF SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR PROFITS; - OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, - WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE - OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF - ADVISED OF THE POSSIBILITY OF SUCH DAMAGE. - - =========================================================================*/ - -#include "QImagePageViewTracer.h" -#include "QSplitterchild.h" -#include "vtkViewImage2DCommand.h" - -#include -#include -#include -#include -#include -#include - -#include -#include -#include -#include - -#include -#include -#include -#include -#include - -#include - -#include -#include -#include -#include - -QImagePageViewTracer::QImagePageViewTracer( QWidget* parent ) : QWidget( parent ) -{ - IsFullScreen = 0; - SnapshotId = 1; - - Tag = QString( "QImagePageViewTracer" ); - Image = 0; - - Pool = vtkViewImage2DWithContourWidgetCollection::New(); - View3D = vtkViewImage3D::New(); - - vtkEventQtConnector = vtkEventQtSlotConnect::New(); - - setupUi( this ); - QObject::connect( this->slider1, SIGNAL( valueChanged( int ) ), - this, SLOT( SetSlideView1( int ) ) ); - QObject::connect( this->slider2, SIGNAL( valueChanged( int ) ), - this, SLOT( SetSlideView2( int ) ) ); - QObject::connect( this->slider3, SIGNAL( valueChanged( int ) ), - this, SLOT( SetSlideView3( int ) ) ); - - QObject::connect( this->htSplitter, SIGNAL( splitterMoved( int, int ) ), - this->hbSplitter, SLOT( moveSplitter( int, int ) ) ); - QObject::connect(this->hbSplitter, SIGNAL( splitterMoved( int, int ) ), - this->htSplitter, SLOT( moveSplitter( int, int ) ) ); - -} - -QImagePageViewTracer::~QImagePageViewTracer() -{ - delete htSplitter; - delete hbSplitter; - Pool->Delete(); - View3D->Delete(); - vtkEventQtConnector->Delete(); -} - -void QImagePageViewTracer::setupUi( QWidget* parent ) -{ - if(parent->objectName().isEmpty()) - { - parent->resize(800, 800); - } - - QList< int > list_size; - list_size.push_back( 10 ); - list_size.push_back( 10 ); - - this->vSplitter = new QSplitter( Qt::Vertical, parent ); - - this->htSplitter = new QSplitterchild( this->vSplitter ); - this->hbSplitter = new QSplitterchild( this->vSplitter ); - - this->vSplitter->addWidget(this->htSplitter); - this->vSplitter->addWidget(this->hbSplitter); - this->vSplitter->setSizes( list_size ); - this->vSplitter->resize( 800, 800 ); - - this->qvtkWidget_XY = new QVTKWidget; - this->slider1 = new QSlider( Qt::Vertical ); - this->LayOut1 = new QHBoxLayout; - this->LayOut1->addWidget( this->qvtkWidget_XY ); - this->LayOut1->addWidget( this->slider1 ); - this->LayOutWidget1 = new QWidget; - this->LayOutWidget1->setLayout( this->LayOut1 ); - this->htSplitter->addWidget( this->LayOutWidget1 ); - - this->qvtkWidget_2 = new QVTKWidget; - this->slider2 = new QSlider( Qt::Vertical ); - this->LayOut2 = new QHBoxLayout; - this->LayOut2->addWidget( this->qvtkWidget_2 ); - this->LayOut2->addWidget( this->slider2 ); - this->LayOutWidget2 = new QWidget; - this->LayOutWidget2->setLayout( this->LayOut2 ); - this->hbSplitter->addWidget( this->LayOutWidget2 ); -// this->htSplitter->setSizes( list_size ); - - this->qvtkWidget_3 = new QVTKWidget; - this->slider3 = new QSlider( Qt::Vertical ); - this->LayOut3 = new QHBoxLayout; - this->LayOut3->addWidget( this->qvtkWidget_3 ); - this->LayOut3->addWidget( this->slider3 ); - this->LayOutWidget3 = new QWidget; - this->LayOutWidget3->setLayout( this->LayOut3 ); - this->htSplitter->addWidget( this->LayOutWidget3 ); - - this->qvtkWidget_XYZ = new QVTKWidget; - this->Spacer = new QSpacerItem( 27, 10, - QSizePolicy::Minimum, QSizePolicy::Minimum); - this->LayOut4 = new QHBoxLayout; - this->LayOut4->addWidget( this->qvtkWidget_XYZ ); - this->LayOut4->addItem( this->Spacer ); - this->LayOutWidget4 = new QWidget; - this->LayOutWidget4->setLayout( this->LayOut4 ); - this->hbSplitter->addWidget( this->LayOutWidget4 ); - - vtkRenderWindow* renwin4 = this->qvtkWidget_XYZ->GetRenderWindow( ); - View3D->SetRenderWindow( renwin4 ); - - retranslateUi(parent); - - QMetaObject::connectSlotsByName(parent); -} // setupUi - -void QImagePageViewTracer::retranslateUi(QWidget *parent) -{ - parent->setWindowTitle( this->Tag ); - Q_UNUSED(parent); -} - -bool QImagePageViewTracer::BuildScreenshotFromImage( vtkImageData* image, - vtkImageData* screenshot, - int size ) -{ - if (!image || !screenshot) - { - return false; - } - - // Empty image, remove thumbnail/screenshot - - int image_dims[3]; - image->GetDimensions(image_dims); - if (image_dims[0] == 0 || - image_dims[1] == 0 || - image_dims[2] == 0) - { - return false; - } - - double factor; - vtkImageData *resample_input, *resample_output; - - // First, let's make sure we are processing the image as it - // is by clipping its UpdateExtent. By doing so, we prevent our resample - // and permute filter the process the image's *whole* extent. - - vtkImageClip *clip = vtkImageClip::New(); - clip->SetInput(image); - clip->SetOutputWholeExtent(image->GetUpdateExtent()); - clip->Update(); - - // Permute, as a convenience - - int clip_dims[3]; - clip->GetOutput()->GetDimensions(clip_dims); - - vtkImagePermute *permute = NULL; - if (clip_dims[2] != 1) - { - permute = vtkImagePermute::New(); - permute->SetInput(clip->GetOutput()); - if (clip_dims[0] == 1) - { - permute->SetFilteredAxes(1, 2, 0); - } - else - { - permute->SetFilteredAxes(0, 2, 1); - } - resample_input = permute->GetOutput(); - } - else - { - resample_input = clip->GetOutput(); - } - - resample_input->Update(); - int resample_input_dims[3];//, resample_output_dims[3]; - - resample_input->GetDimensions(resample_input_dims); - double *resample_input_spacing = resample_input->GetSpacing(); - - int large_dim = 0, small_dim = 1; - if (resample_input_dims[0] < resample_input_dims[1]) - { - large_dim = 1; - small_dim = 0; - } - - if( size != 0 ) - { - vtkImageResample *resample = vtkImageResample::New(); - resample->SetInput(resample_input); - resample->SetInterpolationModeToCubic(); - resample->SetDimensionality(2); - - // Create the screenshot - - factor = static_cast< double >( size ) / - static_cast< double >( resample_input_dims[large_dim] ); - - resample->SetAxisMagnificationFactor(large_dim, factor); - resample->SetAxisMagnificationFactor( - small_dim, factor * (resample_input_spacing[small_dim] / - resample_input_spacing[large_dim])); - resample->Update(); - resample_output = resample->GetOutput(); - // resample_output->GetDimensions(resample_output_dims); - - screenshot->ShallowCopy( resample_output ); -// SetImage( -// (const unsigned char*) resample_output->GetScalarPointer(), -// resample_output_dims[0], -// resample_output_dims[1], -// 3, -// 0, -// vtkKWIcon::ImageOptionFlipVertical); - resample->Delete(); - } - else - { - screenshot->ShallowCopy( resample_input ); - } - - // Deallocate - - clip->Delete(); - - if( permute ) - { - permute->Delete(); - } - - return true; -} - -bool QImagePageViewTracer::BuildScreenshotFromRenderWindow( - vtkRenderWindow *win, - vtkImageData* screenshot, - int size ) -{ - if( win && screenshot ) - { - vtkWindowToImageFilter* filter = vtkWindowToImageFilter::New(); - filter->ShouldRerenderOff(); - filter->SetInput( win ); - filter->Update(); - bool res = this->BuildScreenshotFromImage( filter->GetOutput(), - screenshot, size ); - filter->Delete(); - return res; - } - return false; -} - -void QImagePageViewTracer::SnapshotView( QVTKWidget* iWidget, - const SnapshotImageType& iType, - const QString& iBaseName ) -{ - vtkImageData* image = vtkImageData::New(); - BuildScreenshotFromRenderWindow( iWidget->GetRenderWindow(), - image ); - QString filename = iBaseName; - filename.append( QString( "%1" ).arg( SnapshotId ) ); - - switch( iType ) - { - default: - case BMP: - { - filename.append( ".bmp" ); - vtkBMPWriter* bmp_writer = vtkBMPWriter::New(); - bmp_writer->SetInput( image ); - bmp_writer->SetFileName( filename.toAscii( ).constData( ) ); - bmp_writer->Write(); - bmp_writer->Delete(); - } - break; - case EPS: - { - filename.append( ".eps" ); - vtkPostScriptWriter* eps_writer = vtkPostScriptWriter::New(); - eps_writer->SetInput( image ); - eps_writer->SetFileName( filename.toAscii( ).constData( ) ); - eps_writer->Write(); - eps_writer->Delete(); - } - break; - case JPEG: - { - filename.append( ".jpeg" ); - vtkJPEGWriter* jpeg_writer = vtkJPEGWriter::New(); - jpeg_writer->SetInput( image ); - jpeg_writer->SetFileName( filename.toAscii( ).constData( ) ); - jpeg_writer->Write(); - jpeg_writer->Delete(); - } - break; - case PNG: - { - filename.append( ".png" ); - vtkPNGWriter* png_writer = vtkPNGWriter::New(); - png_writer->SetInput( image ); - png_writer->SetFileName( filename.toAscii( ).constData( ) ); - png_writer->Write(); - png_writer->Delete(); - } - break; - case TIFF: - { - filename.append( ".tiff" ); - vtkTIFFWriter* tiff_writer = vtkTIFFWriter::New(); - tiff_writer->SetInput( image ); - tiff_writer->SetFileName( filename.toAscii( ).constData( ) ); - tiff_writer->Write(); - tiff_writer->Delete(); - } - break; - } - SnapshotId++; - image->Delete(); -} - -void QImagePageViewTracer::SnapshotViewXY( const SnapshotImageType& iType, - const QString& iBaseName ) -{ - SnapshotView( qvtkWidget_XY, iType, iBaseName ); -} - -void QImagePageViewTracer::SnapshotView2( const SnapshotImageType& iType, - const QString& iBaseName ) -{ - SnapshotView( qvtkWidget_2, iType, iBaseName ); -} -void QImagePageViewTracer::SnapshotView3( const SnapshotImageType& iType, - const QString& iBaseName ) -{ - SnapshotView( qvtkWidget_3, iType, iBaseName ); -} -void QImagePageViewTracer::SnapshotViewXYZ( const SnapshotImageType& iType, - const QString& iBaseName ) -{ - SnapshotView( qvtkWidget_XYZ, iType, iBaseName ); -} - -void QImagePageViewTracer::SetFullScreenView( const int& iS ) -{ - if( IsFullScreen == iS ) - IsFullScreen = 0; - else - IsFullScreen = iS; - - switch( IsFullScreen ) - { - default: - case 0: - { - LayOutWidget1->show(); - LayOutWidget2->show(); - LayOutWidget3->show(); - LayOutWidget4->show(); - break; - } - case 1: - { - LayOutWidget1->show(); - LayOutWidget2->hide(); - LayOutWidget3->hide(); - LayOutWidget4->hide(); - break; - } - case 2: - { - LayOutWidget1->hide(); - LayOutWidget2->show(); - LayOutWidget3->hide(); - LayOutWidget4->hide(); - break; - } - case 3: - { - LayOutWidget1->hide(); - LayOutWidget2->hide(); - LayOutWidget3->show(); - LayOutWidget4->hide(); - break; - } - case 4: - { - LayOutWidget1->hide(); - LayOutWidget2->hide(); - LayOutWidget3->hide(); - LayOutWidget4->show(); - break; - } - } -} - -int QImagePageViewTracer::GetFullScreenView( ) const -{ - return IsFullScreen; -} - -double* QImagePageViewTracer::GetBackgroundColor() -{ - return this->Pool->GetItem( 0 )->GetBackground(); -} - -void QImagePageViewTracer::GetBackgroundColor( double& r, - double& g, double& b ) -{ - double* rgb = this->Pool->GetItem( 0 )->GetBackground(); - r = rgb[0]; - g = rgb[1]; - b = rgb[2]; -} - -void QImagePageViewTracer::SetBackgroundColor( const double& r, -const double& g, const double& b ) -{ - double textcolor[3]; - textcolor[0] = 1. - r; - textcolor[1] = 1. - g; - textcolor[2] = 1. - b; - - double rgb[3] = {r, g, b }; - - this->Pool->SyncSetBackground( rgb ); - - vtkTextProperty* property = this->Pool->GetItem( 0 )->GetTextProperty(); -// property->SetFontFamilyToArial(); -// property->SetFontSize( 14 ); - property->SetColor( textcolor ); - this->Pool->SyncSetTextProperty( property ); -} - -void QImagePageViewTracer::SetBackgroundColor( double rgb[3] ) -{ - double textcolor[3]; - textcolor[0] = 1. - rgb[0]; - textcolor[1] = 1. - rgb[1]; - textcolor[2] = 1. - rgb[2]; - - this->Pool->SyncSetBackground( rgb ); - - vtkTextProperty* property = this->Pool->GetItem( 0 )->GetTextProperty(); -// property->SetFontFamilyToArial(); -// property->SetFontSize( 14 ); - property->SetColor( textcolor ); - this->Pool->SyncSetTextProperty( property ); -} - -void QImagePageViewTracer::SetBackgroundColor( const QColor& iColor ) -{ - int r, g, b; - iColor.getRgb( &r, &g, &b ); - double rgb[3]; - rgb[0] = static_cast< double >( r ) / 255.; - rgb[1] = static_cast< double >( g ) / 255.; - rgb[2] = static_cast< double >( b ) / 255.; - - double textcolor[3]; - textcolor[0] = 1. - rgb[0]; - textcolor[1] = 1. - rgb[1]; - textcolor[2] = 1. - rgb[2]; - - this->Pool->SyncSetBackground( rgb ); - - vtkTextProperty* property = this->Pool->GetItem( 0 )->GetTextProperty(); -// property->SetFontFamilyToArial(); -// property->SetFontSize( 14 ); - property->SetColor( textcolor ); - this->Pool->SyncSetTextProperty( property ); -} - -QVTKWidget* QImagePageViewTracer::GetActiveQVTKWidget( ) -{ - - switch(this->IsFullScreen) - { - case 1 : - return qvtkWidget_XY; - case 2 : - return qvtkWidget_2; - case 3 : - return qvtkWidget_3; - default : - return qvtkWidget_XYZ; - } -} - - -vtkViewImage* QImagePageViewTracer::GetActiveView() -{ - switch(this->IsFullScreen) - { - case 1 : - return this->Pool->GetItem(0); - case 2 : - return this->Pool->GetItem(1); - case 3 : - return this->Pool->GetItem(2); - default : - return this->Pool->GetItem(3); - } -} - -void QImagePageViewTracer::SetLookupTable( vtkLookupTable* lut ) -{ - if( !lut ) - { - return; - } - else - { - this->Pool->SyncSetLookupTable( lut ); - } -} - -void QImagePageViewTracer::quadview() -{ - SetFullScreenView( 0 ); -} - -void QImagePageViewTracer::FullScreenViewXY () -{ - SetFullScreenView( 1 ); -} - - -void QImagePageViewTracer::FullScreenView2( ) -{ - SetFullScreenView( 2 ); -} - - -void QImagePageViewTracer::FullScreenView3( ) -{ - SetFullScreenView( 3 ); -} - - -void QImagePageViewTracer::FullScreenViewXYZ ( ) -{ - SetFullScreenView( 4 ); -} - -void QImagePageViewTracer::SetView3DToTriPlanarMode() -{ - View3D->SetTriPlanarRenderingOn(); - View3D->SetVolumeRenderingOff(); - View3D->Render(); -} -// -void QImagePageViewTracer::SetView3DToVolumeRenderingMode() -{ - View3D->SetTriPlanarRenderingOff(); - View3D->SetVolumeRenderingOn(); - View3D->Render(); -} - -#ifdef MegaVTK_USE_ITK -template< class TImage > -void QImagePageViewTracer::SetITKImage( TImage::Pointer itkImage ) -{ - if( itkImage.IsNull() ) - { - return; - } - - typedef itk::ImageToVTKImageFilter< TImage > ConverterType; - ConverterType::Pointer myConverter = ConverterType::New(); - myConverter->SetInput ( itkImage ); - myConverter->Update(); - - this->SetImage ( myConverter->GetOutput() ); - - this->ImageConverter = myConverter; -} -#endif - -void QImagePageViewTracer::SetImage( vtkImageData* input ) -{ - if( !input ) - return; - else - { - if( this->Image ) this->Image->Delete(); - - this->Image = input; - - vtkViewImage2DWithContourWidget* View1 = - vtkViewImage2DWithContourWidget::New(); - View1->SetInput( this->Image ); - View1->SetViewConvention( vtkViewImage2D::VIEW_CONVENTION_NEUROLOGICAL ); - vtkRenderWindow* renwin1 = this->qvtkWidget_XY->GetRenderWindow( ); - View1->SetupInteractor( this->qvtkWidget_XY->GetInteractor() ); - View1->SetRenderWindow( renwin1 ); - View1->SetRenderer( renwin1->GetRenderers()->GetFirstRenderer() ); - View1->SetViewOrientation( vtkViewImage2D::VIEW_ORIENTATION_AXIAL ); - this->Pool->AddItem( View1 ); - this->View3D->Add2DPhantom( 0, View1->GetImageActor(), View1->GetSlicePlane() ); - - int *range = View1->GetSliceRange(); - - this->slider1->setMinimum( range[0] ); - this->slider1->setMaximum( range[1] ); - - // Event connection between vtk and qt - // when SliceMoveEvent occurs in the XY View, Slider1 moves. - vtkEventQtConnector->Connect( - reinterpret_cast< vtkObject* >( View1->GetInteractorStyle() ), - vtkViewImage2DCommand::SliceMoveEvent, - this, SLOT( MoveSlider1() ) ); - - // Event connection between vtk and qt - // when RequestedPositionEvent occurs in the XY View (double-click), - // Slider2 and Slider3 move. - vtkEventQtConnector->Connect( - reinterpret_cast< vtkObject* >( View1->GetInteractorStyle() ), - vtkViewImage2DCommand::RequestedPositionEvent, - this, SLOT( MoveSlider2() ) ); - - vtkEventQtConnector->Connect( - reinterpret_cast< vtkObject* >( View1->GetInteractorStyle() ), - vtkViewImage2DCommand::RequestedPositionEvent, - this, SLOT( MoveSlider3() ) ); - - View1->Delete(); - - vtkViewImage2DWithContourWidget* View2 = - vtkViewImage2DWithContourWidget::New(); - View2->SetInput( this->Image ); - View2->SetViewConvention( vtkViewImage2D::VIEW_CONVENTION_NEUROLOGICAL ); - vtkRenderWindow* renwin2 = this->qvtkWidget_2->GetRenderWindow( ); - View2->SetRenderWindow( renwin2 ); - View2->SetRenderer( renwin2->GetRenderers()->GetFirstRenderer() ); - View2->SetupInteractor( this->qvtkWidget_2->GetInteractor() ); - View2->SetViewOrientation (vtkViewImage2D::VIEW_ORIENTATION_CORONAL); - - this->Pool->AddItem( View2 ); - this->View3D->Add2DPhantom( 1, View2->GetImageActor(), View2->GetSlicePlane() ); - - range = View2->GetSliceRange(); - this->slider2->setMinimum( range[0] ); - this->slider2->setMaximum( range[1] ); - // Event connection between vtk and qt - // when SliceMoveEvent occurs in the XY View, Slider1 moves. - vtkEventQtConnector->Connect( - reinterpret_cast< vtkObject* >( View2->GetInteractorStyle() ), - vtkViewImage2DCommand::SliceMoveEvent, - this, SLOT( MoveSlider2() ) ); - - // Event connection between vtk and qt - // when RequestedPositionEvent occurs in the XY View (double-click), - // Slider2 and Slider3 move. - vtkEventQtConnector->Connect( - reinterpret_cast< vtkObject* >( View2->GetInteractorStyle() ), - vtkViewImage2DCommand::RequestedPositionEvent, - this, SLOT( MoveSlider1() ) ); - - vtkEventQtConnector->Connect( - reinterpret_cast< vtkObject* >( View2->GetInteractorStyle() ), - vtkViewImage2DCommand::RequestedPositionEvent, - this, SLOT( MoveSlider3() ) ); - - View2->Delete(); - - vtkViewImage2DWithContourWidget* View3 = - vtkViewImage2DWithContourWidget::New(); - View3->SetInput( this->Image ); - View3->SetViewConvention( vtkViewImage2D::VIEW_CONVENTION_NEUROLOGICAL ); - vtkRenderWindow* renwin3 = this->qvtkWidget_3->GetRenderWindow( ); - View3->SetRenderWindow( renwin3 ); - View3->SetRenderer( renwin3->GetRenderers()->GetFirstRenderer() ); - View3->SetupInteractor( this->qvtkWidget_3->GetInteractor() ); - View3->SetViewOrientation (vtkViewImage2D::VIEW_ORIENTATION_SAGITTAL); - - this->Pool->AddItem( View3 ); - this->View3D->Add2DPhantom( 2, View3->GetImageActor(), View3->GetSlicePlane() ); - - range = View3->GetSliceRange(); - this->slider3->setMinimum( range[0] ); - this->slider3->setMaximum( range[1] ); - - // Event connection between vtk and qt - // when SliceMoveEvent occurs in the XY View, Slider1 moves. - vtkEventQtConnector->Connect( - reinterpret_cast< vtkObject* >( View3->GetInteractorStyle() ), - vtkViewImage2DCommand::SliceMoveEvent, - this, SLOT( MoveSlider3() ) ); - - // Event connection between vtk and qt - // when RequestedPositionEvent occurs in the XY View (double-click), - // Slider2 and Slider3 move. - vtkEventQtConnector->Connect( - reinterpret_cast< vtkObject* >( View3->GetInteractorStyle() ), - vtkViewImage2DCommand::RequestedPositionEvent, - this, SLOT( MoveSlider1() ) ); - - vtkEventQtConnector->Connect( - reinterpret_cast< vtkObject* >( View3->GetInteractorStyle() ), - vtkViewImage2DCommand::RequestedPositionEvent, - this, SLOT( MoveSlider2() ) ); - - View3->Delete(); - - int size[2] = {400, 400}; - this->Pool->SyncSetSize (size); - - vtkRenderWindow* renwin4 = this->qvtkWidget_XYZ->GetRenderWindow( ); - this->View3D->SetupInteractor( this->qvtkWidget_XYZ->GetInteractor() ); - this->View3D->SetInput( this->Image ); - this->View3D->SetVolumeRenderingOff(); - this->View3D->SetShowScalarBar( false ); - this->View3D->ResetCamera(); - this->Pool->SetExtraRenderWindow( renwin4 ); - - this->Pool->Initialize(); - this->Pool->SyncSetShowAnnotations( true ); - this->Pool->SyncSetShowScalarBar( false ); - this->Pool->SyncSetBackground( this->Pool->GetItem(0)->GetBackground() ); - this->Pool->SyncSetTextProperty( this->Pool->GetItem(0)->GetTextProperty()); - this->Pool->SyncRender(); - this->Pool->SyncReset(); - - this->slider1->setValue( (this->slider1->minimum()+this->slider1->maximum())/2 ); - this->slider2->setValue( (this->slider2->minimum()+this->slider2->maximum())/2 ); - this->slider3->setValue( (this->slider3->minimum()+this->slider3->maximum())/2 ); - } -} - -void QImagePageViewTracer::Render() -{ - this->Pool->SyncRender(); - View3D->Render(); -} - -void QImagePageViewTracer::SetShowScalarBar( const bool& state ) -{ - this->Pool->SyncSetShowScalarBar(state); - this->Pool->SyncRender(); -} - -void QImagePageViewTracer::SetShowAnnotations( const bool& iState ) -{ - this->Pool->SyncSetShowAnnotations( iState ); -} - -void QImagePageViewTracer::SetColorWindow( const double& iValue ) -{ - this->Pool->SyncSetColorWindow( iValue ); -} - -void QImagePageViewTracer::SetColorLevel( const double& iValue ) -{ - this->Pool->SyncSetColorLevel( iValue ); -} - -void QImagePageViewTracer::SetTag( const QString& iTag ) -{ - this->Tag = iTag; -} - -QString QImagePageViewTracer::GetTag( ) const -{ - return this->Tag; -} - -void QImagePageViewTracer::SetCellId( const unsigned int& iId ) -{ - this->CellId = iId; -} - -unsigned int QImagePageViewTracer::GetCellId() const -{ - return this->CellId; -} - -void QImagePageViewTracer::SetTracerON() -{ - this->Pool->GetItem( 0 )->SetContourWidgetInteractionOn(); - this->Pool->GetItem( 1 )->SetContourWidgetInteractionOn(); - this->Pool->GetItem( 2 )->SetContourWidgetInteractionOn(); -} - -void QImagePageViewTracer::SetTracerOFF() -{ - this->Pool->GetItem( 0 )->SetContourWidgetInteractionOff(); - this->Pool->GetItem( 1 )->SetContourWidgetInteractionOff(); - this->Pool->GetItem( 2 )->SetContourWidgetInteractionOff(); -} - -void QImagePageViewTracer::SetTracer( const bool& iState ) -{ - this->Pool->GetItem( 0 )->SetContourWidgetInteraction( iState ); - this->Pool->GetItem( 1 )->SetContourWidgetInteraction( iState ); - this->Pool->GetItem( 2 )->SetContourWidgetInteraction( iState ); -} - -void QImagePageViewTracer::resizeEvent( QResizeEvent* event ) -{ - QWidget::resizeEvent( event ); - vSplitter->resize( event->size() ); -} - - -// void QImagePageViewTracer::ValidateContour( const int& iId ) -void QImagePageViewTracer::ValidateContour( - const int& iId, - const QColor& iColor, - const bool& iSave ) -{ - double rgb[3]; - rgb[0] = static_cast< double >( iColor.red() ) / 255.; - rgb[1] = static_cast< double >( iColor.green() ) / 255.; - rgb[2] = static_cast< double >( iColor.blue() ) / 255.; - - vtkOrientedGlyphContourRepresentation* contour_rep; - vtkPolyData* contour; - - vtkProperty* contour_property = vtkProperty::New(); - contour_property->SetRepresentationToWireframe(); - contour_property->SetColor( rgb ); - contour_property->SetLineWidth( 3. ); - - for( int i = 0; i < 3; i++ ) - { - contour_rep = this->Pool->GetItem( i )->GetContourRepresentation(); - contour = contour_rep->GetContourRepresentationAsPolyData( ); - - if( contour ) - { - if( contour->GetNumberOfPoints() > 2 ) - { - if( iSave ) - { - QString identifier = QString( "_id%1" ).arg( iId ); - QString orientation = QString( "_dir%1" ).arg( this->Pool->GetItem(i)->GetViewOrientation() ); - QString slice = QString( "_slice%1" ).arg( this->Pool->GetItem(i)->GetSlice() ); - - QString filename = QString( "contour%1%2%3%4" ) - .arg( identifier ).arg( orientation ).arg( slice ).arg( ".vtk" ); - - vtkPolyDataWriter* writer = vtkPolyDataWriter::New(); - writer->SetInput( contour ); - writer->SetFileName( filename.toAscii().constData() ); - writer->Write(); - - writer->Delete(); - } - - vtkPolyData* contour_copy = vtkPolyData::New(); - contour_copy->ShallowCopy( contour ); - - for( int j = 0; j < 3; j++ ) - { - this->Pool->GetItem( j )->AddDataSet( contour_copy, contour_property, true ); - } - contour_copy->Delete(); - } - } - - } - contour_property->Delete(); - this->Pool->SyncRender(); -} - -void QImagePageViewTracer::ReinitializeContour( ) -{ - for( int i = 0; i < 3; i++ ) - { - this->Pool->GetItem( i )->GetContourWidget()->Initialize( 0 ); - } - this->Pool->SyncRender(); -} - -void QImagePageViewTracer::SetSlideView1( const int& iSlice ) -{ - this->Pool->GetItem( 0 )->SetSlice( iSlice ); - this->Pool->SyncRender(); -} - -void QImagePageViewTracer::SetSlideView2( const int& iSlice ) -{ - this->Pool->GetItem( 1 )->SetSlice( iSlice ); - this->Pool->SyncRender(); -} - -void QImagePageViewTracer::SetSlideView3( const int& iSlice ) -{ - this->Pool->GetItem( 2 )->SetSlice( iSlice ); - this->Pool->SyncRender(); -} - -void QImagePageViewTracer::MoveSlider1( ) -{ - this->slider1->setValue( this->Pool->GetItem( 0 )->GetSlice() ); -} - -void QImagePageViewTracer::MoveSlider2( ) -{ - this->slider2->setValue( this->Pool->GetItem( 1 )->GetSlice() ); -} - -void QImagePageViewTracer::MoveSlider3( ) -{ - this->slider3->setValue( this->Pool->GetItem( 2 )->GetSlice() ); -} diff --git a/branches/ColorViewer/ExternalCode/MegaVTK/qt/QImagePageViewTracer.h b/branches/ColorViewer/ExternalCode/MegaVTK/qt/QImagePageViewTracer.h deleted file mode 100644 index 24ca6284..00000000 --- a/branches/ColorViewer/ExternalCode/MegaVTK/qt/QImagePageViewTracer.h +++ /dev/null @@ -1,217 +0,0 @@ -/*========================================================================= - Authors: The GoFigure Dev. Team. - while at Megason Lab, Systems biology, Harvard Medical school, 2009 - - Copyright (c) 2009, President and Fellows of Harvard College. - All rights reserved. - - Redistribution and use in source and binary forms, with or without - modification, are permitted provided that the following conditions are met: - - Redistributions of source code must retain the above copyright notice, - this list of conditions and the following disclaimer. - Redistributions in binary form must reproduce the above copyright notice, - this list of conditions and the following disclaimer in the documentation - and/or other materials provided with the distribution. - Neither the name of the President and Fellows of Harvard College - nor the names of its contributors may be used to endorse or promote - products derived from this software without specific prior written - permission. - - THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS - "AS IS" AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, - THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR - PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT OWNER OR CONTRIBUTORS - BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, - OR CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT - OF SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR PROFITS; - OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, - WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE - OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF - ADVISED OF THE POSSIBILITY OF SUCH DAMAGE. - - =========================================================================*/ - -#ifndef __QImagePageViewTracer_h -#define __QImagePageViewTracer_h - -#include -#include -#include -#include -#include -#include -#include -#include -#include -#include - -#include -#include - -#include "vtkViewImage3D.h" -#include "vtkViewImage2DWithContourWidgetCollection.h" -#include "QSplitterchild.h" - -/** -\class QImagePageViewTracer -\bug vtkViewImage3D MUST be the last element inserted in Splitters (temporary solution)... -The bug is at the destruction of the QImagePageViewTracer: -the vtkViewImage3D must be destructed last. -*/ -class QImagePageViewTracer : public QWidget -{ - Q_OBJECT -public: - explicit QImagePageViewTracer( QWidget* parent = 0 ); - ~QImagePageViewTracer(); - - void SetImage( vtkImageData* input ); - -#ifdef MegaVTK_USE_ITK - template< class TImage > - void SetITKImage (TImage::Pointer); -#endif - - void setupUi( QWidget *Form ); - void retranslateUi(QWidget *Form); - - int GetFullScreenView( ) const; - - QVTKWidget* GetActiveQVTKWidget( ); - vtkViewImage* GetActiveView(); - - enum SnapshotImageType - { - BMP = 0, - EPS, - JPEG, - PNG, - TIFF - }; - - void SetTag( const QString& iTag ); - QString GetTag( ) const; - - void SetCellId( const unsigned int& iId ); - unsigned int GetCellId( ) const; - - void SetTracerON(); - void SetTracerOFF(); - void SetTracer( const bool& iState ); - - void GetBackgroundColor( double& r, double& g, double& b ); - double* GetBackgroundColor(); - -public slots: - - void SetBackgroundColor( const double& r, const double& g, const double& b ); - void SetBackgroundColor( double rgb[3] ); - void SetBackgroundColor( const QColor& iColor ); - - void SetLookupTable( vtkLookupTable* lut ); - void SetShowAnnotations( const bool& ); - void SetShowScalarBar( const bool& ); - void SetColorWindow( const double& ); - void SetColorLevel( const double& ); - - void SetFullScreenView( const int& iS ); - void quadview(); - void FullScreenViewXY(); - void FullScreenView2(); - void FullScreenView3(); - void FullScreenViewXYZ(); - void SetView3DToTriPlanarMode(); - void SetView3DToVolumeRenderingMode(); - - void SnapshotViewXY( const SnapshotImageType& iType, - const QString& iBaseName = QString( "snapshot" ) ); - void SnapshotView2( const SnapshotImageType& iType, - const QString& iBaseName = QString( "snapshot" ) ); - void SnapshotView3( const SnapshotImageType& iType, - const QString& iBaseName = QString( "snapshot" ) ); - void SnapshotViewXYZ( const SnapshotImageType& iType, - const QString& iBaseName = QString( "snapshot" ) ); - - void SetSlideView1( const int& ); - void SetSlideView2( const int& ); - void SetSlideView3( const int& ); - - void ValidateContour( - const int& iId, - const QColor& iColor, - const bool& iSave ); - void ReinitializeContour( ); - void Render( ); - -protected: - QSplitter* vSplitter; - QSplitterchild* htSplitter; - QSplitterchild* hbSplitter; - - QWidget* LayOutWidget1; - QHBoxLayout* LayOut1; - QSlider* slider1; - QVTKWidget* qvtkWidget_XY; - - QWidget* LayOutWidget2; - QHBoxLayout* LayOut2; - QSlider* slider2; - QVTKWidget* qvtkWidget_2; - - QWidget* LayOutWidget3; - QHBoxLayout* LayOut3; - QSlider* slider3; - QVTKWidget* qvtkWidget_3; - - QWidget* LayOutWidget4; - QHBoxLayout* LayOut4; - QVTKWidget* qvtkWidget_XYZ; - QSpacerItem* Spacer; - vtkViewImage3D* View3D; - - vtkImageData* Image; - vtkEventQtSlotConnect* vtkEventQtConnector; - - vtkViewImage2DWithContourWidgetCollection* Pool; - - QString Tag; - -#ifdef MegaVTK_USE_ITK - /** - This pointer is used to store internally a reference to the - current ITK->VTK converter, in order to prevent the image buffer - to be deleted unexpectdely. See the SetITKImageInXXX for more - information. - */ - //BTX - itk::ProcessObject::Pointer ImageConverter; - //ETX -#endif - - virtual void resizeEvent( QResizeEvent* event ); -// virtual void dragEnterEvent ( QDragEnterEvent * event ); - - void SnapshotView( QVTKWidget* iWidget, - const SnapshotImageType& iType, - const QString& iBaseName = QString( "snapshot" ) ); - - bool BuildScreenshotFromImage( vtkImageData* image, - vtkImageData* screenshot, int size = 0 ); - bool BuildScreenshotFromRenderWindow( vtkRenderWindow *win, - vtkImageData* screenshot, int size = 0 ); - - int SnapshotId; - - int IsFullScreen; - - unsigned int CellId; - -protected slots: - void MoveSlider1(); - void MoveSlider2(); - void MoveSlider3(); - -}; - -#endif diff --git a/branches/ColorViewer/ExternalCode/MegaVTK/qt/QSplitterchild.cxx b/branches/ColorViewer/ExternalCode/MegaVTK/qt/QSplitterchild.cxx deleted file mode 100755 index fc4c00aa..00000000 --- a/branches/ColorViewer/ExternalCode/MegaVTK/qt/QSplitterchild.cxx +++ /dev/null @@ -1,60 +0,0 @@ -/*========================================================================= - Authors: The GoFigure Dev. Team. - while at Megason Lab, Systems biology, Harvard Medical school, 2009 - - Copyright (c) 2009, President and Fellows of Harvard College. - All rights reserved. - - Redistribution and use in source and binary forms, with or without - modification, are permitted provided that the following conditions are met: - - Redistributions of source code must retain the above copyright notice, - this list of conditions and the following disclaimer. - Redistributions in binary form must reproduce the above copyright notice, - this list of conditions and the following disclaimer in the documentation - and/or other materials provided with the distribution. - Neither the name of the President and Fellows of Harvard College - nor the names of its contributors may be used to endorse or promote - products derived from this software without specific prior written - permission. - - THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS - "AS IS" AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, - THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR - PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT OWNER OR CONTRIBUTORS - BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, - OR CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT - OF SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR PROFITS; - OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, - WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE - OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF - ADVISED OF THE POSSIBILITY OF SUCH DAMAGE. - - =========================================================================*/ - -#include "QSplitterchild.h" - -QSplitterchild::QSplitterchild( QWidget* parent ): QSplitter( parent ) -{ - prevpos=0; - previndex=0; -} - -QSplitterchild::QSplitterchild( Qt::Orientation orientation, QWidget * parent):QSplitter(orientation,parent) -{} - -QSplitterchild::~QSplitterchild() -{} - - - -void QSplitterchild::moveSplitter(int pos,int index) -{ - if ((prevpos != pos) || (previndex != index)) - { - prevpos=pos; - previndex=index; - QSplitter::moveSplitter(pos, index); - - } -} diff --git a/branches/ColorViewer/ExternalCode/MegaVTK/qt/QSplitterchild.h b/branches/ColorViewer/ExternalCode/MegaVTK/qt/QSplitterchild.h deleted file mode 100755 index 759a2a7d..00000000 --- a/branches/ColorViewer/ExternalCode/MegaVTK/qt/QSplitterchild.h +++ /dev/null @@ -1,63 +0,0 @@ -/*========================================================================= - Authors: The GoFigure Dev. Team. - while at Megason Lab, Systems biology, Harvard Medical school, 2009 - - Copyright (c) 2009, President and Fellows of Harvard College. - All rights reserved. - - Redistribution and use in source and binary forms, with or without - modification, are permitted provided that the following conditions are met: - - Redistributions of source code must retain the above copyright notice, - this list of conditions and the following disclaimer. - Redistributions in binary form must reproduce the above copyright notice, - this list of conditions and the following disclaimer in the documentation - and/or other materials provided with the distribution. - Neither the name of the President and Fellows of Harvard College - nor the names of its contributors may be used to endorse or promote - products derived from this software without specific prior written - permission. - - THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS - "AS IS" AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, - THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR - PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT OWNER OR CONTRIBUTORS - BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, - OR CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT - OF SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR PROFITS; - OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, - WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE - OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF - ADVISED OF THE POSSIBILITY OF SUCH DAMAGE. - - =========================================================================*/ - -#ifndef __QSplitterchild_h -#define __QSplitterchild_h - -#include - -/** - \class QSplitterchild - \brief in the QSplitter class, the method moveSplitter is protected, so it is -not possible to use connect between the QSplitter to synchronize them. -that's the reason for the creation of QSplitterchild. -*/ -class QSplitterchild : public QSplitter -{ - Q_OBJECT - -public: - explicit QSplitterchild( QWidget* parent = 0 ); - explicit QSplitterchild ( Qt::Orientation orientation, QWidget * parent = 0 ); - virtual ~QSplitterchild(); - -public slots: - void moveSplitter(int pos,int index); - -protected: - int prevpos; - int previndex; -}; - -#endif diff --git a/branches/ColorViewer/ExternalCode/MegaVTK/vtkItk/CMakeLists.txt b/branches/ColorViewer/ExternalCode/MegaVTK/vtkItk/CMakeLists.txt deleted file mode 100644 index 524ec0d0..00000000 --- a/branches/ColorViewer/ExternalCode/MegaVTK/vtkItk/CMakeLists.txt +++ /dev/null @@ -1 +0,0 @@ -INSTALL_FILES(/include "(\\.h|\\.txx)$") diff --git a/branches/ColorViewer/ExternalCode/MegaVTK/vtkItk/itkImageToVTKImageFilter.h b/branches/ColorViewer/ExternalCode/MegaVTK/vtkItk/itkImageToVTKImageFilter.h deleted file mode 100644 index 8f35acb3..00000000 --- a/branches/ColorViewer/ExternalCode/MegaVTK/vtkItk/itkImageToVTKImageFilter.h +++ /dev/null @@ -1,104 +0,0 @@ -/*========================================================================= - - Program: Insight Segmentation & Registration Toolkit - Module: $RCSfile: itkImageToVTKImageFilter.h,v $ - Language: C++ - Date: $Date: 2007-11-20 12:46:10 -0500 (Tue, 20 Nov 2007) $ - Version: $Revision: 477 $ - - Copyright (c) 2002 Insight Consortium. All rights reserved. - See ITKCopyright.txt or http://www.itk.org/HTML/Copyright.htm for details. - - This software is distributed WITHOUT ANY WARRANTY; without even - the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR - PURPOSE. See the above copyright notices for more information. - -=========================================================================*/ - -#ifndef __itkImageToVTKImageFilter_h -#define __itkImageToVTKImageFilter_h - -#include "itkVTKImageExport.h" -#include "vtkImageImport.h" -#include "vtkImageData.h" - -namespace itk -{ - -/** \class ImageToVTKImageFilter - * \brief Converts an ITK image into a VTK image and plugs a - * itk data pipeline to a VTK datapipeline. - * - * This class puts together an itkVTKImageExporter and a vtkImageImporter. - * It takes care of the details related to the connection of ITK and VTK - * pipelines. The User will perceive this filter as an adaptor to which - * an itk::Image can be plugged as input and a vtkImage is produced as - * output. - * - * \ingroup ImageFilters - */ -template -class ITK_EXPORT ImageToVTKImageFilter : public ProcessObject -{ -public: - /** Standard class typedefs. */ - typedef ImageToVTKImageFilter Self; - typedef ProcessObject Superclass; - typedef SmartPointer Pointer; - typedef SmartPointer ConstPointer; - - /** Method for creation through the object factory. */ - itkNewMacro(Self); - - /** Run-time type information (and related methods). */ - itkTypeMacro(ImageToVTKImageFilter, ProcessObject); - - /** Some typedefs. */ - typedef TInputImage InputImageType; - typedef typename InputImageType::ConstPointer InputImagePointer; - typedef VTKImageExport< InputImageType> ExporterFilterType; - typedef typename ExporterFilterType::Pointer ExporterFilterPointer; - - /** Get the output in the form of a vtkImage. - This call is delegated to the internal vtkImageImporter filter */ - vtkImageData * GetOutput() const; - - /** Set the input in the form of an itk::Image */ - void SetInput( const InputImageType * ); - - /** Return the internal VTK image importer filter. - This is intended to facilitate users the access - to methods in the importer */ - vtkImageImport * GetImporter() const; - - /** Return the internal ITK image exporter filter. - This is intended to facilitate users the access - to methods in the exporter */ - ExporterFilterType * GetExporter() const; - - /** This call delegate the update to the importer */ - void Update(); - -protected: - ImageToVTKImageFilter(); - virtual ~ImageToVTKImageFilter(); - -private: - ImageToVTKImageFilter(const Self&); //purposely not implemented - void operator=(const Self&); //purposely not implemented - - ExporterFilterPointer m_Exporter; - vtkImageImport * m_Importer; - -}; - -} // end namespace itk - -#ifndef ITK_MANUAL_INSTANTIATION -#include "itkImageToVTKImageFilter.txx" -#endif - -#endif - - - diff --git a/branches/ColorViewer/ExternalCode/MegaVTK/vtkItk/itkImageToVTKImageFilter.txx b/branches/ColorViewer/ExternalCode/MegaVTK/vtkItk/itkImageToVTKImageFilter.txx deleted file mode 100644 index 8035f7b7..00000000 --- a/branches/ColorViewer/ExternalCode/MegaVTK/vtkItk/itkImageToVTKImageFilter.txx +++ /dev/null @@ -1,140 +0,0 @@ -/*========================================================================= - - Program: Insight Segmentation & Registration Toolkit - Module: $RCSfile: itkImageToVTKImageFilter.txx,v $ - Language: C++ - Date: $Date: 2007-11-20 12:46:10 -0500 (Tue, 20 Nov 2007) $ - Version: $Revision: 477 $ - - Copyright (c) 2002 Insight Consortium. All rights reserved. - See ITKCopyright.txt or http://www.itk.org/HTML/Copyright.htm for details. - - This software is distributed WITHOUT ANY WARRANTY; without even - the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR - PURPOSE. See the above copyright notices for more information. - -=========================================================================*/ -#ifndef _itkImageToVTKImageFilter_txx -#define _itkImageToVTKImageFilter_txx - -#include "itkImageToVTKImageFilter.h" - -namespace itk -{ - - - -/** - * Constructor - */ -template -ImageToVTKImageFilter -::ImageToVTKImageFilter() -{ - - m_Importer = vtkImageImport::New(); - - m_Exporter = ExporterFilterType::New(); - - m_Importer->SetUpdateInformationCallback(m_Exporter->GetUpdateInformationCallback()); - m_Importer->SetPipelineModifiedCallback(m_Exporter->GetPipelineModifiedCallback()); - m_Importer->SetWholeExtentCallback(m_Exporter->GetWholeExtentCallback()); - m_Importer->SetSpacingCallback(m_Exporter->GetSpacingCallback()); - m_Importer->SetOriginCallback(m_Exporter->GetOriginCallback()); - m_Importer->SetScalarTypeCallback(m_Exporter->GetScalarTypeCallback()); - m_Importer->SetNumberOfComponentsCallback(m_Exporter->GetNumberOfComponentsCallback()); - m_Importer->SetPropagateUpdateExtentCallback(m_Exporter->GetPropagateUpdateExtentCallback()); - m_Importer->SetUpdateDataCallback(m_Exporter->GetUpdateDataCallback()); - m_Importer->SetDataExtentCallback(m_Exporter->GetDataExtentCallback()); - m_Importer->SetBufferPointerCallback(m_Exporter->GetBufferPointerCallback()); - m_Importer->SetCallbackUserData(m_Exporter->GetCallbackUserData()); - -} - - - - -/** - * Destructor - */ -template -ImageToVTKImageFilter -::~ImageToVTKImageFilter() -{ - m_Importer->Delete(); -} - - - -/** - * Set an itk::Image as input - */ -template -void -ImageToVTKImageFilter -::SetInput( const InputImageType * inputImage ) -{ - m_Exporter->SetInput( inputImage ); -} - - - -/** - * Get a vtkImage as output - */ -template -vtkImageData * -ImageToVTKImageFilter -::GetOutput() const -{ - return m_Importer->GetOutput(); -} - - - - -/** - * Get the importer filter - */ -template -vtkImageImport * -ImageToVTKImageFilter -::GetImporter() const -{ - return m_Importer; -} - - - -/** - * Get the exporter filter - */ -template -typename ImageToVTKImageFilter::ExporterFilterType * -ImageToVTKImageFilter -::GetExporter() const -{ - return m_Exporter.GetPointer(); -} - - - -/** - * Delegate the Update to the importer - */ -template -void -ImageToVTKImageFilter -::Update() -{ - m_Importer->Update(); -} - - - - - -} // end namespace itk - -#endif - diff --git a/branches/ColorViewer/ExternalCode/MegaVTK/vtkItk/itkVTKImageToImageFilter.h b/branches/ColorViewer/ExternalCode/MegaVTK/vtkItk/itkVTKImageToImageFilter.h deleted file mode 100644 index d86851df..00000000 --- a/branches/ColorViewer/ExternalCode/MegaVTK/vtkItk/itkVTKImageToImageFilter.h +++ /dev/null @@ -1,107 +0,0 @@ -/*========================================================================= - - Program: Insight Segmentation & Registration Toolkit - Module: $RCSfile: itkVTKImageToImageFilter.h,v $ - Language: C++ - Date: $Date: 2007-11-20 12:46:10 -0500 (Tue, 20 Nov 2007) $ - Version: $Revision: 477 $ - - Copyright (c) 2002 Insight Consortium. All rights reserved. - See ITKCopyright.txt or http://www.itk.org/HTML/Copyright.htm for details. - - This software is distributed WITHOUT ANY WARRANTY; without even - the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR - PURPOSE. See the above copyright notices for more information. - -=========================================================================*/ -#ifndef __itkVTKImageToImageFilter_h -#define __itkVTKImageToImageFilter_h - -#include "itkVTKImageImport.h" -#include "vtkImageExport.h" -#include "vtkImageData.h" - -#ifndef vtkFloatingPointType -#define vtkFloatingPointType float -#endif - -namespace itk -{ - -/** \class VTKImageToImageFilter - * \brief Converts a VTK image into an ITK image and plugs a - * vtk data pipeline to an ITK datapipeline. - * - * This class puts together an itkVTKImageImporter and a vtkImageExporter. - * It takes care of the details related to the connection of ITK and VTK - * pipelines. The User will perceive this filter as an adaptor to which - * a vtkImage can be plugged as input and an itk::Image is produced as - * output. - * - * \ingroup ImageFilters - */ -template -class ITK_EXPORT VTKImageToImageFilter : public ProcessObject -{ -public: - /** Standard class typedefs. */ - typedef VTKImageToImageFilter Self; - typedef ProcessObject Superclass; - typedef SmartPointer Pointer; - typedef SmartPointer ConstPointer; - - /** Method for creation through the object factory. */ - itkNewMacro(Self); - - /** Run-time type information (and related methods). */ - itkTypeMacro(VTKImageToImageFilter, ProcessObject); - - /** Some typedefs. */ - typedef TOutputImage OutputImageType; - typedef typename OutputImageType::ConstPointer OutputImagePointer; - typedef VTKImageImport< OutputImageType > ImporterFilterType; - typedef typename ImporterFilterType::Pointer ImporterFilterPointer; - - /** Get the output in the form of a vtkImage. - This call is delegated to the internal vtkImageImporter filter */ - OutputImageType * GetOutput() const; - - /** Set the input in the form of a vtkImageData */ - void SetInput( vtkImageData * ); - - /** Return the internal VTK image exporter filter. - This is intended to facilitate users the access - to methods in the exporter */ - vtkImageExport * GetExporter() const; - - /** Return the internal ITK image importer filter. - This is intended to facilitate users the access - to methods in the importer */ - ImporterFilterType * GetImporter() const; - - /** This call delegate the update to the importer */ - void Update(); - -protected: - VTKImageToImageFilter(); - virtual ~VTKImageToImageFilter(); - -private: - VTKImageToImageFilter(const Self&); //purposely not implemented - void operator=(const Self&); //purposely not implemented - - ImporterFilterPointer m_Importer; - vtkImageExport * m_Exporter; - -}; - -} // end namespace itk - -#ifndef ITK_MANUAL_INSTANTIATION -#include "itkVTKImageToImageFilter.txx" -#endif - -#endif - - - diff --git a/branches/ColorViewer/ExternalCode/MegaVTK/vtkItk/itkVTKImageToImageFilter.txx b/branches/ColorViewer/ExternalCode/MegaVTK/vtkItk/itkVTKImageToImageFilter.txx deleted file mode 100644 index 77eee805..00000000 --- a/branches/ColorViewer/ExternalCode/MegaVTK/vtkItk/itkVTKImageToImageFilter.txx +++ /dev/null @@ -1,144 +0,0 @@ -/*========================================================================= - - Program: Insight Segmentation & Registration Toolkit - Module: $RCSfile: itkVTKImageToImageFilter.txx,v $ - Language: C++ - Date: $Date: 2007-11-20 12:46:10 -0500 (Tue, 20 Nov 2007) $ - Version: $Revision: 477 $ - - Copyright (c) 2002 Insight Consortium. All rights reserved. - See ITKCopyright.txt or http://www.itk.org/HTML/Copyright.htm for details. - - This software is distributed WITHOUT ANY WARRANTY; without even - the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR - PURPOSE. See the above copyright notices for more information. - -=========================================================================*/ -#ifndef _itkVTKImageToImageFilter_txx -#define _itkVTKImageToImageFilter_txx - -#include "itkVTKImageToImageFilter.h" - -namespace itk -{ - - - -/** - * Constructor - */ -template -VTKImageToImageFilter -::VTKImageToImageFilter() -{ - - m_Exporter = vtkImageExport::New(); - - m_Importer = ImporterFilterType::New(); - - m_Importer->SetUpdateInformationCallback( m_Exporter->GetUpdateInformationCallback()); - m_Importer->SetPipelineModifiedCallback( m_Exporter->GetPipelineModifiedCallback()); - m_Importer->SetWholeExtentCallback( m_Exporter->GetWholeExtentCallback()); - m_Importer->SetSpacingCallback( m_Exporter->GetSpacingCallback()); - m_Importer->SetOriginCallback( m_Exporter->GetOriginCallback()); - m_Importer->SetScalarTypeCallback( m_Exporter->GetScalarTypeCallback()); - m_Importer->SetNumberOfComponentsCallback( m_Exporter->GetNumberOfComponentsCallback()); - m_Importer->SetPropagateUpdateExtentCallback( m_Exporter->GetPropagateUpdateExtentCallback()); - m_Importer->SetUpdateDataCallback( m_Exporter->GetUpdateDataCallback()); - m_Importer->SetDataExtentCallback( m_Exporter->GetDataExtentCallback()); - m_Importer->SetBufferPointerCallback( m_Exporter->GetBufferPointerCallback()); - m_Importer->SetCallbackUserData( m_Exporter->GetCallbackUserData()); - -} - - - - -/** - * Destructor - */ -template -VTKImageToImageFilter -::~VTKImageToImageFilter() -{ - if( m_Exporter ) - { - m_Exporter->Delete(); - m_Exporter = 0; - } -} - - - -/** - * Set a vtkImageData as input - */ -template -void -VTKImageToImageFilter -::SetInput( vtkImageData * inputImage ) -{ - m_Exporter->SetInput( inputImage ); -} - - - -/** - * Get an itk::Image as output - */ -template -typename VTKImageToImageFilter::OutputImageType * -VTKImageToImageFilter -::GetOutput() const -{ - return m_Importer->GetOutput(); -} - - - - -/** - * Get the exporter filter - */ -template -vtkImageExport * -VTKImageToImageFilter -::GetExporter() const -{ - return m_Exporter; -} - - - -/** - * Get the importer filter - */ -template -typename VTKImageToImageFilter::ImporterFilterType * -VTKImageToImageFilter -::GetImporter() const -{ - return m_Importer; -} - - - - -/** - * Delegate the Update to the importer - */ -template -void -VTKImageToImageFilter -::Update() -{ - m_Importer->Update(); -} - - - - -} // end namespace itk - -#endif - diff --git a/branches/ColorViewer/ExternalCode/MegaVTK/vtkRenderingAddOn/CMakeLists.txt b/branches/ColorViewer/ExternalCode/MegaVTK/vtkRenderingAddOn/CMakeLists.txt deleted file mode 100644 index 6acb96f3..00000000 --- a/branches/ColorViewer/ExternalCode/MegaVTK/vtkRenderingAddOn/CMakeLists.txt +++ /dev/null @@ -1,23 +0,0 @@ -FILE( GLOB vtkRenderingAddOn_SRCS2 *.cxx ) - -ADD_LIBRARY( vtkRenderingAddOn2 - ${LIBS_STYLE} - ${vtkRenderingAddOn_SRCS2} - ) - -SET(vtkRenderingAddOn_LIBS2 - vtkCommon - vtkRendering - vtkWidgets - vtkVolumeRendering - vtkHybrid - vtkImaging - ) - -TARGET_LINK_LIBRARIES( vtkRenderingAddOn2 - ${vtkRenderingAddOn_LIBS2} - ) - -INSTALL_TARGETS(/lib vtkRenderingAddOn2) - -INSTALL_FILES(/include "(\\.h|\\.txx)$") diff --git a/branches/ColorViewer/ExternalCode/MegaVTK/vtkRenderingAddOn/lut/Asymmetry.h b/branches/ColorViewer/ExternalCode/MegaVTK/vtkRenderingAddOn/lut/Asymmetry.h deleted file mode 100644 index 532bea44..00000000 --- a/branches/ColorViewer/ExternalCode/MegaVTK/vtkRenderingAddOn/lut/Asymmetry.h +++ /dev/null @@ -1,316 +0,0 @@ -/*========================================================================= - -Program: vtkINRIA3D -Module: $Id: Asymmetry.h 477 2007-11-20 17:46:10Z filus $ -Language: C++ -Author: $Author: filus $ -Date: $Date: 2007-11-20 12:46:10 -0500 (Tue, 20 Nov 2007) $ -Version: $Revision: 477 $ - -Copyright (c) 2007 INRIA - Asclepios Project. All rights reserved. - -This software is distributed WITHOUT ANY WARRANTY; without even -the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR -PURPOSE. See the above copyright notices for more information. - -=========================================================================*/ - -/*======================================================================== - Copyright (c) INRIA - ASCLEPIOS Project (http://www-sop.inria.fr/asclepios). - All rights reserved. - - Redistribution and use in source and binary forms, with or without - modification, are permitted provided that the following conditions are met: - - * Redistributions of source code must retain the above copyright notice, - this list of conditions and the following disclaimer. - - * Redistributions in binary form must reproduce the above copyright notice, - this list of conditions and the following disclaimer in the documentation - and/or other materials provided with the distribution. - - * Neither the name of INRIA or ASCLEPIOS, nor the names of any contributors - may be used to endorse or promote products derived from this software - without specific prior written permission. - - * Modified source versions must be plainly marked as such, and must not be - misrepresented as being the original software. - - THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDER AND CONTRIBUTORS ``AS IS'' - AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE - IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE - ARE DISCLAIMED. IN NO EVENT SHALL THE AUTHORS OR CONTRIBUTORS BE LIABLE FOR - ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL - DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR - SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER - CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, - OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE - OF THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE. - =========================================================================*/ - - - -#ifndef _lut_asymmetry_h_ -#define _lut_asymmetry_h_ - - -static const float AsymmetryLUT[256][3] = - {{0.000000, 0.000000, 1.000000}, - {0.000000, 0.019608, 1.000000}, - {0.000000, 0.039216, 1.000000}, - {0.000000, 0.058824, 1.000000}, - {0.000000, 0.078431, 1.000000}, - {0.000000, 0.098039, 1.000000}, - {0.000000, 0.117647, 1.000000}, - {0.000000, 0.137255, 1.000000}, - {0.000000, 0.156863, 1.000000}, - {0.000000, 0.176471, 1.000000}, - {0.000000, 0.196078, 1.000000}, - {0.000000, 0.215686, 1.000000}, - {0.000000, 0.235294, 1.000000}, - {0.000000, 0.254902, 1.000000}, - {0.000000, 0.274510, 1.000000}, - {0.000000, 0.294118, 1.000000}, - {0.000000, 0.313725, 1.000000}, - {0.000000, 0.333333, 1.000000}, - {0.000000, 0.352941, 1.000000}, - {0.000000, 0.372549, 1.000000}, - {0.000000, 0.392157, 1.000000}, - {0.000000, 0.411765, 1.000000}, - {0.000000, 0.431373, 1.000000}, - {0.000000, 0.450980, 1.000000}, - {0.000000, 0.470588, 1.000000}, - {0.000000, 0.490196, 1.000000}, - {0.000000, 0.509804, 1.000000}, - {0.000000, 0.529412, 1.000000}, - {0.000000, 0.549020, 1.000000}, - {0.000000, 0.568627, 1.000000}, - {0.000000, 0.588235, 1.000000}, - {0.000000, 0.607843, 1.000000}, - {0.000000, 0.627451, 1.000000}, - {0.000000, 0.647059, 1.000000}, - {0.000000, 0.666667, 1.000000}, - {0.000000, 0.686275, 1.000000}, - {0.000000, 0.705882, 1.000000}, - {0.000000, 0.725490, 1.000000}, - {0.000000, 0.745098, 1.000000}, - {0.000000, 0.764706, 1.000000}, - {0.000000, 0.784314, 1.000000}, - {0.000000, 0.803922, 1.000000}, - {0.000000, 0.823529, 1.000000}, - {0.000000, 0.843137, 1.000000}, - {0.000000, 0.862745, 1.000000}, - {0.000000, 0.882353, 1.000000}, - {0.000000, 0.901961, 1.000000}, - {0.000000, 0.921569, 1.000000}, - {0.000000, 0.941176, 1.000000}, - {0.000000, 0.960784, 1.000000}, - {0.000000, 0.980392, 1.000000}, - {0.000000, 1.000000, 1.000000}, - {0.000000, 1.000000, 0.980392}, - {0.000000, 1.000000, 0.960784}, - {0.000000, 1.000000, 0.941176}, - {0.000000, 1.000000, 0.921569}, - {0.000000, 1.000000, 0.901961}, - {0.000000, 1.000000, 0.882353}, - {0.000000, 1.000000, 0.862745}, - {0.000000, 1.000000, 0.843137}, - {0.000000, 1.000000, 0.823529}, - {0.000000, 1.000000, 0.803922}, - {0.000000, 1.000000, 0.784314}, - {0.000000, 1.000000, 0.764706}, - {0.000000, 1.000000, 0.745098}, - {0.000000, 1.000000, 0.725490}, - {0.000000, 1.000000, 0.705882}, - {0.000000, 1.000000, 0.686275}, - {0.000000, 1.000000, 0.666667}, - {0.000000, 1.000000, 0.647059}, - {0.000000, 1.000000, 0.627451}, - {0.000000, 1.000000, 0.607843}, - {0.000000, 1.000000, 0.588235}, - {0.000000, 1.000000, 0.568627}, - {0.000000, 1.000000, 0.549020}, - {0.000000, 1.000000, 0.529412}, - {0.000000, 1.000000, 0.509804}, - {0.000000, 1.000000, 0.490196}, - {0.000000, 1.000000, 0.470588}, - {0.000000, 1.000000, 0.450980}, - {0.000000, 1.000000, 0.431373}, - {0.000000, 1.000000, 0.411765}, - {0.000000, 1.000000, 0.392157}, - {0.000000, 1.000000, 0.372549}, - {0.000000, 1.000000, 0.352941}, - {0.000000, 1.000000, 0.333333}, - {0.000000, 1.000000, 0.313725}, - {0.000000, 1.000000, 0.294118}, - {0.000000, 1.000000, 0.274510}, - {0.000000, 1.000000, 0.254902}, - {0.000000, 1.000000, 0.235294}, - {0.000000, 1.000000, 0.215686}, - {0.000000, 1.000000, 0.196078}, - {0.000000, 1.000000, 0.176471}, - {0.000000, 1.000000, 0.156863}, - {0.000000, 1.000000, 0.137255}, - {0.000000, 1.000000, 0.117647}, - {0.000000, 1.000000, 0.098039}, - {0.000000, 1.000000, 0.078431}, - {0.000000, 1.000000, 0.058824}, - {0.000000, 1.000000, 0.039216}, - {0.000000, 1.000000, 0.019608}, - {0.000000, 1.000000, 0.000000}, - {0.019608, 1.000000, 0.000000}, - {0.039216, 1.000000, 0.000000}, - {0.058824, 1.000000, 0.000000}, - {0.078431, 1.000000, 0.000000}, - {0.098039, 1.000000, 0.000000}, - {0.117647, 1.000000, 0.000000}, - {0.137255, 1.000000, 0.000000}, - {0.156863, 1.000000, 0.000000}, - {0.176471, 1.000000, 0.000000}, - {0.196078, 1.000000, 0.000000}, - {0.215686, 1.000000, 0.000000}, - {0.235294, 1.000000, 0.000000}, - {0.254902, 1.000000, 0.000000}, - {0.274510, 1.000000, 0.000000}, - {0.294118, 1.000000, 0.000000}, - {0.313725, 1.000000, 0.000000}, - {0.333333, 1.000000, 0.000000}, - {0.352941, 1.000000, 0.000000}, - {0.372549, 1.000000, 0.000000}, - {0.392157, 1.000000, 0.000000}, - {0.411765, 1.000000, 0.000000}, - {0.431373, 1.000000, 0.000000}, - {0.450980, 1.000000, 0.000000}, - {0.470588, 1.000000, 0.000000}, - {0.490196, 1.000000, 0.000000}, - {0.509804, 1.000000, 0.000000}, - {0.529412, 1.000000, 0.000000}, - {0.549020, 1.000000, 0.000000}, - {0.568627, 1.000000, 0.000000}, - {0.588235, 1.000000, 0.000000}, - {0.607843, 1.000000, 0.000000}, - {0.627451, 1.000000, 0.000000}, - {0.647059, 1.000000, 0.000000}, - {0.666667, 1.000000, 0.000000}, - {0.686275, 1.000000, 0.000000}, - {0.705882, 1.000000, 0.000000}, - {0.725490, 1.000000, 0.000000}, - {0.745098, 1.000000, 0.000000}, - {0.764706, 1.000000, 0.000000}, - {0.784314, 1.000000, 0.000000}, - {0.803922, 1.000000, 0.000000}, - {0.823529, 1.000000, 0.000000}, - {0.843137, 1.000000, 0.000000}, - {0.862745, 1.000000, 0.000000}, - {0.882353, 1.000000, 0.000000}, - {0.901961, 1.000000, 0.000000}, - {0.921569, 1.000000, 0.000000}, - {0.941176, 1.000000, 0.000000}, - {0.960784, 1.000000, 0.000000}, - {0.980392, 1.000000, 0.000000}, - {1.000000, 1.000000, 0.000000}, - {1.000000, 0.980392, 0.000000}, - {1.000000, 0.960784, 0.000000}, - {1.000000, 0.941176, 0.000000}, - {1.000000, 0.921569, 0.000000}, - {1.000000, 0.901961, 0.000000}, - {1.000000, 0.882353, 0.000000}, - {1.000000, 0.862745, 0.000000}, - {1.000000, 0.843137, 0.000000}, - {1.000000, 0.823529, 0.000000}, - {1.000000, 0.803922, 0.000000}, - {1.000000, 0.784314, 0.000000}, - {1.000000, 0.764706, 0.000000}, - {1.000000, 0.745098, 0.000000}, - {1.000000, 0.725490, 0.000000}, - {1.000000, 0.705882, 0.000000}, - {1.000000, 0.686275, 0.000000}, - {1.000000, 0.666667, 0.000000}, - {1.000000, 0.647059, 0.000000}, - {1.000000, 0.627451, 0.000000}, - {1.000000, 0.607843, 0.000000}, - {1.000000, 0.588235, 0.000000}, - {1.000000, 0.568627, 0.000000}, - {1.000000, 0.549020, 0.000000}, - {1.000000, 0.529412, 0.000000}, - {1.000000, 0.509804, 0.000000}, - {1.000000, 0.490196, 0.000000}, - {1.000000, 0.470588, 0.000000}, - {1.000000, 0.450980, 0.000000}, - {1.000000, 0.431373, 0.000000}, - {1.000000, 0.411765, 0.000000}, - {1.000000, 0.392157, 0.000000}, - {1.000000, 0.372549, 0.000000}, - {1.000000, 0.352941, 0.000000}, - {1.000000, 0.333333, 0.000000}, - {1.000000, 0.313725, 0.000000}, - {1.000000, 0.294118, 0.000000}, - {1.000000, 0.274510, 0.000000}, - {1.000000, 0.254902, 0.000000}, - {1.000000, 0.235294, 0.000000}, - {1.000000, 0.215686, 0.000000}, - {1.000000, 0.196078, 0.000000}, - {1.000000, 0.176471, 0.000000}, - {1.000000, 0.156863, 0.000000}, - {1.000000, 0.137255, 0.000000}, - {1.000000, 0.117647, 0.000000}, - {1.000000, 0.098039, 0.000000}, - {1.000000, 0.078431, 0.000000}, - {1.000000, 0.058824, 0.000000}, - {1.000000, 0.039216, 0.000000}, - {1.000000, 0.019608, 0.000000}, - {1.000000, 0.000000, 0.000000}, - {1.000000, 0.000000, 0.019608}, - {1.000000, 0.000000, 0.039216}, - {1.000000, 0.000000, 0.058824}, - {1.000000, 0.000000, 0.078431}, - {1.000000, 0.000000, 0.098039}, - {1.000000, 0.000000, 0.117647}, - {1.000000, 0.000000, 0.137255}, - {1.000000, 0.000000, 0.156863}, - {1.000000, 0.000000, 0.176471}, - {1.000000, 0.000000, 0.196078}, - {1.000000, 0.000000, 0.215686}, - {1.000000, 0.000000, 0.235294}, - {1.000000, 0.000000, 0.254902}, - {1.000000, 0.000000, 0.274510}, - {1.000000, 0.000000, 0.294118}, - {1.000000, 0.000000, 0.313725}, - {1.000000, 0.000000, 0.333333}, - {1.000000, 0.000000, 0.352941}, - {1.000000, 0.000000, 0.372549}, - {1.000000, 0.000000, 0.392157}, - {1.000000, 0.000000, 0.411765}, - {1.000000, 0.000000, 0.431373}, - {1.000000, 0.000000, 0.450980}, - {1.000000, 0.000000, 0.470588}, - {1.000000, 0.000000, 0.490196}, - {1.000000, 0.000000, 0.509804}, - {1.000000, 0.000000, 0.529412}, - {1.000000, 0.000000, 0.549020}, - {1.000000, 0.000000, 0.568627}, - {1.000000, 0.000000, 0.588235}, - {1.000000, 0.000000, 0.607843}, - {1.000000, 0.000000, 0.627451}, - {1.000000, 0.000000, 0.647059}, - {1.000000, 0.000000, 0.666667}, - {1.000000, 0.000000, 0.686275}, - {1.000000, 0.000000, 0.705882}, - {1.000000, 0.000000, 0.725490}, - {1.000000, 0.000000, 0.745098}, - {1.000000, 0.000000, 0.764706}, - {1.000000, 0.000000, 0.784314}, - {1.000000, 0.000000, 0.803922}, - {1.000000, 0.000000, 0.823529}, - {1.000000, 0.000000, 0.843137}, - {1.000000, 0.000000, 0.862745}, - {1.000000, 0.000000, 0.882353}, - {1.000000, 0.000000, 0.901961}, - {1.000000, 0.000000, 0.921569}, - {1.000000, 0.000000, 0.941176}, - {1.000000, 0.000000, 0.960784}, - {1.000000, 0.000000, 0.980392}, - {1.000000, 0.000000, 1.000000}}; - - -#endif diff --git a/branches/ColorViewer/ExternalCode/MegaVTK/vtkRenderingAddOn/lut/Flow.h b/branches/ColorViewer/ExternalCode/MegaVTK/vtkRenderingAddOn/lut/Flow.h deleted file mode 100644 index 8d9fc5ef..00000000 --- a/branches/ColorViewer/ExternalCode/MegaVTK/vtkRenderingAddOn/lut/Flow.h +++ /dev/null @@ -1,825 +0,0 @@ -/*========================================================================= - -Program: vtkINRIA3D -Module: $Id: Flow.h 477 2007-11-20 17:46:10Z filus $ -Language: C++ -Author: $Author: filus $ -Date: $Date: 2007-11-20 12:46:10 -0500 (Tue, 20 Nov 2007) $ -Version: $Revision: 477 $ - -Copyright (c) 2007 INRIA - Asclepios Project. All rights reserved. - -This software is distributed WITHOUT ANY WARRANTY; without even -the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR -PURPOSE. See the above copyright notices for more information. - -=========================================================================*/ - -/*======================================================================== - Copyright (c) INRIA - ASCLEPIOS Project (http://www-sop.inria.fr/asclepios). - All rights reserved. - - Redistribution and use in source and binary forms, with or without - modification, are permitted provided that the following conditions are met: - - * Redistributions of source code must retain the above copyright notice, - this list of conditions and the following disclaimer. - - * Redistributions in binary form must reproduce the above copyright notice, - this list of conditions and the following disclaimer in the documentation - and/or other materials provided with the distribution. - - * Neither the name of INRIA or ASCLEPIOS, nor the names of any contributors - may be used to endorse or promote products derived from this software - without specific prior written permission. - - * Modified source versions must be plainly marked as such, and must not be - misrepresented as being the original software. - - THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDER AND CONTRIBUTORS ``AS IS'' - AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE - IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE - ARE DISCLAIMED. IN NO EVENT SHALL THE AUTHORS OR CONTRIBUTORS BE LIABLE FOR - ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL - DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR - SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER - CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, - OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE - OF THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE. - =========================================================================*/ - -#ifndef _lut_Flow_h_ -#define _lut_Flow_h_ - -static const int Flow[3*256]={ -32, - 32, - 32, - 32, - 31, - 31, - 31, - 31, - 31, - 30, - 30, - 30, - 30, - 30, - 29, - 29, - 29, - 29, - 29, - 28, - 28, - 28, - 28, - 28, - 27, - 27, - 27, - 27, - 27, - 26, - 26, - 26, - 26, - 26, - 25, - 25, - 25, - 25, - 25, - 24, - 24, - 24, - 24, - 24, - 23, - 23, - 23, - 23, - 23, - 22, - 22, - 22, - 22, - 22, - 21, - 21, - 21, - 21, - 21, - 20, - 20, - 20, - 20, - 19, - 19, - 19, - 19, - 18, - 18, - 18, - 17, - 17, - 17, - 16, - 16, - 16, - 16, - 15, - 15, - 15, - 14, - 14, - 14, - 13, - 13, - 13, - 13, - 12, - 12, - 12, - 11, - 11, - 11, - 10, - 10, - 10, - 10, - 9, - 9, - 9, - 8, - 8, - 8, - 7, - 7, - 7, - 7, - 6, - 6, - 6, - 5, - 5, - 5, - 4, - 4, - 4, - 4, - 3, - 3, - 3, - 2, - 2, - 2, - 1, - 1, - 1, - 1, - 0, - 0, - 0, - 4, - 8, - 12, - 16, - 20, - 24, - 28, - 32, - 36, - 40, - 45, - 49, - 53, - 57, - 61, - 65, - 69, - 73, - 77, - 81, - 85, - 89, - 93, - 97, - 101, - 105, - 109, - 113, - 117, - 121, - 125, - 130, - 134, - 138, - 142, - 146, - 150, - 154, - 158, - 162, - 166, - 170, - 174, - 178, - 182, - 186, - 190, - 194, - 198, - 202, - 206, - 210, - 215, - 219, - 223, - 227, - 231, - 235, - 239, - 243, - 247, - 251, - 255, - 255, - 255, - 255, - 255, - 255, - 255, - 255, - 255, - 255, - 255, - 255, - 255, - 255, - 255, - 255, - 255, - 255, - 255, - 255, - 255, - 255, - 255, - 255, - 255, - 255, - 255, - 255, - 255, - 255, - 255, - 255, - 255, - 255, - 255, - 255, - 255, - 255, - 255, - 255, - 255, - 255, - 255, - 255, - 255, - 255, - 255, - 255, - 255, - 255, - 255, - 255, - 255, - 255, - 255, - 255, - 255, - 255, - 255, - 255, - 255, - 255, - 255, - 255, - 200, - 197, - 194, - 191, - 188, - 185, - 182, - 179, - 176, - 173, - 170, - 167, - 164, - 161, - 158, - 155, - 152, - 149, - 146, - 143, - 140, - 137, - 134, - 131, - 128, - 125, - 122, - 119, - 116, - 113, - 110, - 107, - 104, - 101, - 98, - 95, - 92, - 89, - 86, - 83, - 80, - 77, - 74, - 71, - 68, - 65, - 62, - 59, - 56, - 53, - 50, - 47, - 44, - 41, - 38, - 35, - 32, - 29, - 26, - 23, - 20, - 20, - 20, - 19, - 19, - 19, - 19, - 18, - 18, - 18, - 17, - 17, - 17, - 16, - 16, - 16, - 16, - 15, - 15, - 15, - 14, - 14, - 14, - 13, - 13, - 13, - 13, - 12, - 12, - 12, - 11, - 11, - 11, - 10, - 10, - 10, - 10, - 9, - 9, - 9, - 8, - 8, - 8, - 7, - 7, - 7, - 7, - 6, - 6, - 6, - 5, - 5, - 5, - 4, - 4, - 4, - 4, - 3, - 3, - 3, - 2, - 2, - 2, - 1, - 1, - 1, - 1, - 0, - 0, - 0, - 0, - 0, - 0, - 0, - 0, - 0, - 0, - 0, - 0, - 0, - 0, - 0, - 0, - 0, - 0, - 1, - 1, - 1, - 1, - 1, - 1, - 1, - 1, - 1, - 1, - 1, - 1, - 1, - 1, - 1, - 1, - 1, - 1, - 1, - 1, - 1, - 1, - 1, - 1, - 1, - 1, - 1, - 1, - 1, - 1, - 1, - 1, - 2, - 2, - 2, - 2, - 2, - 2, - 2, - 2, - 2, - 2, - 2, - 2, - 2, - 2, - 2, - 2, - 6, - 10, - 14, - 18, - 22, - 26, - 30, - 34, - 38, - 42, - 46, - 50, - 54, - 58, - 62, - 66, - 70, - 74, - 78, - 82, - 86, - 90, - 94, - 98, - 102, - 106, - 110, - 114, - 118, - 122, - 126, - 130, - 134, - 138, - 142, - 146, - 150, - 154, - 158, - 162, - 166, - 170, - 174, - 178, - 182, - 186, - 190, - 194, - 198, - 202, - 206, - 210, - 214, - 218, - 222, - 226, - 230, - 234, - 238, - 242, - 246, - 250, - 255, - 255, - 255, - 255, - 255, - 255, - 255, - 255, - 255, - 255, - 255, - 255, - 255, - 255, - 255, - 255, - 255, - 255, - 255, - 255, - 255, - 255, - 255, - 255, - 255, - 255, - 255, - 255, - 255, - 255, - 255, - 255, - 255, - 255, - 255, - 255, - 255, - 255, - 255, - 255, - 255, - 255, - 255, - 255, - 255, - 255, - 255, - 255, - 255, - 255, - 255, - 255, - 255, - 255, - 255, - 255, - 255, - 255, - 255, - 255, - 255, - 255, - 255, - 251, - 247, - 244, - 240, - 236, - 232, - 228, - 225, - 221, - 217, - 213, - 209, - 206, - 202, - 198, - 194, - 190, - 186, - 183, - 179, - 175, - 171, - 167, - 164, - 160, - 156, - 152, - 148, - 145, - 141, - 137, - 133, - 129, - 126, - 122, - 118, - 114, - 110, - 107, - 103, - 99, - 95, - 91, - 88, - 84, - 80, - 76, - 72, - 69, - 65, - 61, - 57, - 53, - 49, - 46, - 42, - 38, - 34, - 30, - 27, - 23, - 19, - 15, - 11, - 8, - 4, - 0, - 0, - 0, - 0, - 0, - 0, - 0, - 0, - 0, - 0, - 0, - 0, - 0, - 0, - 0, - 0, - 0, - 0, - 0, - 0, - 0, - 0, - 0, - 0, - 0, - 0, - 0, - 0, - 0, - 0, - 0, - 0, - 0, - 0, - 0, - 0, - 0, - 0, - 0, - 0, - 0, - 0, - 0, - 0, - 0, - 0, - 0, - 0, - 0, - 0, - 0, - 0, - 0, - 0, - 0, - 0, - 0, - 0, - 0, - 0, - 0, - 0, - 0, - 0, - 0, - 0, - 0, - 0, - 0, - 0, - 0, - 0, - 0, - 0, - 0, - 0, - 0, - 0, - 0, - 0, - 0, - 0, - 0, - 0, - 0, - 0, - 0, - 0, - 0, - 0, - 0, - 0, - 0, - 0, - 0, - 0, - 8, - 16, - 24, - 32, - 40, - 48, - 56, - 64, - 72, - 80, - 88, - 96, - 104, - 112, - 120, - 128, - 136, - 144, - 152, - 160, - 168, - 176, - 184, - 192, - 200, - 208, - 216, - 224, - 232, - 240, - 248, - 255 -}; - -#endif diff --git a/branches/ColorViewer/ExternalCode/MegaVTK/vtkRenderingAddOn/lut/GEColor.h b/branches/ColorViewer/ExternalCode/MegaVTK/vtkRenderingAddOn/lut/GEColor.h deleted file mode 100644 index bf05c6b3..00000000 --- a/branches/ColorViewer/ExternalCode/MegaVTK/vtkRenderingAddOn/lut/GEColor.h +++ /dev/null @@ -1,825 +0,0 @@ -/*========================================================================= - -Program: vtkINRIA3D -Module: $Id: GEColor.h 477 2007-11-20 17:46:10Z filus $ -Language: C++ -Author: $Author: filus $ -Date: $Date: 2007-11-20 12:46:10 -0500 (Tue, 20 Nov 2007) $ -Version: $Revision: 477 $ - -Copyright (c) 2007 INRIA - Asclepios Project. All rights reserved. - -This software is distributed WITHOUT ANY WARRANTY; without even -the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR -PURPOSE. See the above copyright notices for more information. - -=========================================================================*/ - -/*======================================================================== - Copyright (c) INRIA - ASCLEPIOS Project (http://www-sop.inria.fr/asclepios). - All rights reserved. - - Redistribution and use in source and binary forms, with or without - modification, are permitted provided that the following conditions are met: - - * Redistributions of source code must retain the above copyright notice, - this list of conditions and the following disclaimer. - - * Redistributions in binary form must reproduce the above copyright notice, - this list of conditions and the following disclaimer in the documentation - and/or other materials provided with the distribution. - - * Neither the name of INRIA or ASCLEPIOS, nor the names of any contributors - may be used to endorse or promote products derived from this software - without specific prior written permission. - - * Modified source versions must be plainly marked as such, and must not be - misrepresented as being the original software. - - THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDER AND CONTRIBUTORS ``AS IS'' - AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE - IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE - ARE DISCLAIMED. IN NO EVENT SHALL THE AUTHORS OR CONTRIBUTORS BE LIABLE FOR - ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL - DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR - SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER - CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, - OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE - OF THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE. - =========================================================================*/ - -#ifndef _lut_GEColor_h_ -#define _lut_GEColor_h_ - -static const int GEColor[3*256]={ -0, - 0, - 0, - 0, - 0, - 0, - 0, - 0, - 0, - 0, - 0, - 0, - 0, - 0, - 0, - 0, - 0, - 0, - 0, - 0, - 0, - 0, - 0, - 0, - 0, - 0, - 0, - 0, - 0, - 0, - 0, - 0, - 0, - 0, - 0, - 0, - 0, - 0, - 0, - 0, - 0, - 0, - 0, - 0, - 0, - 0, - 0, - 0, - 0, - 0, - 0, - 0, - 0, - 0, - 0, - 0, - 0, - 0, - 0, - 0, - 0, - 0, - 0, - 0, - 1, - 3, - 5, - 7, - 9, - 11, - 13, - 15, - 17, - 19, - 21, - 23, - 25, - 27, - 29, - 31, - 33, - 35, - 37, - 39, - 41, - 43, - 45, - 47, - 49, - 51, - 53, - 55, - 57, - 59, - 61, - 63, - 65, - 67, - 69, - 71, - 73, - 75, - 77, - 79, - 81, - 83, - 85, - 86, - 88, - 90, - 92, - 94, - 96, - 98, - 100, - 102, - 104, - 106, - 108, - 110, - 112, - 114, - 116, - 118, - 120, - 122, - 124, - 126, - 128, - 130, - 132, - 134, - 136, - 138, - 140, - 142, - 144, - 146, - 148, - 150, - 152, - 154, - 156, - 158, - 160, - 162, - 164, - 166, - 168, - 170, - 171, - 173, - 175, - 177, - 179, - 181, - 183, - 185, - 187, - 189, - 191, - 193, - 195, - 197, - 199, - 201, - 203, - 205, - 207, - 209, - 211, - 213, - 215, - 217, - 219, - 221, - 223, - 225, - 227, - 229, - 231, - 233, - 235, - 237, - 239, - 241, - 243, - 245, - 247, - 249, - 251, - 253, - 255, - 255, - 255, - 255, - 255, - 255, - 255, - 255, - 255, - 255, - 255, - 255, - 255, - 255, - 255, - 255, - 255, - 255, - 255, - 255, - 255, - 255, - 255, - 255, - 255, - 255, - 255, - 255, - 255, - 255, - 255, - 255, - 255, - 255, - 255, - 255, - 255, - 255, - 255, - 255, - 255, - 255, - 255, - 255, - 255, - 255, - 255, - 255, - 255, - 255, - 255, - 255, - 255, - 255, - 255, - 255, - 255, - 255, - 255, - 255, - 255, - 255, - 255, - 255, -0, - 2, - 4, - 6, - 8, - 10, - 12, - 14, - 16, - 18, - 20, - 22, - 24, - 26, - 28, - 30, - 32, - 34, - 36, - 38, - 40, - 42, - 44, - 46, - 48, - 50, - 52, - 54, - 56, - 58, - 60, - 62, - 65, - 67, - 69, - 71, - 73, - 75, - 77, - 79, - 81, - 83, - 85, - 87, - 89, - 91, - 93, - 95, - 97, - 99, - 101, - 103, - 105, - 107, - 109, - 111, - 113, - 115, - 117, - 119, - 121, - 123, - 125, - 128, - 126, - 124, - 122, - 120, - 118, - 116, - 114, - 112, - 110, - 108, - 106, - 104, - 102, - 100, - 98, - 96, - 94, - 92, - 90, - 88, - 86, - 84, - 82, - 80, - 78, - 76, - 74, - 72, - 70, - 68, - 66, - 64, - 63, - 61, - 59, - 57, - 55, - 53, - 51, - 49, - 47, - 45, - 43, - 41, - 39, - 37, - 35, - 33, - 31, - 29, - 27, - 25, - 23, - 21, - 19, - 17, - 15, - 13, - 11, - 9, - 7, - 5, - 3, - 1, - 0, - 2, - 4, - 6, - 8, - 10, - 12, - 14, - 16, - 18, - 20, - 22, - 24, - 26, - 28, - 30, - 32, - 34, - 36, - 38, - 40, - 42, - 44, - 46, - 48, - 50, - 52, - 54, - 56, - 58, - 60, - 62, - 64, - 66, - 68, - 70, - 72, - 74, - 76, - 78, - 80, - 82, - 84, - 86, - 88, - 90, - 92, - 94, - 96, - 98, - 100, - 102, - 104, - 106, - 108, - 110, - 112, - 114, - 116, - 118, - 120, - 122, - 124, - 126, - 128, - 130, - 132, - 134, - 136, - 138, - 140, - 142, - 144, - 146, - 148, - 150, - 152, - 154, - 156, - 158, - 160, - 162, - 164, - 166, - 168, - 170, - 172, - 174, - 176, - 178, - 180, - 182, - 184, - 186, - 188, - 190, - 192, - 194, - 196, - 198, - 200, - 202, - 204, - 206, - 208, - 210, - 212, - 214, - 216, - 218, - 220, - 222, - 224, - 226, - 228, - 230, - 232, - 234, - 236, - 238, - 240, - 242, - 244, - 246, - 248, - 250, - 252, - 255, - 0, - 1, - 3, - 5, - 7, - 9, - 11, - 13, - 15, - 17, - 19, - 21, - 23, - 25, - 27, - 29, - 31, - 33, - 35, - 37, - 39, - 41, - 43, - 45, - 47, - 49, - 51, - 53, - 55, - 57, - 59, - 61, - 63, - 65, - 67, - 69, - 71, - 73, - 75, - 77, - 79, - 81, - 83, - 85, - 87, - 89, - 91, - 93, - 95, - 97, - 99, - 101, - 103, - 105, - 107, - 109, - 111, - 113, - 115, - 117, - 119, - 121, - 123, - 125, - 127, - 129, - 131, - 133, - 135, - 137, - 139, - 141, - 143, - 145, - 147, - 149, - 151, - 153, - 155, - 157, - 159, - 161, - 163, - 165, - 167, - 169, - 171, - 173, - 175, - 177, - 179, - 181, - 183, - 185, - 187, - 189, - 191, - 193, - 195, - 197, - 199, - 201, - 203, - 205, - 207, - 209, - 211, - 213, - 215, - 217, - 219, - 221, - 223, - 225, - 227, - 229, - 231, - 233, - 235, - 237, - 239, - 241, - 243, - 245, - 247, - 249, - 251, - 253, - 255, - 252, - 248, - 244, - 240, - 236, - 232, - 228, - 224, - 220, - 216, - 212, - 208, - 204, - 200, - 196, - 192, - 188, - 184, - 180, - 176, - 172, - 168, - 164, - 160, - 156, - 152, - 148, - 144, - 140, - 136, - 132, - 128, - 124, - 120, - 116, - 112, - 108, - 104, - 100, - 96, - 92, - 88, - 84, - 80, - 76, - 72, - 68, - 64, - 60, - 56, - 52, - 48, - 44, - 40, - 36, - 32, - 28, - 24, - 20, - 16, - 12, - 8, - 4, - 0, - 4, - 8, - 12, - 16, - 20, - 24, - 28, - 32, - 36, - 40, - 44, - 48, - 52, - 56, - 60, - 64, - 68, - 72, - 76, - 80, - 85, - 89, - 93, - 97, - 101, - 105, - 109, - 113, - 117, - 121, - 125, - 129, - 133, - 137, - 141, - 145, - 149, - 153, - 157, - 161, - 165, - 170, - 174, - 178, - 182, - 186, - 190, - 194, - 198, - 202, - 206, - 210, - 214, - 218, - 222, - 226, - 230, - 234, - 238, - 242, - 246, - 250, - 255 -}; - -#endif diff --git a/branches/ColorViewer/ExternalCode/MegaVTK/vtkRenderingAddOn/lut/HotMetal.h b/branches/ColorViewer/ExternalCode/MegaVTK/vtkRenderingAddOn/lut/HotMetal.h deleted file mode 100644 index fe707d30..00000000 --- a/branches/ColorViewer/ExternalCode/MegaVTK/vtkRenderingAddOn/lut/HotMetal.h +++ /dev/null @@ -1,825 +0,0 @@ -/*========================================================================= - -Program: vtkINRIA3D -Module: $Id: HotMetal.h 477 2007-11-20 17:46:10Z filus $ -Language: C++ -Author: $Author: filus $ -Date: $Date: 2007-11-20 12:46:10 -0500 (Tue, 20 Nov 2007) $ -Version: $Revision: 477 $ - -Copyright (c) 2007 INRIA - Asclepios Project. All rights reserved. - -This software is distributed WITHOUT ANY WARRANTY; without even -the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR -PURPOSE. See the above copyright notices for more information. - -=========================================================================*/ - -/*======================================================================== - Copyright (c) INRIA - ASCLEPIOS Project (http://www-sop.inria.fr/asclepios). - All rights reserved. - - Redistribution and use in source and binary forms, with or without - modification, are permitted provided that the following conditions are met: - - * Redistributions of source code must retain the above copyright notice, - this list of conditions and the following disclaimer. - - * Redistributions in binary form must reproduce the above copyright notice, - this list of conditions and the following disclaimer in the documentation - and/or other materials provided with the distribution. - - * Neither the name of INRIA or ASCLEPIOS, nor the names of any contributors - may be used to endorse or promote products derived from this software - without specific prior written permission. - - * Modified source versions must be plainly marked as such, and must not be - misrepresented as being the original software. - - THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDER AND CONTRIBUTORS ``AS IS'' - AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE - IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE - ARE DISCLAIMED. IN NO EVENT SHALL THE AUTHORS OR CONTRIBUTORS BE LIABLE FOR - ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL - DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR - SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER - CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, - OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE - OF THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE. - =========================================================================*/ - -#ifndef _lut_HotMetal_h_ -#define _lut_HotMetal_h_ - -static const int HotMetal[256*3]={ -0, -1, - 2, - 4, - 5, - 7, - 8, - 9, - 11, - 12, - 14, - 15, - 16, - 18, - 19, - 21, - 22, - 23, - 25, - 26, - 28, - 29, - 30, - 32, - 33, - 35, - 36, - 37, - 39, - 40, - 42, - 43, - 44, - 46, - 47, - 49, - 50, - 51, - 53, - 54, - 56, - 57, - 58, - 60, - 61, - 63, - 64, - 65, - 67, - 68, - 70, - 71, - 72, - 74, - 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107, - 111, - 115, - 119, - 123, - 127, - 131, - 135, - 139, - 143, - 147, - 151, - 155, - 159, - 163, - 167, - 171, - 175, - 179, - 183, - 187, - 191, - 195, - 199, - 203, - 207, - 211, - 215, - 219, - 223, - 227, - 231, - 235, - 239, - 243, - 247, - 251 -}; - -#endif diff --git a/branches/ColorViewer/ExternalCode/MegaVTK/vtkRenderingAddOn/lut/LONI.h b/branches/ColorViewer/ExternalCode/MegaVTK/vtkRenderingAddOn/lut/LONI.h deleted file mode 100644 index 9d87c7b9..00000000 --- a/branches/ColorViewer/ExternalCode/MegaVTK/vtkRenderingAddOn/lut/LONI.h +++ /dev/null @@ -1,261 +0,0 @@ -/*========================================================================= - -Program: vtkINRIA3D -Module: $Id: LONI.h 477 2007-11-20 17:46:10Z filus $ -Language: C++ -Author: $Author: filus $ -Date: $Date: 2007-11-20 12:46:10 -0500 (Tue, 20 Nov 2007) $ -Version: $Revision: 477 $ - -Copyright (c) 2007 INRIA - Asclepios Project. All rights reserved. - -This software is distributed WITHOUT ANY WARRANTY; without even -the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR -PURPOSE. See the above copyright notices for more information. - -=========================================================================*/ - -/*======================================================================== - Copyright (c) INRIA - ASCLEPIOS Project (http://www-sop.inria.fr/asclepios). - All rights reserved. - - Redistribution and use in source and binary forms, with or without - modification, are permitted provided that the following conditions are met: - - * Redistributions of source code must retain the above copyright notice, - this list of conditions and the following disclaimer. - - * Redistributions in binary form must reproduce the above copyright notice, - this list of conditions and the following disclaimer in the documentation - and/or other materials provided with the distribution. - - * Neither the name of INRIA or ASCLEPIOS, nor the names of any contributors - may be used to endorse or promote products derived from this software - without specific prior written permission. - - * Modified source versions must be plainly marked as such, and must not be - misrepresented as being the original software. - - THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDER AND CONTRIBUTORS ``AS IS'' - AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE - IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE - ARE DISCLAIMED. IN NO EVENT SHALL THE AUTHORS OR CONTRIBUTORS BE LIABLE FOR - ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL - DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR - SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER - CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, - OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE - OF THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE. - =========================================================================*/ - -#ifndef _lut_LONI_h_ -#define _lut_LONI_h_ - -static const float LONI[203][3] ={ - {0, 0, 1.0000}, - {0, 0, 1.0000}, - {0, 0, 1.0000}, - {0, 0, 1.0000}, - {0, 0, 1.0000}, - {0, 0, 1.0000}, - {0, 0, 1.0000}, - {0, 0, 1.0000}, - {0, 0, 1.0000}, - {0, 0, 1.0000}, - {0, 0, 1.0000}, - {0, 0, 1.0000}, - {0, 0, 1.0000}, - {0, 0, 1.0000}, - {0, 0, 1.0000}, - {0, 0, 1.0000}, - {0, 0, 1.0000}, - {0, 0, 1.0000}, - {0, 0, 1.0000}, - {0, 0, 1.0000}, - {0, 0.0244, 1.0000}, - {0, 0.0488, 1.0000}, - {0, 0.0732, 1.0000}, - {0, 0.0976, 1.0000}, - {0, 0.1220, 1.0000}, - {0, 0.1463, 1.0000}, - {0, 0.1707, 1.0000}, - {0, 0.1951, 1.0000}, - {0, 0.2195, 1.0000}, - {0, 0.2439, 1.0000}, - {0, 0.2683, 1.0000}, - {0, 0.2927, 1.0000}, - {0, 0.3171, 1.0000}, - {0, 0.3415, 1.0000}, - {0, 0.3659, 1.0000}, - {0, 0.3902, 1.0000}, - {0, 0.4146, 1.0000}, - {0, 0.4390, 1.0000}, - {0, 0.4634, 1.0000}, - {0, 0.4878, 1.0000}, - {0, 0.5122, 1.0000}, - {0, 0.5366, 1.0000}, - {0, 0.5610, 1.0000}, - {0, 0.5854, 1.0000}, - {0, 0.6098, 1.0000}, - {0, 0.6341, 1.0000}, - {0, 0.6585, 1.0000}, - {0, 0.6829, 1.0000}, - {0, 0.7073, 1.0000}, - {0, 0.7317, 1.0000}, - {0, 0.7561, 1.0000}, - {0, 0.7805, 1.0000}, - {0, 0.8049, 1.0000}, - {0, 0.8293, 1.0000}, - {0, 0.8537, 1.0000}, - {0, 0.8780, 1.0000}, - {0, 0.9024, 1.0000}, - {0, 0.9268, 1.0000}, - {0, 0.9512, 1.0000}, - {0, 0.9756, 1.0000}, - {0, 1.0000, 1.0000}, - {0, 1.0000, 0.9756}, - {0, 1.0000, 0.9512}, - {0, 1.0000, 0.9268}, - {0, 1.0000, 0.9024}, - {0, 1.0000, 0.8780}, - {0, 1.0000, 0.8537}, - {0, 1.0000, 0.8293}, - {0, 1.0000, 0.8049}, - {0, 1.0000, 0.7805}, - {0, 1.0000, 0.7561}, - {0, 1.0000, 0.7317}, - {0, 1.0000, 0.7073}, - {0, 1.0000, 0.6829}, - {0, 1.0000, 0.6585}, - {0, 1.0000, 0.6341}, - {0, 1.0000, 0.6098}, - {0, 1.0000, 0.5854}, - {0, 1.0000, 0.5610}, - {0, 1.0000, 0.5366}, - {0, 1.0000, 0.5122}, - {0, 1.0000, 0.4878}, - {0, 1.0000, 0.4634}, - {0, 1.0000, 0.4390}, - {0, 1.0000, 0.4146}, - {0, 1.0000, 0.3902}, - {0, 1.0000, 0.3659}, - {0, 1.0000, 0.3415}, - {0, 1.0000, 0.3171}, - {0, 1.0000, 0.2927}, - {0, 1.0000, 0.2683}, - {0, 1.0000, 0.2439}, - {0, 1.0000, 0.2195}, - {0, 1.0000, 0.1951}, - {0, 1.0000, 0.1707}, - {0, 1.0000, 0.1463}, - {0, 1.0000, 0.1220}, - {0, 1.0000, 0.0976}, - {0, 1.0000, 0.0732}, - {0, 1.0000, 0.0488}, - {0, 1.0000, 0.0244}, - {0, 1.0000, 0}, - {0.0244, 1.0000, 0}, - {0.0488, 1.0000, 0}, - {0.0732, 1.0000, 0}, - {0.0976, 1.0000, 0}, - {0.1220, 1.0000, 0}, - {0.1463, 1.0000, 0}, - {0.1707, 1.0000, 0}, - {0.1951, 1.0000, 0}, - {0.2195, 1.0000, 0}, - {0.2439, 1.0000, 0}, - {0.2683, 1.0000, 0}, - {0.2927, 1.0000, 0}, - {0.3171, 1.0000, 0}, - {0.3415, 1.0000, 0}, - {0.3659, 1.0000, 0}, - {0.3902, 1.0000, 0}, - {0.4146, 1.0000, 0}, - {0.4390, 1.0000, 0}, - {0.4634, 1.0000, 0}, - {0.4878, 1.0000, 0}, - {0.5122, 1.0000, 0}, - {0.5366, 1.0000, 0}, - {0.5610, 1.0000, 0}, - {0.5854, 1.0000, 0}, - {0.6098, 1.0000, 0}, - {0.6341, 1.0000, 0}, - {0.6585, 1.0000, 0}, - {0.6829, 1.0000, 0}, - {0.7073, 1.0000, 0}, - {0.7317, 1.0000, 0}, - {0.7561, 1.0000, 0}, - {0.7805, 1.0000, 0}, - {0.8049, 1.0000, 0}, - {0.8293, 1.0000, 0}, - {0.8537, 1.0000, 0}, - {0.8780, 1.0000, 0}, - {0.9024, 1.0000, 0}, - {0.9268, 1.0000, 0}, - {0.9512, 1.0000, 0}, - {0.9756, 1.0000, 0}, - {1.0000, 1.0000, 0}, - {1.0000, 0.9756, 0}, - {1.0000, 0.9512, 0}, - {1.0000, 0.9268, 0}, - {1.0000, 0.9024, 0}, - {1.0000, 0.8780, 0}, - {1.0000, 0.8537, 0}, - {1.0000, 0.8293, 0}, - {1.0000, 0.8049, 0}, - {1.0000, 0.7805, 0}, - {1.0000, 0.7561, 0}, - {1.0000, 0.7317, 0}, - {1.0000, 0.7073, 0}, - {1.0000, 0.6829, 0}, - {1.0000, 0.6585, 0}, - {1.0000, 0.6341, 0}, - {1.0000, 0.6098, 0}, - {1.0000, 0.5854, 0}, - {1.0000, 0.5610, 0}, - {1.0000, 0.5366, 0}, - {1.0000, 0.5122, 0}, - {1.0000, 0.4878, 0}, - {1.0000, 0.4634, 0}, - {1.0000, 0.4390, 0}, - {1.0000, 0.4146, 0}, - {1.0000, 0.3902, 0}, - {1.0000, 0.3659, 0}, - {1.0000, 0.3415, 0}, - {1.0000, 0.3171, 0}, - {1.0000, 0.2927, 0}, - {1.0000, 0.2683, 0}, - {1.0000, 0.2439, 0}, - {1.0000, 0.2195, 0}, - {1.0000, 0.1951, 0}, - {1.0000, 0.1707, 0}, - {1.0000, 0.1463, 0}, - {1.0000, 0.1220, 0}, - {1.0000, 0.0976, 0}, - {1.0000, 0.0732, 0}, - {1.0000, 0.0488, 0}, - {1.0000, 0.0244, 0}, - {1.0000, 0, 0}, - {1.0000, 0, 0}, - {1.0000, 0, 0}, - {1.0000, 0, 0}, - {1.0000, 0, 0}, - {1.0000, 0, 0}, - {1.0000, 0, 0}, - {1.0000, 0, 0}, - {1.0000, 0, 0}, - {1.0000, 0, 0}, - {1.0000, 0, 0}, - {1.0000, 0, 0}, - {1.0000, 0, 0}, - {1.0000, 0, 0}, - {1.0000, 0, 0}, - {1.0000, 0, 0}, - {1.0000, 0, 0}, - {1.0000, 0, 0}, - {1.0000, 0, 0}, - {1.0000, 0, 0}}; - - - -#endif diff --git a/branches/ColorViewer/ExternalCode/MegaVTK/vtkRenderingAddOn/lut/LONI2.h b/branches/ColorViewer/ExternalCode/MegaVTK/vtkRenderingAddOn/lut/LONI2.h deleted file mode 100644 index 85d9e877..00000000 --- a/branches/ColorViewer/ExternalCode/MegaVTK/vtkRenderingAddOn/lut/LONI2.h +++ /dev/null @@ -1,176 +0,0 @@ -/*========================================================================= - -Program: vtkINRIA3D -Module: $Id: LONI2.h 477 2007-11-20 17:46:10Z filus $ -Language: C++ -Author: $Author: filus $ -Date: $Date: 2007-11-20 12:46:10 -0500 (Tue, 20 Nov 2007) $ -Version: $Revision: 477 $ - -Copyright (c) 2007 INRIA - Asclepios Project. All rights reserved. - -This software is distributed WITHOUT ANY WARRANTY; without even -the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR -PURPOSE. See the above copyright notices for more information. - -=========================================================================*/ - -/*======================================================================== - Copyright (c) INRIA - ASCLEPIOS Project (http://www-sop.inria.fr/asclepios). - All rights reserved. - - Redistribution and use in source and binary forms, with or without - modification, are permitted provided that the following conditions are met: - - * Redistributions of source code must retain the above copyright notice, - this list of conditions and the following disclaimer. - - * Redistributions in binary form must reproduce the above copyright notice, - this list of conditions and the following disclaimer in the documentation - and/or other materials provided with the distribution. - - * Neither the name of INRIA or ASCLEPIOS, nor the names of any contributors - may be used to endorse or promote products derived from this software - without specific prior written permission. - - * Modified source versions must be plainly marked as such, and must not be - misrepresented as being the original software. - - THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDER AND CONTRIBUTORS ``AS IS'' - AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE - IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE - ARE DISCLAIMED. IN NO EVENT SHALL THE AUTHORS OR CONTRIBUTORS BE LIABLE FOR - ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL - DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR - SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER - CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, - OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE - OF THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE. - =========================================================================*/ - -#ifndef _lut_LONI2_h_ -#define _lut_LONI2_h_ - -static const float LONI2[120][3] = - {{0.000000, 0.000000, 1.000000}, - {0.000000, 0.000000, 1.000000}, - {0.000000, 0.000000, 1.000000}, - {0.000000, 0.000000, 1.000000}, - {0.000000, 0.000000, 1.000000}, - {0.000000, 0.000000, 1.000000}, - {0.000000, 0.000000, 1.000000}, - {0.000000, 0.000000, 1.000000}, - {0.000000, 0.000000, 1.000000}, - {0.000000, 0.000000, 1.000000}, - {0.000000, 0.000000, 1.000000}, - {0.000000, 0.000000, 1.000000}, - {0.000000, 0.000000, 1.000000}, - {0.000000, 0.000000, 1.000000}, - {0.000000, 0.000000, 1.000000}, - {0.000000, 0.000000, 1.000000}, - {0.000000, 0.000000, 1.000000}, - {0.000000, 0.000000, 1.000000}, - {0.000000, 0.000000, 1.000000}, - {0.000000, 0.000000, 1.000000}, - {0.000000, 0.000000, 1.000000}, - {0.000000, 0.000000, 1.000000}, - {0.000000, 0.000000, 1.000000}, - {0.000000, 0.000000, 1.000000}, - {0.000000, 0.000000, 1.000000}, - {0.000000, 0.000000, 1.000000}, - {0.000000, 0.000000, 1.000000}, - {0.000000, 0.000000, 1.000000}, - {0.000000, 0.000000, 1.000000}, - {0.000000, 0.000000, 1.000000}, - {0.000000, 0.000000, 1.000000}, - {0.000000, 0.000000, 1.000000}, - {0.000000, 0.000000, 1.000000}, - {0.000000, 0.000000, 1.000000}, - {0.000000, 0.000000, 1.000000}, - {0.000000, 0.000000, 1.000000}, - {0.000000, 0.000000, 1.000000}, - {0.000000, 0.000000, 1.000000}, - {0.000000, 0.000000, 1.000000}, - {0.000000, 0.000000, 1.000000}, - {0.000000, 0.000000, 1.000000}, - {0.000000, 0.000000, 1.000000}, - {0.000000, 0.000000, 1.000000}, - {0.000000, 0.000000, 1.000000}, - {0.000000, 0.000000, 1.000000}, - {0.000000, 0.000000, 1.000000}, - {0.000000, 0.000000, 1.000000}, - {0.000000, 0.000000, 1.000000}, - {0.000000, 0.000000, 1.000000}, - {0.000000, 0.000000, 1.000000}, - {0.000000, 0.000000, 1.000000}, - {0.000000, 0.111111, 1.000000}, - {0.000000, 0.222222, 1.000000}, - {0.000000, 0.333333, 1.000000}, - {0.000000, 0.444444, 1.000000}, - {0.000000, 0.555556, 1.000000}, - {0.000000, 0.666667, 1.000000}, - {0.000000, 0.777778, 1.000000}, - {0.000000, 0.888889, 1.000000}, - {0.000000, 1.000000, 1.000000}, - {0.000000, 1.000000, 1.000000}, - {0.000000, 1.000000, 0.888889}, - {0.000000, 1.000000, 0.777778}, - {0.000000, 1.000000, 0.666667}, - {0.000000, 1.000000, 0.555556}, - {0.000000, 1.000000, 0.444444}, - {0.000000, 1.000000, 0.333333}, - {0.000000, 1.000000, 0.222222}, - {0.000000, 1.000000, 0.111111}, - {0.000000, 1.000000, 0.000000}, - {0.000000, 1.000000, 0.000000}, - {0.111111, 1.000000, 0.000000}, - {0.222222, 1.000000, 0.000000}, - {0.333333, 1.000000, 0.000000}, - {0.444444, 1.000000, 0.000000}, - {0.555556, 1.000000, 0.000000}, - {0.666667, 1.000000, 0.000000}, - {0.777778, 1.000000, 0.000000}, - {0.888889, 1.000000, 0.000000}, - {1.000000, 1.000000, 0.000000}, - {1.000000, 1.000000, 0.000000}, - {1.000000, 0.947368, 0.000000}, - {1.000000, 0.894737, 0.000000}, - {1.000000, 0.842105, 0.000000}, - {1.000000, 0.789474, 0.000000}, - {1.000000, 0.736842, 0.000000}, - {1.000000, 0.684211, 0.000000}, - {1.000000, 0.631579, 0.000000}, - {1.000000, 0.578947, 0.000000}, - {1.000000, 0.526316, 0.000000}, - {1.000000, 0.473684, 0.000000}, - {1.000000, 0.421053, 0.000000}, - {1.000000, 0.368421, 0.000000}, - {1.000000, 0.315789, 0.000000}, - {1.000000, 0.263158, 0.000000}, - {1.000000, 0.210526, 0.000000}, - {1.000000, 0.157895, 0.000000}, - {1.000000, 0.105263, 0.000000}, - {1.000000, 0.052632, 0.000000}, - {1.000000, 0.000000, 0.000000}, - {1.000000, 0.000000, 0.000000}, - {1.000000, 0.000000, 0.052632}, - {1.000000, 0.000000, 0.105263}, - {1.000000, 0.000000, 0.157895}, - {1.000000, 0.000000, 0.210526}, - {1.000000, 0.000000, 0.263158}, - {1.000000, 0.000000, 0.315789}, - {1.000000, 0.000000, 0.368421}, - {1.000000, 0.000000, 0.421053}, - {1.000000, 0.000000, 0.473684}, - {1.000000, 0.000000, 0.526316}, - {1.000000, 0.000000, 0.578947}, - {1.000000, 0.000000, 0.631579}, - {1.000000, 0.000000, 0.684211}, - {1.000000, 0.000000, 0.736842}, - {1.000000, 0.000000, 0.789474}, - {1.000000, 0.000000, 0.842105}, - {1.000000, 0.000000, 0.894737}, - {1.000000, 0.000000, 0.947368}, - {1.000000, 0.000000, 1.000000}}; - -#endif diff --git a/branches/ColorViewer/ExternalCode/MegaVTK/vtkRenderingAddOn/lut/Spectrum.h b/branches/ColorViewer/ExternalCode/MegaVTK/vtkRenderingAddOn/lut/Spectrum.h deleted file mode 100644 index 81773244..00000000 --- a/branches/ColorViewer/ExternalCode/MegaVTK/vtkRenderingAddOn/lut/Spectrum.h +++ /dev/null @@ -1,826 +0,0 @@ -/*========================================================================= - -Program: vtkINRIA3D -Module: $Id: Spectrum.h 477 2007-11-20 17:46:10Z filus $ -Language: C++ -Author: $Author: filus $ -Date: $Date: 2007-11-20 12:46:10 -0500 (Tue, 20 Nov 2007) $ -Version: $Revision: 477 $ - -Copyright (c) 2007 INRIA - Asclepios Project. All rights reserved. - -This software is distributed WITHOUT ANY WARRANTY; without even -the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR -PURPOSE. See the above copyright notices for more information. - -=========================================================================*/ - -/*======================================================================== - Copyright (c) INRIA - ASCLEPIOS Project (http://www-sop.inria.fr/asclepios). - All rights reserved. - - Redistribution and use in source and binary forms, with or without - modification, are permitted provided that the following conditions are met: - - * Redistributions of source code must retain the above copyright notice, - this list of conditions and the following disclaimer. - - * Redistributions in binary form must reproduce the above copyright notice, - this list of conditions and the following disclaimer in the documentation - and/or other materials provided with the distribution. - - * Neither the name of INRIA or ASCLEPIOS, nor the names of any contributors - may be used to endorse or promote products derived from this software - without specific prior written permission. - - * Modified source versions must be plainly marked as such, and must not be - misrepresented as being the original software. - - THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDER AND CONTRIBUTORS ``AS IS'' - AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE - IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE - ARE DISCLAIMED. IN NO EVENT SHALL THE AUTHORS OR CONTRIBUTORS BE LIABLE FOR - ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL - DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR - SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER - CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, - OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE - OF THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE. - =========================================================================*/ - -#ifndef _lut_Spectrum_h_ -#define _lut_Spectrum_h_ - -static const int Spectrum[256*3]= -{ -255, - 250, - 245, - 240, - 235, - 230, - 225, - 220, - 215, - 210, - 205, - 200, - 195, - 190, - 185, - 180, - 175, - 170, - 165, - 160, - 155, - 150, - 145, - 140, - 135, - 130, - 125, - 120, - 115, - 110, - 105, - 100, - 95, - 90, - 85, - 80, - 75, - 70, - 65, - 60, - 55, - 50, - 45, - 40, - 35, - 30, - 25, - 20, - 15, - 10, - 5, - 0, - 0, - 0, - 0, - 0, - 0, - 0, - 0, - 0, - 0, - 0, - 0, - 0, - 0, - 0, - 0, - 0, - 0, - 0, - 0, - 0, - 0, - 0, - 0, - 0, - 0, - 0, - 0, - 0, - 0, - 0, - 0, - 0, - 0, - 0, - 0, - 0, - 0, - 0, - 0, - 0, - 0, - 0, - 0, - 0, - 0, - 0, - 0, - 0, - 0, - 0, - 0, - 0, - 0, - 0, - 0, - 0, - 0, - 0, - 0, - 0, - 0, - 0, - 0, - 0, - 0, - 0, - 0, - 0, - 0, - 0, - 0, - 0, - 0, - 0, - 0, - 0, - 0, - 0, - 0, - 0, - 0, - 0, - 0, - 0, - 0, - 0, - 0, - 0, - 0, - 0, - 0, - 0, - 0, - 0, - 0, - 0, - 0, - 0, - 0, - 0, - 0, - 0, - 5, - 10, - 15, - 20, - 25, - 30, - 35, - 40, - 45, - 50, - 55, - 60, - 65, - 70, - 75, - 80, - 85, - 90, - 95, - 100, - 105, - 110, - 115, - 120, - 125, - 130, - 135, - 140, - 145, - 150, - 155, - 160, - 165, - 170, - 175, - 180, - 185, - 190, - 195, - 200, - 205, - 210, - 215, - 220, - 225, - 230, - 235, - 240, - 245, - 250, - 255, - 255, - 255, - 255, - 255, - 255, - 255, - 255, - 255, - 255, - 255, - 255, - 255, - 255, - 255, - 255, - 255, - 255, - 255, - 255, - 255, - 255, - 255, - 255, - 255, - 255, - 255, - 255, - 255, - 255, - 255, - 255, - 255, - 255, - 255, - 255, - 255, - 255, - 255, - 255, - 255, - 255, - 255, - 255, - 255, - 255, - 255, - 255, - 255, - 255, - 255, - 255, - 0, - 0, - 0, - 0, - 0, - 0, - 0, - 0, - 0, - 0, - 0, - 0, - 0, - 0, - 0, - 0, - 0, - 0, - 0, - 0, - 0, - 0, - 0, - 0, - 0, - 0, - 0, - 0, - 0, - 0, - 0, - 0, - 0, - 0, - 0, - 0, - 0, - 0, - 0, - 0, - 0, - 0, - 0, - 0, - 0, - 0, - 0, - 0, - 0, - 0, - 0, - 0, - 5, - 10, - 15, - 20, - 25, - 30, - 35, - 40, - 45, - 50, - 55, - 60, - 65, - 70, - 75, - 80, - 85, - 90, - 95, - 100, - 105, - 110, - 115, - 120, - 125, - 130, - 135, - 140, - 145, - 150, - 155, - 160, - 165, - 170, - 175, - 180, - 185, - 190, - 195, - 200, - 205, - 210, - 215, - 220, - 225, - 230, - 235, - 240, - 245, - 251, - 255, - 255, - 255, - 255, - 255, - 255, - 255, - 255, - 255, - 255, - 255, - 255, - 255, - 255, - 255, - 255, - 255, - 255, - 255, - 255, - 255, - 255, - 255, - 255, - 255, - 255, - 255, - 255, - 255, - 255, - 255, - 255, - 255, - 255, - 255, - 255, - 255, - 255, - 255, - 255, - 255, - 255, - 255, - 255, - 255, - 255, - 255, - 255, - 255, - 255, - 255, - 255, - 255, - 255, - 255, - 255, - 255, - 255, - 255, - 255, - 255, - 255, - 255, - 255, - 255, - 255, - 255, - 255, - 255, - 255, - 255, - 255, - 255, - 255, - 255, - 255, - 255, - 255, - 255, - 255, - 255, - 255, - 255, - 255, - 255, - 255, - 255, - 255, - 255, - 255, - 255, - 255, - 255, - 255, - 255, - 255, - 255, - 255, - 255, - 255, - 255, - 255, - 255, - 250, - 245, - 240, - 235, - 230, - 225, - 220, - 215, - 210, - 205, - 200, - 195, - 190, - 185, - 180, - 175, - 170, - 165, - 160, - 155, - 150, - 145, - 140, - 135, - 130, - 125, - 120, - 115, - 110, - 105, - 100, - 95, - 90, - 85, - 80, - 75, - 70, - 65, - 60, - 55, - 50, - 45, - 40, - 35, - 30, - 25, - 20, - 15, - 10, - 5, - 0, - 255, - 255, - 255, - 255, - 255, - 255, - 255, - 255, - 255, - 255, - 255, - 255, - 255, - 255, - 255, - 255, - 255, - 255, - 255, - 255, - 255, - 255, - 255, - 255, - 255, - 255, - 255, - 255, - 255, - 255, - 255, - 255, - 255, - 255, - 255, - 255, - 255, - 255, - 255, - 255, - 255, - 255, - 255, - 255, - 255, - 255, - 255, - 255, - 255, - 255, - 255, - 255, - 255, - 255, - 255, - 255, - 255, - 255, - 255, - 255, - 255, - 255, - 255, - 255, - 255, - 255, - 255, - 255, - 255, - 255, - 255, - 255, - 255, - 255, - 255, - 255, - 255, - 255, - 255, - 255, - 255, - 255, - 255, - 255, - 255, - 255, - 255, - 255, - 255, - 255, - 255, - 255, - 255, - 255, - 255, - 255, - 255, - 255, - 255, - 255, - 255, - 255, - 255, - 250, - 245, - 240, - 235, - 230, - 225, - 220, - 215, - 210, - 205, - 200, - 195, - 190, - 185, - 180, - 175, - 170, - 165, - 160, - 155, - 150, - 145, - 140, - 135, - 130, - 125, - 120, - 115, - 110, - 105, - 100, - 95, - 90, - 85, - 80, - 75, - 70, - 65, - 60, - 55, - 50, - 45, - 40, - 35, - 30, - 25, - 20, - 15, - 10, - 5, - 0, - 0, - 0, - 0, - 0, - 0, - 0, - 0, - 0, - 0, - 0, - 0, - 0, - 0, - 0, - 0, - 0, - 0, - 0, - 0, - 0, - 0, - 0, - 0, - 0, - 0, - 0, - 0, - 0, - 0, - 0, - 0, - 0, - 0, - 0, - 0, - 0, - 0, - 0, - 0, - 0, - 0, - 0, - 0, - 0, - 0, - 0, - 0, - 0, - 0, - 0, - 0, - 0, - 0, - 0, - 0, - 0, - 0, - 0, - 0, - 0, - 0, - 0, - 0, - 0, - 0, - 0, - 0, - 0, - 0, - 0, - 0, - 0, - 0, - 0, - 0, - 0, - 0, - 0, - 0, - 0, - 0, - 0, - 0, - 0, - 0, - 0, - 0, - 0, - 0, - 0, - 0, - 0, - 0, - 0, - 0, - 0, - 0, - 0, - 0, - 0, - 0, - 0 -}; - -#endif diff --git a/branches/ColorViewer/ExternalCode/MegaVTK/vtkRenderingAddOn/vtkFillImageWithPolyData.cxx b/branches/ColorViewer/ExternalCode/MegaVTK/vtkRenderingAddOn/vtkFillImageWithPolyData.cxx deleted file mode 100644 index 1ac815fb..00000000 --- a/branches/ColorViewer/ExternalCode/MegaVTK/vtkRenderingAddOn/vtkFillImageWithPolyData.cxx +++ /dev/null @@ -1,547 +0,0 @@ -/*======================================================================== - Copyright (c) INRIA - ASCLEPIOS Project (http://www-sop.inria.fr/asclepios). - All rights reserved. - - Redistribution and use in source and binary forms, with or without - modification, are permitted provided that the following conditions are met: - - * Redistributions of source code must retain the above copyright notice, - this list of conditions and the following disclaimer. - - * Redistributions in binary form must reproduce the above copyright notice, - this list of conditions and the following disclaimer in the documentation - and/or other materials provided with the distribution. - - * Neither the name of INRIA or ASCLEPIOS, nor the names of any contributors - may be used to endorse or promote products derived from this software - without specific prior written permission. - - * Modified source versions must be plainly marked as such, and must not be - misrepresented as being the original software. - - THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDER AND CONTRIBUTORS ``AS IS'' - AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE - IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE - ARE DISCLAIMED. IN NO EVENT SHALL THE AUTHORS OR CONTRIBUTORS BE LIABLE FOR - ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL - DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR - SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER - CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, - OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE - OF THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE. - =========================================================================*/ - -/*========================================================================= - Modifications were made by the GoFigure Dev. Team. - while at Megason Lab, Systems biology, Harvard Medical school, 2009 - - Copyright (c) 2009, President and Fellows of Harvard College. - All rights reserved. - - Redistribution and use in source and binary forms, with or without - modification, are permitted provided that the following conditions are met: - - Redistributions of source code must retain the above copyright notice, - this list of conditions and the following disclaimer. - Redistributions in binary form must reproduce the above copyright notice, - this list of conditions and the following disclaimer in the documentation - and/or other materials provided with the distribution. - Neither the name of the President and Fellows of Harvard College - nor the names of its contributors may be used to endorse or promote - products derived from this software without specific prior written - permission. - - THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS - "AS IS" AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, - THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR - PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT OWNER OR CONTRIBUTORS - BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, - OR CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT - OF SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR PROFITS; - OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, - WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE - OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF - ADVISED OF THE POSSIBILITY OF SUCH DAMAGE. - - =========================================================================*/ - -#include "vtkFillImageWithPolyData.h" - -#include "vtkImageData.h" -#include "vtkInformation.h" -#include "vtkInformationVector.h" -#include "vtkObjectFactory.h" -#include "vtkStreamingDemandDrivenPipeline.h" -#include "vtkPoints.h" - -#include "vtkMath.h" -// extern int vtkrint(double a); - -vtkCxxRevisionMacro (vtkFillImageWithPolyData, "$Revision: 477 $"); -vtkStandardNewMacro (vtkFillImageWithPolyData); - - -vtkFillImageWithPolyData::vtkFillImageWithPolyData() -{ - this->PolyData = 0; - this->InsidePixelValue = 1.0; - this->ExtractionDirection = 0; -} - -vtkFillImageWithPolyData::~vtkFillImageWithPolyData() -{ - if( this->PolyData ) - this->PolyData->Delete(); -} - - -//---------------------------------------------------------------------------- -// The output extent is the intersection. -int vtkFillImageWithPolyData::RequestInformation ( - vtkInformation * vtkNotUsed(request), - vtkInformationVector **inputVector, - vtkInformationVector *outputVector) -{ - // get the info objects - vtkInformation* outInfo = outputVector->GetInformationObject(0); - - // copy the polydata bounding box into bbox - if( this->PolyData ) - this->PolyData->GetBounds (BBox); - - vtkDataObject::SetPointDataActiveScalarInfo(outInfo, VTK_UNSIGNED_CHAR , 1); - - return 1; -} - - -void vtkFillImageWithPolyData::PrintSelf(ostream& os, vtkIndent indent) -{ - this->Superclass::PrintSelf(os,indent); - if( this->PolyData ) - { - os << indent << "PolyData: \n"; - os << indent << *PolyData << endl; - } -} - - - - -//---------------------------------------------------------------------------- -// This templated function executes the filter for any type of data. -template -void vtkFillImageWithPolyDataExecuteZ(vtkFillImageWithPolyData *self, - int ext[6], - vtkImageData *inData, - T *in1Ptr, - vtkImageData *outData, - unsigned char *outPtr, - int id, int slice, double bbox[6]) -{ - int num0, num1, num2, numC, numP, pixSize; - int idx0, idx1, idx2; - vtkIdType in1Inc0, in1Inc1, in1Inc2; - vtkIdType outInc0, outInc1, outInc2; - unsigned long count = 0; - unsigned long target; - - numC = outData->GetNumberOfScalarComponents(); - pixSize = numC * sizeof(T); - - // Get information to march through data - inData->GetContinuousIncrements(ext, in1Inc0, in1Inc1, in1Inc2); - outData->GetContinuousIncrements(ext, outInc0, outInc1, outInc2); - num0 = ext[1] - ext[0] + 1; - num1 = ext[3] - ext[2] + 1; - num2 = ext[5] - ext[4] + 1; - - double outVal = self->GetInsidePixelValue(); - - vtkPoints* points = self->GetPolyData()->GetPoints(); - numP = self->GetPolyData()->GetNumberOfPoints(); - - double* spacing = inData->GetSpacing(); - double* origin = inData->GetOrigin(); - - target = (unsigned long)(num2*num1/50.0); - target++; - - // Loop through ouput pixels - for (idx2 = ext[4]; idx2 < ext[4]+num2; ++idx2) - { - - for (idx1 = ext[2]; !self->AbortExecute && idx1 < ext[2]+num1; ++idx1) - { - if (!id) - { - if (!(count%target)) - self->UpdateProgress(count/(50.0*target)); - count++; - } - - for (idx0 = ext[0]; idx0 < ext[0]+num0; ++idx0) - { - - double val=0.0; - if( idx2==slice) - { - double x=idx0*spacing[0]+origin[0]; - double y=idx1*spacing[1]+origin[1]; - - if( x>=bbox[0] && x<=bbox[1] && y>=bbox[2] && y<=bbox[3]) - { - double angle=0; - - for( int i=0;iGetPoint (i,p1); - points->GetPoint ((i+1)%numP,p2); - - dp1[0] = p1[0]-x; - dp1[1] = p1[1]-y; - - dp2[0] = p2[0]-x; - dp2[1] = p2[1]-y; - - angle += self->Angle2D (dp1,dp2); - - } - if( fabs (angle) >= vtkMath::Pi() ) - val = outVal; - } - } - - *outPtr=(unsigned char)(val); - ++outPtr; - in1Ptr+=in1Inc0; - } - in1Ptr += in1Inc1; - outPtr += outInc1; - } - in1Ptr += in1Inc2; - outPtr += outInc2; - } - -} - - - - -//---------------------------------------------------------------------------- -// This templated function executes the filter for any type of data. -template -void vtkFillImageWithPolyDataExecuteY(vtkFillImageWithPolyData *self, int ext[6], - vtkImageData *inData, T *in1Ptr, - vtkImageData *outData, unsigned char *outPtr, - int id, int slice, double bbox[6]) -{ - int num0, num1, num2, numC, numP, pixSize; - int idx0, idx1, idx2; - vtkIdType in1Inc0, in1Inc1, in1Inc2; - vtkIdType outInc0, outInc1, outInc2; - unsigned long count = 0; - unsigned long target; - - numC = outData->GetNumberOfScalarComponents(); - pixSize = numC * sizeof(T); - - // Get information to march through data - inData->GetContinuousIncrements(ext, in1Inc0, in1Inc1, in1Inc2); - outData->GetContinuousIncrements(ext, outInc0, outInc1, outInc2); - num0 = ext[1] - ext[0] + 1; - num1 = ext[3] - ext[2] + 1; - num2 = ext[5] - ext[4] + 1; - - vtkPoints* points = self->GetPolyData()->GetPoints(); - numP = self->GetPolyData()->GetNumberOfPoints(); - - double* spacing = inData->GetSpacing(); - double* origin = inData->GetOrigin(); - - target = (unsigned long)(num2*num1/50.0); - target++; - - // Loop through ouput pixels - for (idx2 = ext[4]; idx2 AbortExecute && idx1 < ext[2]+num1; ++idx1) - { - if (!id) - { - if (!(count%target)) - self->UpdateProgress(count/(50.0*target)); - count++; - } - - for (idx0 = ext[0]; idx0 < ext[0]+num0; ++idx0) - { - - double val=0.0; - - if( idx1==slice) - { - double angle=0; - - double x=idx0*spacing[0]+origin[0]; - double y=idx2*spacing[2]+origin[2]; - - if( x>=bbox[0] && x<=bbox[1] && y>=bbox[4] && y<=bbox[5]) - { - - for( int i=0;iGetPoint (i,p1); - points->GetPoint ((i+1)%numP,p2); - - dp1[0] = p1[0]-x; - dp1[1] = p1[2]-y; - - dp2[0] = p2[0]-x; - dp2[1] = p2[2]-y; - - angle += self->Angle2D (dp1,dp2); - } - - if( fabs (angle) >= vtkMath::Pi() ) - val = self->GetInsidePixelValue(); - } - } - - *outPtr=(unsigned char)(val); - ++outPtr; - in1Ptr+=in1Inc0; - } - in1Ptr += in1Inc1; - outPtr += outInc1; - } - in1Ptr += in1Inc2; - outPtr += outInc2; - } - -} - - - - - -//---------------------------------------------------------------------------- -// This templated function executes the filter for any type of data. -template -void vtkFillImageWithPolyDataExecuteX(vtkFillImageWithPolyData *self, int ext[6], - vtkImageData *inData, T *in1Ptr, - vtkImageData *outData, unsigned char *outPtr, - int id, int slice, double bbox[6]) -{ - int num0, num1, num2, numC, numP, pixSize; - int idx0, idx1, idx2; - vtkIdType in1Inc0, in1Inc1, in1Inc2; - vtkIdType outInc0, outInc1, outInc2; - unsigned long count = 0; - unsigned long target; - - numC = outData->GetNumberOfScalarComponents(); - pixSize = numC * sizeof(T); - - // Get information to march through data - inData->GetContinuousIncrements(ext, in1Inc0, in1Inc1, in1Inc2); - outData->GetContinuousIncrements(ext, outInc0, outInc1, outInc2); - num0 = ext[1] - ext[0] + 1; - num1 = ext[3] - ext[2] + 1; - num2 = ext[5] - ext[4] + 1; - - //get the polydata bounding box - //double bbox[6]; - //self->GetPolyData()->GetBounds (bbox); - - vtkPoints* points = self->GetPolyData()->GetPoints(); - numP = self->GetPolyData()->GetNumberOfPoints(); - - double* spacing = inData->GetSpacing(); - double* origin = inData->GetOrigin(); - - target = (unsigned long)(num2*num1/50.0); - target++; - - // Loop through ouput pixels - for (idx2 = ext[4]; idx2 < ext[4]+num2; ++idx2) - { - for (idx1 = ext[2]; !self->AbortExecute && idx1 < ext[2]+num1; ++idx1) - { - if (!id) - { - if (!(count%target)) - self->UpdateProgress(count/(50.0*target)); - count++; - } - - for (idx0 = ext[0]; idx0 < ext[0]+num0; ++idx0) - { - - double val=0.0; - - if( idx0==slice) - { - double angle=0; - - double x=idx1*spacing[1]+origin[1]; - double y=idx2*spacing[2]+origin[2]; - - if( x>=bbox[2] && x<=bbox[3] && y>=bbox[4] && y<=bbox[5]) - { - - for( int i=0;iGetPoint (i,p1); - points->GetPoint ((i+1)%numP,p2); - - dp1[0] = p1[1]-x; - dp1[1] = p1[2]-y; - - dp2[0] = p2[1]-x; - dp2[1] = p2[2]-y; - - angle += self->Angle2D (dp1,dp2); - } - - if( fabs (angle) >= vtkMath::Pi() ) - val = self->GetInsidePixelValue(); - } - } - - *outPtr=(unsigned char)(val); - ++outPtr; - in1Ptr+=in1Inc0; - } - in1Ptr += in1Inc1; - outPtr += outInc1; - } - in1Ptr += in1Inc2; - outPtr += outInc2; - } - -} - - -//---------------------------------------------------------------------------- -// This method is passed a input and output Datas, and executes the filter -// algorithm to fill the output from the inputs. -// It just executes a switch statement to call the correct function for -// the Datas data types. -void vtkFillImageWithPolyData::ThreadedRequestData( - vtkInformation * vtkNotUsed( request ), - vtkInformationVector ** vtkNotUsed( inputVector ), - vtkInformationVector * vtkNotUsed( outputVector ), - vtkImageData ***inData, - vtkImageData **outData, - int outExt[6], int id) -{ - void *inPtr1; - void *outPtr; - - if(!PolyData) - { - vtkErrorMacro("PolyData not set"); - return; - } - - if( PolyData->GetNumberOfPoints() < 3 ) - { - vtkErrorMacro("PolyData must have more than 2 points."); - return; - } - - // check for the orientation and slice to draw the ROI - int slice=0; - double* spacing = inData[0][0]->GetSpacing(); - double* origin = inData[0][0]->GetOrigin(); - - vtkPoints* points = PolyData->GetPoints(); - double pt[3]; - points->GetPoint (0,pt); - - if( ExtractionDirection > 2 || ExtractionDirection < 0 ) - { - vtkErrorMacro("Dont know extraction direction."); - } - else - { -// slice = int( vtkrint ( (pt[0]-origin[0])/spacing[0] )); - slice = static_cast< int >( - ( pt[ExtractionDirection] - origin[ExtractionDirection] ) - / spacing[ExtractionDirection ] ); - } - - inPtr1 = inData[0][0]->GetScalarPointerForExtent(outExt); - outPtr = outData[0]->GetScalarPointerForExtent(outExt); - - if( ExtractionDirection==2 ) - { - switch (inData[0][0]->GetScalarType()) - { - vtkTemplateMacro(vtkFillImageWithPolyDataExecuteZ(this, outExt, - inData[0][0],(VTK_TT *)(inPtr1), - outData[0], (unsigned char *)(outPtr), id, slice, BBox)); - default: - vtkErrorMacro(<< "Execute: Unknown ScalarType"); - return; - } - } - else - { - if ( ExtractionDirection==1 ) - { - switch (inData[0][0]->GetScalarType()) - { - - vtkTemplateMacro(vtkFillImageWithPolyDataExecuteY(this, outExt, - inData[0][0],(VTK_TT *)(inPtr1), - outData[0], (unsigned char *)(outPtr),id,slice,BBox)); - default: - vtkErrorMacro(<< "Execute: Unknown ScalarType"); - return; - } - - - } - else - { - switch (inData[0][0]->GetScalarType()) - { - vtkTemplateMacro(vtkFillImageWithPolyDataExecuteX(this, outExt, - inData[0][0],(VTK_TT *)(inPtr1), - outData[0], (unsigned char *)(outPtr),id,slice,BBox)); - default: - vtkErrorMacro(<< "Execute: Unknown ScalarType"); - return; - } - - } - - } -} - - - - -double vtkFillImageWithPolyData::Angle2D (const double dp1[2], const double dp2[2]) -{ - double dt, t1, t2; - t1 = atan2 (dp1[0],dp1[1]); - t2 = atan2 (dp2[0],dp2[1]); - - dt = t2-t1; - - while( dt > vtkMath::Pi() ) - dt -= 2. * static_cast< double >( vtkMath::Pi() ); - while( dt < -vtkMath::Pi() ) - dt += 2. * static_cast< double >( vtkMath::Pi() ); - - return dt; -} diff --git a/branches/ColorViewer/ExternalCode/MegaVTK/vtkRenderingAddOn/vtkFillImageWithPolyData.h b/branches/ColorViewer/ExternalCode/MegaVTK/vtkRenderingAddOn/vtkFillImageWithPolyData.h deleted file mode 100644 index 38351c3a..00000000 --- a/branches/ColorViewer/ExternalCode/MegaVTK/vtkRenderingAddOn/vtkFillImageWithPolyData.h +++ /dev/null @@ -1,130 +0,0 @@ -/*======================================================================== - Copyright (c) INRIA - ASCLEPIOS Project (http://www-sop.inria.fr/asclepios). - All rights reserved. - - Redistribution and use in source and binary forms, with or without - modification, are permitted provided that the following conditions are met: - - * Redistributions of source code must retain the above copyright notice, - this list of conditions and the following disclaimer. - - * Redistributions in binary form must reproduce the above copyright notice, - this list of conditions and the following disclaimer in the documentation - and/or other materials provided with the distribution. - - * Neither the name of INRIA or ASCLEPIOS, nor the names of any contributors - may be used to endorse or promote products derived from this software - without specific prior written permission. - - * Modified source versions must be plainly marked as such, and must not be - misrepresented as being the original software. - - THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDER AND CONTRIBUTORS ``AS IS'' - AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE - IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE - ARE DISCLAIMED. IN NO EVENT SHALL THE AUTHORS OR CONTRIBUTORS BE LIABLE FOR - ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL - DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR - SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER - CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, - OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE - OF THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE. - =========================================================================*/ - -/*========================================================================= - Modifications were made by the GoFigure Dev. Team. - while at Megason Lab, Systems biology, Harvard Medical school, 2009 - - Copyright (c) 2009, President and Fellows of Harvard College. - All rights reserved. - - Redistribution and use in source and binary forms, with or without - modification, are permitted provided that the following conditions are met: - - Redistributions of source code must retain the above copyright notice, - this list of conditions and the following disclaimer. - Redistributions in binary form must reproduce the above copyright notice, - this list of conditions and the following disclaimer in the documentation - and/or other materials provided with the distribution. - Neither the name of the President and Fellows of Harvard College - nor the names of its contributors may be used to endorse or promote - products derived from this software without specific prior written - permission. - - THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS - "AS IS" AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, - THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR - PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT OWNER OR CONTRIBUTORS - BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, - OR CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT - OF SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR PROFITS; - OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, - WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE - OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF - ADVISED OF THE POSSIBILITY OF SUCH DAMAGE. - - =========================================================================*/ - -#ifndef __vtkFillImageWithPolyData_h -#define __vtkFillImageWithPolyData_h - -#include "vtkThreadedImageAlgorithm.h" -#include - -class vtkFillImageWithPolyData : - public vtkThreadedImageAlgorithm -{ - - public: - static vtkFillImageWithPolyData *New(); - vtkTypeRevisionMacro (vtkFillImageWithPolyData, vtkThreadedImageAlgorithm); - void PrintSelf (ostream &os, vtkIndent indent); - - - // Set/Get the polyData: - vtkSetObjectMacro (PolyData, vtkPolyData); - vtkGetObjectMacro (PolyData, vtkPolyData); - - vtkSetMacro (InsidePixelValue, double); - vtkGetMacro (InsidePixelValue, double); - - - vtkSetMacro (ExtractionDirection, int);//0: X, 1:Y, 2:Z - vtkGetMacro (ExtractionDirection, int); - - - double Angle2D (const double dp1[2], const double dp2[2]); - - - protected: - vtkFillImageWithPolyData(); - ~vtkFillImageWithPolyData(); - - - virtual int RequestInformation (vtkInformation *, - vtkInformationVector **, - vtkInformationVector *); - - - virtual void ThreadedRequestData(vtkInformation *request, - vtkInformationVector **inputVector, - vtkInformationVector *outputVector, - vtkImageData ***inData, - vtkImageData **outData, - int extent[6], int threadId); - - private: - vtkFillImageWithPolyData (const vtkFillImageWithPolyData&); - void operator=(const vtkFillImageWithPolyData&); - - vtkPolyData* PolyData; - double InsidePixelValue; - int ExtractionDirection; - double BBox[6]; - - -}; - - - -#endif diff --git a/branches/ColorViewer/ExternalCode/MegaVTK/vtkRenderingAddOn/vtkImage3DCroppingBoxCallback.cxx b/branches/ColorViewer/ExternalCode/MegaVTK/vtkRenderingAddOn/vtkImage3DCroppingBoxCallback.cxx deleted file mode 100644 index cdf9487c..00000000 --- a/branches/ColorViewer/ExternalCode/MegaVTK/vtkRenderingAddOn/vtkImage3DCroppingBoxCallback.cxx +++ /dev/null @@ -1,127 +0,0 @@ -/*======================================================================== - Copyright (c) INRIA - ASCLEPIOS Project (http://www-sop.inria.fr/asclepios). - All rights reserved. - - Redistribution and use in source and binary forms, with or without - modification, are permitted provided that the following conditions are met: - - * Redistributions of source code must retain the above copyright notice, - this list of conditions and the following disclaimer. - - * Redistributions in binary form must reproduce the above copyright notice, - this list of conditions and the following disclaimer in the documentation - and/or other materials provided with the distribution. - - * Neither the name of INRIA or ASCLEPIOS, nor the names of any contributors - may be used to endorse or promote products derived from this software - without specific prior written permission. - - * Modified source versions must be plainly marked as such, and must not be - misrepresented as being the original software. - - THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDER AND CONTRIBUTORS ``AS IS'' - AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE - IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE - ARE DISCLAIMED. IN NO EVENT SHALL THE AUTHORS OR CONTRIBUTORS BE LIABLE FOR - ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL - DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR - SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER - CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, - OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE - OF THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE. - =========================================================================*/ - -/*========================================================================= - Modifications were made by the GoFigure Dev. Team. - while at Megason Lab, Systems biology, Harvard Medical school, 2009 - - Copyright (c) 2009, President and Fellows of Harvard College. - All rights reserved. - - Redistribution and use in source and binary forms, with or without - modification, are permitted provided that the following conditions are met: - - Redistributions of source code must retain the above copyright notice, - this list of conditions and the following disclaimer. - Redistributions in binary form must reproduce the above copyright notice, - this list of conditions and the following disclaimer in the documentation - and/or other materials provided with the distribution. - Neither the name of the President and Fellows of Harvard College - nor the names of its contributors may be used to endorse or promote - products derived from this software without specific prior written - permission. - - THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS - "AS IS" AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, - THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR - PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT OWNER OR CONTRIBUTORS - BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, - OR CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT - OF SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR PROFITS; - OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, - WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE - OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF - ADVISED OF THE POSSIBILITY OF SUCH DAMAGE. - - =========================================================================*/ - -#include "vtkImage3DCroppingBoxCallback.h" - -#include -#include - -void vtkImage3DCroppingBoxCallback::Execute ( vtkObject *caller, - unsigned long, void* ) -{ - - if( !this->VolumeMapper ) - { - return; - } - - // get the box widget - vtkBoxWidget *widget = reinterpret_cast(caller); - - if( !widget ) - { - return; - } - - - // Get the poly data defined by the vtkBoxWidget - vtkPolyData* myBox = vtkPolyData::New(); - widget->GetPolyData(myBox); - - double bounds[6]={0.0,0.0,0.0,0.0,0.0,0.0}; - this->VolumeMapper->GetBounds(bounds); - - // myBox contains 15 points and points 8 to 13 - // define the bounding box - double xmin, xmax, ymin, ymax, zmin, zmax; - double* pt = myBox->GetPoint(8); - xmin = pt[0]; - pt = myBox->GetPoint(9); - xmax = pt[0]; - pt = myBox->GetPoint(10); - ymin = pt[1]; - pt = myBox->GetPoint(11); - ymax = pt[1]; - pt = myBox->GetPoint(12); - zmin = pt[2]; - pt = myBox->GetPoint(13); - zmax = pt[2]; - - if(xminbounds[1]) xmax=bounds[1]; - if(ymax>bounds[3]) ymax=bounds[3]; - if(zmax>bounds[5]) zmax=bounds[5]; - - this->VolumeMapper->SetCroppingRegionFlagsToSubVolume(); - this->VolumeMapper->SetCroppingRegionPlanes(xmin, xmax, - ymin, ymax, - zmin, zmax); - - myBox->Delete(); -} diff --git a/branches/ColorViewer/ExternalCode/MegaVTK/vtkRenderingAddOn/vtkImage3DCroppingBoxCallback.h b/branches/ColorViewer/ExternalCode/MegaVTK/vtkRenderingAddOn/vtkImage3DCroppingBoxCallback.h deleted file mode 100644 index d611f4aa..00000000 --- a/branches/ColorViewer/ExternalCode/MegaVTK/vtkRenderingAddOn/vtkImage3DCroppingBoxCallback.h +++ /dev/null @@ -1,107 +0,0 @@ -/*======================================================================== - Copyright (c) INRIA - ASCLEPIOS Project (http://www-sop.inria.fr/asclepios). - All rights reserved. - - Redistribution and use in source and binary forms, with or without - modification, are permitted provided that the following conditions are met: - - * Redistributions of source code must retain the above copyright notice, - this list of conditions and the following disclaimer. - - * Redistributions in binary form must reproduce the above copyright notice, - this list of conditions and the following disclaimer in the documentation - and/or other materials provided with the distribution. - - * Neither the name of INRIA or ASCLEPIOS, nor the names of any contributors - may be used to endorse or promote products derived from this software - without specific prior written permission. - - * Modified source versions must be plainly marked as such, and must not be - misrepresented as being the original software. - - THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDER AND CONTRIBUTORS ``AS IS'' - AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE - IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE - ARE DISCLAIMED. IN NO EVENT SHALL THE AUTHORS OR CONTRIBUTORS BE LIABLE FOR - ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL - DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR - SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER - CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, - OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE - OF THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE. - =========================================================================*/ - -/*========================================================================= - Modifications were made by the GoFigure Dev. Team. - while at Megason Lab, Systems biology, Harvard Medical school, 2009 - - Copyright (c) 2009, President and Fellows of Harvard College. - All rights reserved. - - Redistribution and use in source and binary forms, with or without - modification, are permitted provided that the following conditions are met: - - Redistributions of source code must retain the above copyright notice, - this list of conditions and the following disclaimer. - Redistributions in binary form must reproduce the above copyright notice, - this list of conditions and the following disclaimer in the documentation - and/or other materials provided with the distribution. - Neither the name of the President and Fellows of Harvard College - nor the names of its contributors may be used to endorse or promote - products derived from this software without specific prior written - permission. - - THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS - "AS IS" AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, - THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR - PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT OWNER OR CONTRIBUTORS - BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, - OR CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT - OF SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR PROFITS; - OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, - WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE - OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF - ADVISED OF THE POSSIBILITY OF SUCH DAMAGE. - - =========================================================================*/ - -#ifndef _vtk_Image3DCroppingBoxCallback_h_ -#define _vtk_Image3DCroppingBoxCallback_h_ - -#include -#include -#include -#include - -class vtkImage3DCroppingBoxCallback: -public vtkCommand -{ - - public: - static vtkImage3DCroppingBoxCallback* New() - { return new vtkImage3DCroppingBoxCallback; } - - virtual void Execute ( vtkObject *caller, unsigned long, void* ); - - void SetVolumeMapper (vtkVolumeMapper* mapper) - { - this->VolumeMapper = mapper; - } - vtkVolumeMapper* GetVolumeMapper (void) const - { - return this->VolumeMapper; - } - - - protected: - vtkImage3DCroppingBoxCallback() : VolumeMapper( 0 ) {} - ~vtkImage3DCroppingBoxCallback(){} - - private: - - vtkVolumeMapper* VolumeMapper; - -}; - - -#endif diff --git a/branches/ColorViewer/ExternalCode/MegaVTK/vtkRenderingAddOn/vtkImage3DImagePlaneCallback.cxx b/branches/ColorViewer/ExternalCode/MegaVTK/vtkRenderingAddOn/vtkImage3DImagePlaneCallback.cxx deleted file mode 100644 index 9b613e03..00000000 --- a/branches/ColorViewer/ExternalCode/MegaVTK/vtkRenderingAddOn/vtkImage3DImagePlaneCallback.cxx +++ /dev/null @@ -1,248 +0,0 @@ -/*========================================================================= - -Program: vtkINRIA3D -Module: $Id: vtkImage3DImagePlaneCallback.cxx 665 2008-02-11 12:31:28Z ntoussaint $ -Language: C++ -Author: $Author: ntoussaint $ -Date: $Date: 2008-02-11 13:31:28 +0100 (Mon, 11 Feb 2008) $ -Version: $Revision: 665 $ - -Copyright (c) 2007 INRIA - Asclepios Project. All rights reserved. - -This software is distributed WITHOUT ANY WARRANTY; without even -the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR -PURPOSE. See the above copyright notices for more information. - -=========================================================================*/ - -/*======================================================================== - Copyright (c) INRIA - ASCLEPIOS Project (http://www-sop.inria.fr/asclepios). - All rights reserved. - - Redistribution and use in source and binary forms, with or without - modification, are permitted provided that the following conditions are met: - - * Redistributions of source code must retain the above copyright notice, - this list of conditions and the following disclaimer. - - * Redistributions in binary form must reproduce the above copyright notice, - this list of conditions and the following disclaimer in the documentation - and/or other materials provided with the distribution. - - * Neither the name of INRIA or ASCLEPIOS, nor the names of any contributors - may be used to endorse or promote products derived from this software - without specific prior written permission. - - * Modified source versions must be plainly marked as such, and must not be - misrepresented as being the original software. - - THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDER AND CONTRIBUTORS ``AS IS'' - AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE - IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE - ARE DISCLAIMED. IN NO EVENT SHALL THE AUTHORS OR CONTRIBUTORS BE LIABLE FOR - ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL - DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR - SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER - CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, - OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE - OF THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE. - =========================================================================*/ - -/*========================================================================= - Modifications were made by the GoFigure Dev. Team. - while at Megason Lab, Systems biology, Harvard Medical school, 2009 - - Copyright (c) 2009, President and Fellows of Harvard College. - All rights reserved. - - Redistribution and use in source and binary forms, with or without - modification, are permitted provided that the following conditions are met: - - Redistributions of source code must retain the above copyright notice, - this list of conditions and the following disclaimer. - Redistributions in binary form must reproduce the above copyright notice, - this list of conditions and the following disclaimer in the documentation - and/or other materials provided with the distribution. - Neither the name of the President and Fellows of Harvard College - nor the names of its contributors may be used to endorse or promote - products derived from this software without specific prior written - permission. - - THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS - "AS IS" AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, - THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR - PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT OWNER OR CONTRIBUTORS - BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, - OR CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT - OF SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR PROFITS; - OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, - WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE - OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF - ADVISED OF THE POSSIBILITY OF SUCH DAMAGE. - - =========================================================================*/ - -#include "vtkImage3DImagePlaneCallback.h" - -#include -#include -#include -#include -#include "vtkViewImage2D.h" -#include - - - -void vtkImage3DImagePlaneCallback::Execute ( vtkObject *caller, - unsigned long, - void* ) -{ - /* - if( !this->ViewImage2D ) - { - return; - } - */ - - // get the box widget -// vtkPlaneWidget *widget = reinterpret_cast(caller); - vtkPlaneWidget *widget = vtkPlaneWidget::SafeDownCast(caller); - if( !widget ) - { - return; - } - - vtkImageData* imageData = vtkImageData::SafeDownCast( widget->GetInput() ); - - if( !imageData ) - { - this->Reslice->SetInput (NULL); - return; - } - - this->Reslice->SetInput ( imageData ); - - - // Calculate appropriate pixel spacing for the reslicing - imageData->UpdateInformation(); - double spacing[3]; - imageData->GetSpacing(spacing); - - - double imOrigin[3]; - imageData->GetOrigin(imOrigin); - int extent[6]; - imageData->GetWholeExtent(extent); - double bounds[] = {imOrigin[0] + spacing[0]*extent[0], //xmin - imOrigin[0] + spacing[0]*extent[1], //xmax - imOrigin[1] + spacing[1]*extent[2], //ymin - imOrigin[1] + spacing[1]*extent[3], //ymax - imOrigin[2] + spacing[2]*extent[4], //zmin - imOrigin[2] + spacing[2]*extent[5]};//zmax - - - int i = 0; - - for (i = 0; i <= 4; i += 2 ) // reverse bounds if necessary - { - if ( bounds[i] > bounds[i+1] ) - { - double t = bounds[i+1]; - bounds[i+1] = bounds[i]; - bounds[i] = t; - } - } - - double abs_normal[3]; - widget->GetNormal(abs_normal); - double planeCenter[3]; - widget->GetCenter(planeCenter); - double nmax = 0.0; - int k = 0; - for (i = 0; i < 3; i++ ) - { - abs_normal[i] = fabs(abs_normal[i]); - if ( abs_normal[i]>nmax ) - { - nmax = abs_normal[i]; - k = i; - } - } - - // Force the plane to lie within the true image bounds along its normal - // - - if ( planeCenter[k] > bounds[2*k+1] ) - { - planeCenter[k] = bounds[2*k+1]; - } - else if ( planeCenter[k] < bounds[2*k] ) - { - planeCenter[k] = bounds[2*k]; - } - - widget->SetCenter(planeCenter); - - - - // get the planes - double point1[3], point2[3], origin[4], normal[3]; - widget->GetPoint1 (point1); - widget->GetPoint2 (point2); - widget->GetOrigin (origin); - widget->GetNormal (normal); - - double axis1[3], axis2[3]; - for(i=0; i<3; i++) - { - axis1[i] = point1[i]-origin[i]; - axis2[i] = point2[i]-origin[i]; - } - - double planeSizeX = vtkMath::Normalize(axis1); - double planeSizeY = vtkMath::Normalize(axis2); - - this->ResliceAxes->Identity(); - for (i = 0; i < 3; i++ ) - { - this->ResliceAxes->SetElement(0,i,axis1[i]); - this->ResliceAxes->SetElement(1,i,axis2[i]); - this->ResliceAxes->SetElement(2,i,normal[i]); - } - - origin[3] = 1.0; - double originXYZW[4]; - this->ResliceAxes->MultiplyPoint(origin,originXYZW); - - this->ResliceAxes->Transpose(); - double neworiginXYZW[4]; - double point[] = {originXYZW[0],originXYZW[1],originXYZW[2],originXYZW[3]}; - this->ResliceAxes->MultiplyPoint(point,neworiginXYZW); - - this->ResliceAxes->SetElement(0,3,neworiginXYZW[0]); - this->ResliceAxes->SetElement(1,3,neworiginXYZW[1]); - this->ResliceAxes->SetElement(2,3,neworiginXYZW[2]); - - this->Reslice->SetResliceAxes (this->ResliceAxes); - this->Reslice->SetInterpolationModeToLinear(); - this->Reslice->SetOutputSpacing (1.0,1.0,1.0); - this->Reslice->SetOutputOrigin (0,0,0); - this->Reslice->SetOutputExtent (0, static_cast(planeSizeX)-1, - 0, static_cast(planeSizeY)-1, - 0, 0); - - this->Reslice->Update(); - - /* - if( this->FirstRender ) - { - this->ViewImage2D->SetImage ( this->Reslice->GetOutput() ); - this->ViewImage2D->ResetCurrentPoint(); - this->ViewImage2D->ResetWindowLevel(); - this->FirstRender = false; - } - - this->ViewImage2D->Update(); - this->ViewImage2D->Render(); - */ -} diff --git a/branches/ColorViewer/ExternalCode/MegaVTK/vtkRenderingAddOn/vtkImage3DImagePlaneCallback.h b/branches/ColorViewer/ExternalCode/MegaVTK/vtkRenderingAddOn/vtkImage3DImagePlaneCallback.h deleted file mode 100644 index 5fe95398..00000000 --- a/branches/ColorViewer/ExternalCode/MegaVTK/vtkRenderingAddOn/vtkImage3DImagePlaneCallback.h +++ /dev/null @@ -1,147 +0,0 @@ -/*======================================================================== - Copyright (c) INRIA - ASCLEPIOS Project (http://www-sop.inria.fr/asclepios). - All rights reserved. - - Redistribution and use in source and binary forms, with or without - modification, are permitted provided that the following conditions are met: - - * Redistributions of source code must retain the above copyright notice, - this list of conditions and the following disclaimer. - - * Redistributions in binary form must reproduce the above copyright notice, - this list of conditions and the following disclaimer in the documentation - and/or other materials provided with the distribution. - - * Neither the name of INRIA or ASCLEPIOS, nor the names of any contributors - may be used to endorse or promote products derived from this software - without specific prior written permission. - - * Modified source versions must be plainly marked as such, and must not be - misrepresented as being the original software. - - THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDER AND CONTRIBUTORS ``AS IS'' - AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE - IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE - ARE DISCLAIMED. IN NO EVENT SHALL THE AUTHORS OR CONTRIBUTORS BE LIABLE FOR - ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL - DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR - SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER - CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, - OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE - OF THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE. - =========================================================================*/ - -/*========================================================================= - Modifications were made by the GoFigure Dev. Team. - while at Megason Lab, Systems biology, Harvard Medical school, 2009 - - Copyright (c) 2009, President and Fellows of Harvard College. - All rights reserved. - - Redistribution and use in source and binary forms, with or without - modification, are permitted provided that the following conditions are met: - - Redistributions of source code must retain the above copyright notice, - this list of conditions and the following disclaimer. - Redistributions in binary form must reproduce the above copyright notice, - this list of conditions and the following disclaimer in the documentation - and/or other materials provided with the distribution. - Neither the name of the President and Fellows of Harvard College - nor the names of its contributors may be used to endorse or promote - products derived from this software without specific prior written - permission. - - THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS - "AS IS" AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, - THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR - PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT OWNER OR CONTRIBUTORS - BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, - OR CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT - OF SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR PROFITS; - OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, - WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE - OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF - ADVISED OF THE POSSIBILITY OF SUCH DAMAGE. - - =========================================================================*/ - -#ifndef _vtk_Image3DImagePlaneCallback_h_ -#define _vtk_Image3DImagePlaneCallback_h_ - -#include -#include -#include - - -class vtkViewImage2D; - - -class vtkImage3DImagePlaneCallback: public vtkCommand -{ - - public: - - static vtkImage3DImagePlaneCallback* New() - { return new vtkImage3DImagePlaneCallback; } - - virtual void Execute ( vtkObject *caller, unsigned long, void* ); - - /* - void SetViewImage2D (vtkViewImage2D* view) - { - this->ViewImage2D = view; - this->FirstRender = true; - }*/ - - vtkImageData* GetOutput (void) const - { - return this->Reslice->GetOutput(); - } - - - virtual void Reset (void) - { - this->Reslice->SetInput (NULL); - //this->FirstRender = true; - } - - vtkImageReslice* GetReslice() - { - return this->Reslice; - } - vtkMatrix4x4* GetMatrix() - { - return this->ResliceAxes; - } - - - - - protected: - vtkImage3DImagePlaneCallback() - { - /* - this->ViewImage2D = 0; - this->FirstRender = true; - */ - this->Reslice = vtkImageReslice::New(); - this->ResliceAxes = vtkMatrix4x4::New(); - } - ~vtkImage3DImagePlaneCallback() - { - this->Reslice->Delete(); - this->ResliceAxes->Delete(); - } - - private: - /* - vtkViewImage2D* ViewImage2D; - bool FirstRender;*/ - - vtkImageReslice* Reslice; - vtkMatrix4x4* ResliceAxes; - -}; - - -#endif diff --git a/branches/ColorViewer/ExternalCode/MegaVTK/vtkRenderingAddOn/vtkImageBlendWithMask.cxx b/branches/ColorViewer/ExternalCode/MegaVTK/vtkRenderingAddOn/vtkImageBlendWithMask.cxx deleted file mode 100644 index 8152ba51..00000000 --- a/branches/ColorViewer/ExternalCode/MegaVTK/vtkRenderingAddOn/vtkImageBlendWithMask.cxx +++ /dev/null @@ -1,340 +0,0 @@ -/*========================================================================= - -Program: vtkINRIA3D -Module: $Id: vtkImageBlendWithMask.cxx 477 2007-11-20 17:46:10Z filus $ -Language: C++ -Author: $Author: filus $ -Date: $Date: 2007-11-20 12:46:10 -0500 (Tue, 20 Nov 2007) $ -Version: $Revision: 477 $ - -Copyright (c) 2007 INRIA - Asclepios Project. All rights reserved. - -This software is distributed WITHOUT ANY WARRANTY; without even -the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR -PURPOSE. See the above copyright notices for more information. - -=========================================================================*/ - -/*======================================================================== - Copyright (c) INRIA - ASCLEPIOS Project (http://www-sop.inria.fr/asclepios). - All rights reserved. - - Redistribution and use in source and binary forms, with or without - modification, are permitted provided that the following conditions are met: - - * Redistributions of source code must retain the above copyright notice, - this list of conditions and the following disclaimer. - - * Redistributions in binary form must reproduce the above copyright notice, - this list of conditions and the following disclaimer in the documentation - and/or other materials provided with the distribution. - - * Neither the name of INRIA or ASCLEPIOS, nor the names of any contributors - may be used to endorse or promote products derived from this software - without specific prior written permission. - - * Modified source versions must be plainly marked as such, and must not be - misrepresented as being the original software. - - THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDER AND CONTRIBUTORS ``AS IS'' - AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE - IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE - ARE DISCLAIMED. IN NO EVENT SHALL THE AUTHORS OR CONTRIBUTORS BE LIABLE FOR - ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL - DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR - SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER - CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, - OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE - OF THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE. - =========================================================================*/ - -/*========================================================================= - Modifications were made by the GoFigure Dev. Team. - while at Megason Lab, Systems biology, Harvard Medical school, 2009 - - Copyright (c) 2009, President and Fellows of Harvard College. - All rights reserved. - - Redistribution and use in source and binary forms, with or without - modification, are permitted provided that the following conditions are met: - - Redistributions of source code must retain the above copyright notice, - this list of conditions and the following disclaimer. - Redistributions in binary form must reproduce the above copyright notice, - this list of conditions and the following disclaimer in the documentation - and/or other materials provided with the distribution. - Neither the name of the President and Fellows of Harvard College - nor the names of its contributors may be used to endorse or promote - products derived from this software without specific prior written - permission. - - THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS - "AS IS" AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, - THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR - PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT OWNER OR CONTRIBUTORS - BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, - OR CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT - OF SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR PROFITS; - OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, - WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE - OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF - ADVISED OF THE POSSIBILITY OF SUCH DAMAGE. - - =========================================================================*/ - - - -#include "vtkImageBlendWithMask.h" - -#include "vtkImageData.h" -#include "vtkInformation.h" -#include "vtkInformationVector.h" -#include "vtkObjectFactory.h" -#include "vtkStreamingDemandDrivenPipeline.h" - -vtkCxxRevisionMacro (vtkImageBlendWithMask, "$Revision: 477 $"); -vtkStandardNewMacro (vtkImageBlendWithMask); - -vtkImageBlendWithMask::vtkImageBlendWithMask() -{ - LookupTable=0; - this->SetNumberOfInputPorts (2); -} - -vtkImageBlendWithMask::~vtkImageBlendWithMask() -{ - if( LookupTable ) - LookupTable->Delete(); -} - -//---------------------------------------------------------------------------- -void vtkImageBlendWithMask::SetImageInput(vtkImageData *in) -{ - this->SetInput1(in); -} - -//---------------------------------------------------------------------------- -void vtkImageBlendWithMask::SetMaskInput(vtkImageData *in) -{ - this->SetInput2(in); -} - -//---------------------------------------------------------------------------- -// The output extent is the intersection. -int vtkImageBlendWithMask::RequestInformation ( - vtkInformation * vtkNotUsed(request), - vtkInformationVector **inputVector, - vtkInformationVector *outputVector) -{ - // get the info objects - vtkInformation* outInfo = outputVector->GetInformationObject(0); - vtkInformation *inInfo = inputVector[0]->GetInformationObject(0); - vtkInformation *inInfo2 = inputVector[1]->GetInformationObject(0); - - int ext[6], ext2[6], idx; - - inInfo->Get(vtkStreamingDemandDrivenPipeline::WHOLE_EXTENT(),ext); - inInfo2->Get(vtkStreamingDemandDrivenPipeline::WHOLE_EXTENT(),ext2); - for (idx = 0; idx < 3; ++idx) - { - if (ext2[idx*2] > ext[idx*2]) - { - ext[idx*2] = ext2[idx*2]; - } - if (ext2[idx*2+1] < ext[idx*2+1]) - { - ext[idx*2+1] = ext2[idx*2+1]; - } - } - - outInfo->Set(vtkStreamingDemandDrivenPipeline::WHOLE_EXTENT(),ext,6); - - return 1; -} - - -void vtkImageBlendWithMask::PrintSelf(ostream& os, vtkIndent indent) -{ - this->Superclass::PrintSelf(os,indent); - if( LookupTable ) - { - os << indent << "LookupTable: \n"; - os << indent << *LookupTable << endl; - } -} - - - - -//---------------------------------------------------------------------------- -// This templated function executes the filter for any type of data. -template -void vtkImageBlendWithMaskExecute(vtkImageBlendWithMask *self, int ext[6], - vtkImageData *in1Data, T *in1Ptr, - vtkImageData *in2Data, T *in2Ptr, - vtkImageData *outData, T *outPtr, int id) -{ - int num0, num1, num2, numC, numM, pixSize; - int idx0, idx1, idx2, idxC; - vtkIdType in1Inc0, in1Inc1, in1Inc2; - vtkIdType in2Inc0, in2Inc1, in2Inc2; - vtkIdType outInc0, outInc1, outInc2; - double maskAlpha, oneMinusMaskAlpha; - unsigned long count = 0; - unsigned long target; - - numC = outData->GetNumberOfScalarComponents(); - pixSize = numC * sizeof(T); - maskAlpha = 0.5; - oneMinusMaskAlpha = 0.5; - - numM = in2Data->GetNumberOfScalarComponents(); - - // Get information to march through data - in1Data->GetContinuousIncrements(ext, in1Inc0, in1Inc1, in1Inc2); - in2Data->GetContinuousIncrements(ext, in2Inc0, in2Inc1, in2Inc2); - outData->GetContinuousIncrements(ext, outInc0, outInc1, outInc2); - num0 = ext[1] - ext[0] + 1; - num1 = ext[3] - ext[2] + 1; - num2 = ext[5] - ext[4] + 1; - - - target = (unsigned long)(num2*num1/50.0); - target++; - - // Loop through ouput pixels - for (idx2 = 0; idx2 < num2; ++idx2) - { - for (idx1 = 0; !self->AbortExecute && idx1 < num1; ++idx1) - { - if (!id) - { - if (!(count%target)) - self->UpdateProgress(count/(50.0*target)); - count++; - } - - for (idx0 = 0; idx0 < num0; ++idx0) - { - - if( int(*in2Ptr)==0 ) - { - memcpy (outPtr, in1Ptr, pixSize); - in1Ptr += numC; - outPtr += numC; - } - else - { - double color[4]; - self->GetLookupTable()->GetTableValue ((int)(*in2Ptr), color); - maskAlpha = color[3]; - oneMinusMaskAlpha = 1.0-maskAlpha; - - for(idxC = 0; idxCGetScalarPointerForExtent(outExt); - inPtr2 = inData[1][0]->GetScalarPointerForExtent(outExt); - outPtr = outData[0]->GetScalarPointerForExtent(outExt); - - tExt = inData[1][0]->GetExtent(); - if (tExt[0] > outExt[0] || tExt[1] < outExt[1] || - tExt[2] > outExt[2] || tExt[3] < outExt[3] || - tExt[4] > outExt[4] || tExt[5] < outExt[5]) - { - vtkErrorMacro("Mask extent not large enough"); - return; - } - /* - if (inData[1][0]->GetNumberOfScalarComponents() != 1) - { - vtkErrorMacro("Mask can have one component"); - }*/ - - if (inData[0][0]->GetScalarType() != outData[0]->GetScalarType() || - inData[0][0]->GetScalarType() != VTK_UNSIGNED_CHAR || - (inData[0][0]->GetNumberOfScalarComponents() != 3 && inData[0][0]->GetNumberOfScalarComponents() != 4) - /*inData[1][0]->GetScalarType() != VTK_UNSIGNED_CHAR*/) - { - vtkErrorMacro(<< "Execute: image ScalarType (" - << inData[0][0]->GetScalarType() << ") must match out ScalarType (" - << outData[0]->GetScalarType() << "), and mask scalar type (" - << inData[1][0]->GetScalarType() << ") must be unsigned char." - << "Number of input components: " << inData[0][0]->GetNumberOfScalarComponents()); - return; - } - - switch (inData[0][0]->GetScalarType()) - { - vtkTemplateMacro( - vtkImageBlendWithMaskExecute(this, outExt, - inData[0][0],(VTK_TT *)(inPtr1), - //inData[1][0],(unsigned char *)(inPtr2), - inData[1][0],(VTK_TT *)(inPtr2), - outData[0], (VTK_TT *)(outPtr),id)); - default: - vtkErrorMacro(<< "Execute: Unknown ScalarType"); - return; - } -} - - - diff --git a/branches/ColorViewer/ExternalCode/MegaVTK/vtkRenderingAddOn/vtkImageBlendWithMask.h b/branches/ColorViewer/ExternalCode/MegaVTK/vtkRenderingAddOn/vtkImageBlendWithMask.h deleted file mode 100644 index 839c6e7e..00000000 --- a/branches/ColorViewer/ExternalCode/MegaVTK/vtkRenderingAddOn/vtkImageBlendWithMask.h +++ /dev/null @@ -1,130 +0,0 @@ -/*======================================================================== - Copyright (c) INRIA - ASCLEPIOS Project (http://www-sop.inria.fr/asclepios). - All rights reserved. - - Redistribution and use in source and binary forms, with or without - modification, are permitted provided that the following conditions are met: - - * Redistributions of source code must retain the above copyright notice, - this list of conditions and the following disclaimer. - - * Redistributions in binary form must reproduce the above copyright notice, - this list of conditions and the following disclaimer in the documentation - and/or other materials provided with the distribution. - - * Neither the name of INRIA or ASCLEPIOS, nor the names of any contributors - may be used to endorse or promote products derived from this software - without specific prior written permission. - - * Modified source versions must be plainly marked as such, and must not be - misrepresented as being the original software. - - THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDER AND CONTRIBUTORS ``AS IS'' - AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE - IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE - ARE DISCLAIMED. IN NO EVENT SHALL THE AUTHORS OR CONTRIBUTORS BE LIABLE FOR - ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL - DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR - SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER - CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, - OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE - OF THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE. - =========================================================================*/ - -/*========================================================================= - Modifications were made by the GoFigure Dev. Team. - while at Megason Lab, Systems biology, Harvard Medical school, 2009 - - Copyright (c) 2009, President and Fellows of Harvard College. - All rights reserved. - - Redistribution and use in source and binary forms, with or without - modification, are permitted provided that the following conditions are met: - - Redistributions of source code must retain the above copyright notice, - this list of conditions and the following disclaimer. - Redistributions in binary form must reproduce the above copyright notice, - this list of conditions and the following disclaimer in the documentation - and/or other materials provided with the distribution. - Neither the name of the President and Fellows of Harvard College - nor the names of its contributors may be used to endorse or promote - products derived from this software without specific prior written - permission. - - THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS - "AS IS" AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, - THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR - PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT OWNER OR CONTRIBUTORS - BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, - OR CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT - OF SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR PROFITS; - OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, - WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE - OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF - ADVISED OF THE POSSIBILITY OF SUCH DAMAGE. - - =========================================================================*/ - -#ifndef __vtkImageBlendWithMask_h -#define __vtkImageBlendWithMask_h - -#include "vtkThreadedImageAlgorithm.h" -#include "vtkLookupTable.h" - -class vtkImageBlendWithMask : - public vtkThreadedImageAlgorithm -{ - public: - static vtkImageBlendWithMask *New(); - vtkTypeRevisionMacro (vtkImageBlendWithMask, vtkThreadedImageAlgorithm); - void PrintSelf (ostream &os, vtkIndent indent); - - - // Set/Get the LUT to map the mask - vtkSetObjectMacro (LookupTable, vtkLookupTable); - vtkGetObjectMacro (LookupTable, vtkLookupTable); - - - - - // Description: - // Set the input to be masked. - void SetImageInput(vtkImageData *in); - - // Description: - // Set the mask to be used. - void SetMaskInput(vtkImageData *in); - - // Description: - // Set the two inputs to this filter - virtual void SetInput1(vtkDataObject *in) { this->SetInput(0,in); } - virtual void SetInput2(vtkDataObject *in) { this->SetInput(1,in); } - - protected: - vtkImageBlendWithMask(); - ~vtkImageBlendWithMask(); - - vtkLookupTable* LookupTable; - - virtual int RequestInformation (vtkInformation *, - vtkInformationVector **, - vtkInformationVector *); - - - virtual void ThreadedRequestData(vtkInformation *request, - vtkInformationVector **inputVector, - vtkInformationVector *outputVector, - vtkImageData ***inData, - vtkImageData **outData, - int extent[6], int threadId); - - - private: - vtkImageBlendWithMask (const vtkImageBlendWithMask&); - void operator=(const vtkImageBlendWithMask&); - -}; - - - -#endif diff --git a/branches/ColorViewer/ExternalCode/MegaVTK/vtkRenderingAddOn/vtkInteractorStyleImage2D.cxx b/branches/ColorViewer/ExternalCode/MegaVTK/vtkRenderingAddOn/vtkInteractorStyleImage2D.cxx deleted file mode 100644 index 8a00677b..00000000 --- a/branches/ColorViewer/ExternalCode/MegaVTK/vtkRenderingAddOn/vtkInteractorStyleImage2D.cxx +++ /dev/null @@ -1,328 +0,0 @@ -/*======================================================================== - Copyright (c) INRIA - ASCLEPIOS Project (http://www-sop.inria.fr/asclepios). - All rights reserved. - - Redistribution and use in source and binary forms, with or without - modification, are permitted provided that the following conditions are met: - - * Redistributions of source code must retain the above copyright notice, - this list of conditions and the following disclaimer. - - * Redistributions in binary form must reproduce the above copyright notice, - this list of conditions and the following disclaimer in the documentation - and/or other materials provided with the distribution. - - * Neither the name of INRIA or ASCLEPIOS, nor the names of any contributors - may be used to endorse or promote products derived from this software - without specific prior written permission. - - * Modified source versions must be plainly marked as such, and must not be - misrepresented as being the original software. - - THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDER AND CONTRIBUTORS ``AS IS'' - AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE - IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE - ARE DISCLAIMED. IN NO EVENT SHALL THE AUTHORS OR CONTRIBUTORS BE LIABLE FOR - ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL - DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR - SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER - CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, - OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE - OF THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE. - =========================================================================*/ - -/*========================================================================= - Modifications were made by the GoFigure Dev. Team. - while at Megason Lab, Systems biology, Harvard Medical school, 2009 - - Copyright (c) 2009, President and Fellows of Harvard College. - All rights reserved. - - Redistribution and use in source and binary forms, with or without - modification, are permitted provided that the following conditions are met: - - Redistributions of source code must retain the above copyright notice, - this list of conditions and the following disclaimer. - Redistributions in binary form must reproduce the above copyright notice, - this list of conditions and the following disclaimer in the documentation - and/or other materials provided with the distribution. - Neither the name of the President and Fellows of Harvard College - nor the names of its contributors may be used to endorse or promote - products derived from this software without specific prior written - permission. - - THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS - "AS IS" AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, - THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR - PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT OWNER OR CONTRIBUTORS - BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, - OR CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT - OF SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR PROFITS; - OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, - WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE - OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF - ADVISED OF THE POSSIBILITY OF SUCH DAMAGE. - - =========================================================================*/ - -#include "vtkInteractorStyleImage2D.h" - -#include "vtkAbstractPropPicker.h" -#include "vtkAssemblyPath.h" -#include "vtkMath.h" -#include "vtkObjectFactory.h" -#include "vtkRenderWindowInteractor.h" -#include -#include -#include -#include -#include "vtkViewImage2DCommand.h" - - -vtkCxxRevisionMacro (vtkInteractorStyleImage2D, "$Revision: 752 $"); -vtkStandardNewMacro (vtkInteractorStyleImage2D); - - -//---------------------------------------------------------------------------- -vtkInteractorStyleImage2D::vtkInteractorStyleImage2D() -{ - this->SliceStep = 0; - this->RequestedPosition = new int[2]; - this->RequestedPosition[0] = this->RequestedPosition[1] = 0; -} - -//---------------------------------------------------------------------------- -vtkInteractorStyleImage2D::~vtkInteractorStyleImage2D() -{ - delete this->RequestedPosition; -} - -//---------------------------------------------------------------------------- -void vtkInteractorStyleImage2D::OnMouseMove() -{ - int x = this->Interactor->GetEventPosition()[0]; - int y = this->Interactor->GetEventPosition()[1]; - - switch (this->State) - { - case VTKIS_SLICE_MOVE: - this->FindPokedRenderer(x, y); - this->SliceMove(); - this->InvokeEvent(vtkCommand::InteractionEvent, NULL); - this->Superclass::OnMouseMove(); - break; - case VTKIS_DOLLY: - this->InvokeEvent(vtkViewImage2DCommand::ZoomEvent); - break; - case VTKIS_PAN: - this->InvokeEvent(vtkViewImage2DCommand::PanEvent); - break; - default: - this->Superclass::OnMouseMove(); - break; - } - -// this->RequestedPosition = this->Interactor->GetEventPosition(); - this->InvokeEvent (vtkCommand::InteractionEvent); - -// -/// NOTE:12 MAR 2009 -/// This is a really dirty solution: it breaks the "natural" behavior of the vtkViewImage2D -/// alone (not in a Collection: synchronized view); -// this->Superclass::OnMouseMove(); -} - - -//---------------------------------------------------------------------------- -void vtkInteractorStyleImage2D::OnLeftButtonDown() -{ - int x = this->Interactor->GetEventPosition()[0]; - int y = this->Interactor->GetEventPosition()[1]; - - this->FindPokedRenderer(x, y); - if ( !this->CurrentRenderer ) - return; - - if (this->Interactor->GetRepeatCount()) - { - this->RequestedPosition[0] = x; - this->RequestedPosition[1] = y; - this->InvokeEvent (vtkViewImage2DCommand::RequestedPositionEvent); - } - - this->Superclass::OnLeftButtonDown(); -} - - -//---------------------------------------------------------------------------- -void vtkInteractorStyleImage2D::OnLeftButtonUp() -{ - this->Superclass::OnLeftButtonUp(); -} - -//---------------------------------------------------------------------------- -void vtkInteractorStyleImage2D::OnMiddleButtonDown() -{ - int x = this->Interactor->GetEventPosition()[0]; - int y = this->Interactor->GetEventPosition()[1]; - - this->FindPokedRenderer(x, y); - if ( !this->CurrentRenderer ) - return; - - this->Superclass::OnMiddleButtonDown(); -} - -//---------------------------------------------------------------------------- -void vtkInteractorStyleImage2D::OnMiddleButtonUp() -{ - this->Superclass::OnMiddleButtonUp(); -} - -//---------------------------------------------------------------------------- -void vtkInteractorStyleImage2D::OnRightButtonDown() -{ - this->Superclass::OnRightButtonDown(); -} - -//---------------------------------------------------------------------------- -void vtkInteractorStyleImage2D::OnRightButtonUp() -{ - this->Superclass::OnRightButtonUp(); -} - -//---------------------------------------------------------------------------- -void vtkInteractorStyleImage2D::OnChar() -{ - vtkRenderWindowInteractor *rwi = this->Interactor; - - switch( rwi->GetKeyCode() ) - { - case 'o': - { - this->InvokeEvent (vtkViewImage2DCommand::ResetViewerEvent, this); - break; - } - } - this->Superclass::OnChar(); -} - -//---------------------------------------------------------------------------- -void vtkInteractorStyleImage2D::OnKeyUp() -{ - vtkRenderWindowInteractor *rwi = this->Interactor; - - if (!strcmp (rwi->GetKeySym(),"Up")) - { - this->SliceStep = 1; - this->StartSliceMove(); - this->SliceMove(); - this->EndSliceMove(); - } - else if(!strcmp (rwi->GetKeySym(),"Down")) - { - this->SliceStep = -1; - this->StartSliceMove(); - this->SliceMove(); - this->EndSliceMove(); - } - else if (!strcmp (rwi->GetKeySym(),"o")) - { - this->InvokeEvent (vtkViewImage2DCommand::ResetViewerEvent, this); - } - - - this->Superclass::OnKeyUp(); -} - -//---------------------------------------------------------------------------- -void vtkInteractorStyleImage2D::OnKeyPress() -{ - this->Superclass::OnKeyPress(); -} - -//---------------------------------------------------------------------------- -void vtkInteractorStyleImage2D::OnKeyRelease() -{ - this->Superclass::OnKeyRelease(); -} - -//---------------------------------------------------------------------------- -void -vtkInteractorStyleImage2D::StartSliceMove() -{ - if ((this->State != VTKIS_NONE) && (this->State != VTKIS_PICK)) - { - return; - } - this->StartState(VTKIS_SLICE_MOVE); - this->InvokeEvent(vtkViewImage2DCommand::StartSliceMoveEvent, this); -} - -//---------------------------------------------------------------------------- -void -vtkInteractorStyleImage2D::EndSliceMove() -{ - if (this->State != VTKIS_SLICE_MOVE) - { - return; - } - this->InvokeEvent(vtkViewImage2DCommand::EndSliceMoveEvent, this); - this->StopState(); -} - -//---------------------------------------------------------------------------- -void -vtkInteractorStyleImage2D::SliceMove() -{ - if (this->State != VTKIS_SLICE_MOVE) - { - return; - } - this->InvokeEvent(vtkViewImage2DCommand::SliceMoveEvent, this); -} - -void -vtkInteractorStyleImage2D::OnMouseWheelForward() -{ - this->StartSliceMove(); - this->SliceStep = static_cast< int >( this->MouseWheelMotionFactor ); - this->SliceMove(); - this->EndSliceMove(); -} -void -vtkInteractorStyleImage2D::OnMouseWheelBackward() -{ - this->StartSliceMove(); - this->SliceStep = static_cast< int >( -this->MouseWheelMotionFactor ); - this->SliceMove(); - this->EndSliceMove(); -} - -// void vtkInteractorStyleImage2D::PropagateCameraFocalAndPosition() -// { -// if( !this->GetView() ) -// { -// return; -// } - -// //double pos[3], focal[3]; - -// if( !this->GetView()->GetRenderer() ) -// { -// return; -// } - -// vtkCamera* camera = this->GetView()->GetRenderer()->GetActiveCamera(); -// double* focal = camera->GetFocalPoint (); -// double* pos = camera->GetPosition (); - -// bool LinkCamera = this->GetView()->GetLinkCameraFocalAndPosition(); -// this->GetView()->SetLinkCameraFocalAndPosition (false); -// this->GetView()->SyncSetCameraFocalAndPosition (focal, pos); -// this->GetView()->SetLinkCameraFocalAndPosition ( LinkCamera ); - -// //this->GetView()->Render(); - - -// } diff --git a/branches/ColorViewer/ExternalCode/MegaVTK/vtkRenderingAddOn/vtkInteractorStyleImage2D.h b/branches/ColorViewer/ExternalCode/MegaVTK/vtkRenderingAddOn/vtkInteractorStyleImage2D.h deleted file mode 100644 index 261385c1..00000000 --- a/branches/ColorViewer/ExternalCode/MegaVTK/vtkRenderingAddOn/vtkInteractorStyleImage2D.h +++ /dev/null @@ -1,119 +0,0 @@ -/*======================================================================== - Copyright (c) INRIA - ASCLEPIOS Project (http://www-sop.inria.fr/asclepios). - All rights reserved. - - Redistribution and use in source and binary forms, with or without - modification, are permitted provided that the following conditions are met: - - * Redistributions of source code must retain the above copyright notice, - this list of conditions and the following disclaimer. - - * Redistributions in binary form must reproduce the above copyright notice, - this list of conditions and the following disclaimer in the documentation - and/or other materials provided with the distribution. - - * Neither the name of INRIA or ASCLEPIOS, nor the names of any contributors - may be used to endorse or promote products derived from this software - without specific prior written permission. - - * Modified source versions must be plainly marked as such, and must not be - misrepresented as being the original software. - - THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDER AND CONTRIBUTORS ``AS IS'' - AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE - IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE - ARE DISCLAIMED. IN NO EVENT SHALL THE AUTHORS OR CONTRIBUTORS BE LIABLE FOR - ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL - DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR - SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER - CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, - OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE - OF THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE. - =========================================================================*/ - -/*========================================================================= - Modifications were made by the GoFigure Dev. Team. - while at Megason Lab, Systems biology, Harvard Medical school, 2009 - - Copyright (c) 2009, President and Fellows of Harvard College. - All rights reserved. - - Redistribution and use in source and binary forms, with or without - modification, are permitted provided that the following conditions are met: - - Redistributions of source code must retain the above copyright notice, - this list of conditions and the following disclaimer. - Redistributions in binary form must reproduce the above copyright notice, - this list of conditions and the following disclaimer in the documentation - and/or other materials provided with the distribution. - Neither the name of the President and Fellows of Harvard College - nor the names of its contributors may be used to endorse or promote - products derived from this software without specific prior written - permission. - - THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS - "AS IS" AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, - THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR - PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT OWNER OR CONTRIBUTORS - BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, - OR CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT - OF SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR PROFITS; - OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, - WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE - OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF - ADVISED OF THE POSSIBILITY OF SUCH DAMAGE. - - =========================================================================*/ - -#ifndef _vtk_InteractorStyleImage2D_h_ -#define _vtk_InteractorStyleImage2D_h_ - -#include - -#define VTKIS_SLICE_MOVE 5051 - -class vtkInteractorStyleImage2D : - public vtkInteractorStyleImage -{ - public: - static vtkInteractorStyleImage2D *New(); - vtkTypeRevisionMacro (vtkInteractorStyleImage2D, vtkInteractorStyleImage); - - virtual void OnMouseMove(); - virtual void OnLeftButtonDown(); - virtual void OnLeftButtonUp(); - virtual void OnMiddleButtonDown(); - virtual void OnMiddleButtonUp(); - virtual void OnRightButtonDown(); - virtual void OnRightButtonUp(); - virtual void OnMouseWheelForward(); - virtual void OnMouseWheelBackward(); - virtual void OnChar(); - virtual void OnKeyUp(); - virtual void OnKeyPress(); - virtual void OnKeyRelease(); - - virtual void StartSliceMove(); - virtual void SliceMove(); - virtual void EndSliceMove(); - - - vtkGetMacro( SliceStep, int ); - int* GetRequestedPosition(void) - { return this->RequestedPosition; } - - protected: - vtkInteractorStyleImage2D(); - ~vtkInteractorStyleImage2D(); - - int SliceStep; - int* RequestedPosition; - - private: - - vtkInteractorStyleImage2D(const vtkInteractorStyleImage2D&); // Not implemented. - void operator=(const vtkInteractorStyleImage2D&); // Not implemented. - -}; - -#endif diff --git a/branches/ColorViewer/ExternalCode/MegaVTK/vtkRenderingAddOn/vtkLookupTableManager.cxx b/branches/ColorViewer/ExternalCode/MegaVTK/vtkRenderingAddOn/vtkLookupTableManager.cxx deleted file mode 100644 index f690fe9d..00000000 --- a/branches/ColorViewer/ExternalCode/MegaVTK/vtkRenderingAddOn/vtkLookupTableManager.cxx +++ /dev/null @@ -1,420 +0,0 @@ -/*========================================================================= - -Program: vtkINRIA3D -Module: $Id: vtkLookupTableManager.cxx 842 2008-05-20 16:57:09Z ntoussaint $ -Language: C++ -Author: $Author: ntoussaint $ -Date: $Date: 2008-05-20 12:57:09 -0400 (Tue, 20 May 2008) $ -Version: $Revision: 842 $ - -Copyright (c) 2007 INRIA - Asclepios Project. All rights reserved. - -This software is distributed WITHOUT ANY WARRANTY; without even -the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR -PURPOSE. See the above copyright notices for more information. - -=========================================================================*/ - -/*======================================================================== - Copyright (c) INRIA - ASCLEPIOS Project (http://www-sop.inria.fr/asclepios). - All rights reserved. - - Redistribution and use in source and binary forms, with or without - modification, are permitted provided that the following conditions are met: - - * Redistributions of source code must retain the above copyright notice, - this list of conditions and the following disclaimer. - - * Redistributions in binary form must reproduce the above copyright notice, - this list of conditions and the following disclaimer in the documentation - and/or other materials provided with the distribution. - - * Neither the name of INRIA or ASCLEPIOS, nor the names of any contributors - may be used to endorse or promote products derived from this software - without specific prior written permission. - - * Modified source versions must be plainly marked as such, and must not be - misrepresented as being the original software. - - THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDER AND CONTRIBUTORS ``AS IS'' - AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE - IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE - ARE DISCLAIMED. IN NO EVENT SHALL THE AUTHORS OR CONTRIBUTORS BE LIABLE FOR - ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL - DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR - SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER - CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, - OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE - OF THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE. - =========================================================================*/ - -/*========================================================================= - Modifications were made by the GoFigure Dev. Team. - while at Megason Lab, Systems biology, Harvard Medical school, 2009 - - Copyright (c) 2009, President and Fellows of Harvard College. - All rights reserved. - - Redistribution and use in source and binary forms, with or without - modification, are permitted provided that the following conditions are met: - - Redistributions of source code must retain the above copyright notice, - this list of conditions and the following disclaimer. - Redistributions in binary form must reproduce the above copyright notice, - this list of conditions and the following disclaimer in the documentation - and/or other materials provided with the distribution. - Neither the name of the President and Fellows of Harvard College - nor the names of its contributors may be used to endorse or promote - products derived from this software without specific prior written - permission. - - THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS - "AS IS" AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, - THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR - PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT OWNER OR CONTRIBUTORS - BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, - OR CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT - OF SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR PROFITS; - OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, - WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE - OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF - ADVISED OF THE POSSIBILITY OF SUCH DAMAGE. - - =========================================================================*/ - -#include "vtkLookupTableManager.h" -#include - -vtkCxxRevisionMacro(vtkLookupTableManager, "$Revision: 842 $"); -vtkStandardNewMacro(vtkLookupTableManager); - -#include "lut/Spectrum.h" -#include "lut/HotMetal.h" -#include "lut/GEColor.h" -#include "lut/Flow.h" -#include "lut/LONI.h" -#include "lut/LONI2.h" -#include "lut/Asymmetry.h" - -#include - -vtkLookupTableManager::vtkLookupTableManager() -{} - - -vtkLookupTableManager::~vtkLookupTableManager() -{} - - -std::vector vtkLookupTableManager::GetAvailableLookupTables() -{ - std::string lutNames[]={"B/W", "B/W Inverse", "Spectrum", "HotMetal", "GEColor", "Flow", "LONI", "LONI2", "Asymmetry", "P-Value", "ROI"}; - - std::vector v_lutNames; - for( int i=0; i<10; i++) - { - v_lutNames.push_back(lutNames[i]); - } - - return v_lutNames; -} - - -vtkLookupTable* vtkLookupTableManager::GetLookupTable(const int& n) -{ - vtkLookupTable* lut = 0; - switch(n) - { - case LUT_BW: - lut = vtkLookupTableManager::GetBWLookupTable(); - break; - - case LUT_BWINV: - lut = vtkLookupTableManager::GetBWInverseLookupTable(); - break; - - case LUT_SPECTTUM: - lut = vtkLookupTableManager::GetSpectrumLookupTable(); - break; - - case LUT_HOTMETAL: - lut = vtkLookupTableManager::GetHotMetalLookupTable(); - break; - - case LUT_GECOLORS: - lut = vtkLookupTableManager::GetGEColorLookupTable(); - break; - - case LUT_FLOW: - lut = vtkLookupTableManager::GetFlowLookupTable(); - break; - - case LUT_LONI: - lut = vtkLookupTableManager::GetLONILookupTable(); - break; - - case LUT_LONI2: - lut = vtkLookupTableManager::GetLONI2LookupTable(); - break; - - case LUT_ASYMETRY: - lut = vtkLookupTableManager::GetAsymmetryLookupTable(); - break; - - case LUT_PVALUE: - lut = vtkLookupTableManager::GetPValueLookupTable(); - break; - - case LUT_ROI: - lut = vtkLookupTableManager::GetROILookupTable(); - break; - - default: - break; - } - - return lut; -} - - -vtkLookupTable* vtkLookupTableManager::GetBWLookupTable() -{ - vtkLookupTable* bwLut = vtkLookupTable::New(); - bwLut->SetTableRange (0, 1); - bwLut->SetSaturationRange (0, 0); - bwLut->SetHueRange (0, 0); - bwLut->SetValueRange (0, 1); - bwLut->Build(); - - return bwLut; -} - - -vtkLookupTable* vtkLookupTableManager::GetBWInverseLookupTable() -{ - vtkLookupTable* bwLut = vtkLookupTable::New(); - bwLut->SetTableRange (0, 1); - bwLut->SetSaturationRange (0, 0); - bwLut->SetHueRange (0, 0); - bwLut->SetValueRange (1, 0); - bwLut->Build(); - - return bwLut; -} - - - -vtkLookupTable* vtkLookupTableManager::GetSpectrumLookupTable() -{ - vtkLookupTable* lut = vtkLookupTable::New(); - lut->SetNumberOfTableValues(256); - lut->Build(); - - for( int i=0; i<256; i++) - { - lut->SetTableValue(i, (double)Spectrum[i]/255.0, (double)Spectrum[256+i]/255.0, (double)Spectrum[256*2+i]/255.0, 1.0); - } - - return lut; -} - - -vtkLookupTable* vtkLookupTableManager::GetHotMetalLookupTable() -{ - vtkLookupTable* lut = vtkLookupTable::New(); - lut->SetNumberOfTableValues(256); - lut->Build(); - - for( int i=0; i<256; i++) - { - lut->SetTableValue(i, (double)HotMetal[i]/255.0, (double)HotMetal[256+i]/255.0, (double)HotMetal[256*2+i]/255.0, 1.0); - } - - return lut; -} - - -vtkLookupTable* vtkLookupTableManager::GetGEColorLookupTable() -{ - vtkLookupTable* lut = vtkLookupTable::New(); - lut->SetNumberOfTableValues(256); - lut->Build(); - - for( int i=0; i<256; i++) - { - lut->SetTableValue(i, (double)GEColor[i]/255.0, (double)GEColor[256+i]/255.0, (double)GEColor[256*2+i]/255.0, 1.0); - } - - return lut; -} - - -vtkLookupTable* vtkLookupTableManager::GetFlowLookupTable() -{ - vtkLookupTable* lut = vtkLookupTable::New(); - lut->SetNumberOfTableValues(256); - lut->Build(); - - for( int i=0; i<256; i++) - { - lut->SetTableValue(i, (double)Flow[i]/255.0, (double)Flow[256+i]/255.0, (double)Flow[256*2+i]/255.0, 1.0); - } - - return lut; -} - - -vtkLookupTable* vtkLookupTableManager::GetLONILookupTable() -{ - vtkLookupTable* lut = vtkLookupTable::New(); - lut->SetNumberOfTableValues(203); - lut->Build(); - - for( int i=0; i<203; i++) - { - lut->SetTableValue(i, (double)LONI[i][0], (double)LONI[i][1], (double)LONI[i][2], 1.0); - } - - return lut; -} - - -vtkLookupTable* vtkLookupTableManager::GetLONI2LookupTable() -{ - vtkLookupTable* lut = vtkLookupTable::New(); - lut->SetNumberOfTableValues(120); - lut->Build(); - - for( int i=0; i<120; i++) - { - lut->SetTableValue(i, (double)LONI2[i][0], (double)LONI2[i][1], (double)LONI2[i][2], 1.0); - } - - return lut; -} - - -vtkLookupTable* vtkLookupTableManager::GetAsymmetryLookupTable() -{ - vtkLookupTable* lut = vtkLookupTable::New(); - lut->SetNumberOfTableValues(256); - lut->Build(); - - for( int i=0; i<256; i++) - { - lut->SetTableValue(i, (double)AsymmetryLUT[i][0], (double)AsymmetryLUT[i][1], (double)AsymmetryLUT[i][2], 1.0); - } - - return lut; -} - - -vtkLookupTable* vtkLookupTableManager::GetPValueLookupTable() -{ - vtkLookupTable* lut = vtkLookupTable::New(); - lut->SetTableRange (0, 1); - lut->SetSaturationRange (1.0, 1.5); - lut->SetHueRange (0.666, 0.8333); - //lut->SetHueRange (0.666, 0.0); - lut->SetValueRange (0.5, 1.0); - lut->Build(); - - return lut; -} - - -vtkLookupTable* vtkLookupTableManager::GetROILookupTable() -{ - vtkLookupTable* lut = vtkLookupTable::New(); - lut->SetNumberOfTableValues (256); - lut->SetTableValue (0, 0.0, 0.0, 0.0, 0.0); // erase color - - lut->SetTableValue (1, 1.0, 0.0, 0.0, 0.5); - lut->SetTableValue (2, 0.0, 1.0, 0.0, 0.5); - lut->SetTableValue (3, 0.0, 0.0, 1.0, 0.5); - lut->SetTableValue (4, 1.0, 1.0, 0.0, 0.5); - lut->SetTableValue (5, 0.0, 1.0, 1.0, 0.5); - lut->SetTableValue (6, 1.0, 0.0, 1.0, 0.5); - - lut->SetTableValue (7, 1.0, 0.5, 0.0, 0.5); - lut->SetTableValue (8, 0.0, 1.0, 0.5, 0.5); - lut->SetTableValue (9, 0.5, 0.0, 1.0, 0.5); - lut->SetTableValue (10, 1.0, 1.0, 0.5, 0.5); - lut->SetTableValue (11, 0.5, 1.0, 1.0, 0.5); - lut->SetTableValue (12, 1.0, 0.5, 1.0, 0.5); - - - - // Fill the rest of the labels with color ramps, code taken from SNAP -// for (int i = 13; i < 256; i++) -// { -// if (i < 85) -// { -// lut->SetTableValue (i, ((84.0-i)/85.0 * 200.0 + 50.0)/255.0, (i/85.0 * 200.0 + 50.0)/255.0, 0, 0.5); -// } -// else if (i < 170) -// { -// lut->SetTableValue (i, 0, ((169.0-i)/85.0 * 200.0 + 50)/255.0, ((i-85)/85.0 * 200.0 + 50)/255.0, 0.5); -// } -// else -// { -// lut->SetTableValue (i, ((i-170)/85.0 * 200.0 + 50)/255.0, 0.0, ((255.0-i)/85.0 * 200.0 + 50)/255.0, 0.5); -// } -// } - - - // Fill the rest with random colors - -// for (int i = 13; i < 256; i++) -// { -// srand (clock()); - -// // put a random color -// int i1 = 1 + (int) (100.0 * ((double)rand() / (RAND_MAX + 1.0))); -// int i2 = 1 + (int) (100.0 * ((double)rand() / (RAND_MAX + 1.0))); -// int i3 = 1 + (int) (100.0 * ((double)rand() / (RAND_MAX + 1.0))); -// double rand_1 = (double)(i1)/(100.0); -// double rand_2 = (double)(i2)/(100.0); -// double rand_3 = (double)(i3)/(100.0); -// double r = rand_1, g = rand_2, b = rand_3; -// if (i1 < 33) -// r = 1; -// else if (i1 < 66) -// g = 1; -// else if (i1 < 100) -// b = 1; - -// lut->SetTableValue (i, r, g, b, 0.5); -// } - - for (int i = 12; i < 256; i++) - { - if (i%12 == 0) - lut->SetTableValue (i, 1.0, 0.0, 0.0, 0.5); - else if (i%12 == 1) - lut->SetTableValue (i, 0.0, 1.0, 0.0, 0.5); - else if (i%12 == 2) - lut->SetTableValue (i, 0.0, 0.0, 1.0, 0.5); - else if (i%12 == 3) - lut->SetTableValue (i, 1.0, 1.0, 0.0, 0.5); - else if (i%12 == 4) - lut->SetTableValue (i, 0.0, 1.0, 1.0, 0.5); - else if (i%12 == 5) - lut->SetTableValue (i, 1.0, 0.0, 1.0, 0.5); - else if (i%12 == 6) - lut->SetTableValue (i, 1.0, 0.5, 0.0, 0.5); - else if (i%12 == 7) - lut->SetTableValue (i, 0.0, 1.0, 0.5, 0.5); - else if (i%12 == 8) - lut->SetTableValue (i, 0.5, 0.0, 1.0, 0.5); - else if (i%12 == 9) - lut->SetTableValue (i, 1.0, 1.0, 0.5, 0.5); - else if (i%12 == 10) - lut->SetTableValue (i, 0.5, 1.0, 1.0, 0.5); - else if (i%12 == 11) - lut->SetTableValue (i, 1.0, 0.5, 1.0, 0.5); - } - - return lut; - -} diff --git a/branches/ColorViewer/ExternalCode/MegaVTK/vtkRenderingAddOn/vtkLookupTableManager.h b/branches/ColorViewer/ExternalCode/MegaVTK/vtkRenderingAddOn/vtkLookupTableManager.h deleted file mode 100644 index b245032a..00000000 --- a/branches/ColorViewer/ExternalCode/MegaVTK/vtkRenderingAddOn/vtkLookupTableManager.h +++ /dev/null @@ -1,158 +0,0 @@ -/*========================================================================= - -Program: vtkINRIA3D -Module: $Id: vtkLookupTableManager.h 700 2008-02-22 16:19:25Z filus $ -Language: C++ -Author: $Author: filus $ -Date: $Date: 2008-02-22 11:19:25 -0500 (Fri, 22 Feb 2008) $ -Version: $Revision: 700 $ - -Copyright (c) 2007 INRIA - Asclepios Project. All rights reserved. - -This software is distributed WITHOUT ANY WARRANTY; without even -the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR -PURPOSE. See the above copyright notices for more information. - -=========================================================================*/ - -/*======================================================================== - Copyright (c) INRIA - ASCLEPIOS Project (http://www-sop.inria.fr/asclepios). - All rights reserved. - - Redistribution and use in source and binary forms, with or without - modification, are permitted provided that the following conditions are met: - - * Redistributions of source code must retain the above copyright notice, - this list of conditions and the following disclaimer. - - * Redistributions in binary form must reproduce the above copyright notice, - this list of conditions and the following disclaimer in the documentation - and/or other materials provided with the distribution. - - * Neither the name of INRIA or ASCLEPIOS, nor the names of any contributors - may be used to endorse or promote products derived from this software - without specific prior written permission. - - * Modified source versions must be plainly marked as such, and must not be - misrepresented as being the original software. - - THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDER AND CONTRIBUTORS ``AS IS'' - AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE - IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE - ARE DISCLAIMED. IN NO EVENT SHALL THE AUTHORS OR CONTRIBUTORS BE LIABLE FOR - ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL - DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR - SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER - CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, - OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE - OF THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE. - =========================================================================*/ - -/*========================================================================= - Modifications were made by the GoFigure Dev. Team. - while at Megason Lab, Systems biology, Harvard Medical school, 2009 - - Copyright (c) 2009, President and Fellows of Harvard College. - All rights reserved. - - Redistribution and use in source and binary forms, with or without - modification, are permitted provided that the following conditions are met: - - Redistributions of source code must retain the above copyright notice, - this list of conditions and the following disclaimer. - Redistributions in binary form must reproduce the above copyright notice, - this list of conditions and the following disclaimer in the documentation - and/or other materials provided with the distribution. - Neither the name of the President and Fellows of Harvard College - nor the names of its contributors may be used to endorse or promote - products derived from this software without specific prior written - permission. - - THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS - "AS IS" AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, - THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR - PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT OWNER OR CONTRIBUTORS - BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, - OR CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT - OF SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR PROFITS; - OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, - WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE - OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF - ADVISED OF THE POSSIBILITY OF SUCH DAMAGE. - - =========================================================================*/ - - -#ifndef _vtk_LookupTableManager_h_ -#define _vtk_LookupTableManager_h_ - -#include - -#include -#include - -class vtkLookupTableManager: public vtkObject -{ - - public: - - //BTX - enum LookupTableIds - { - LUT_BW = 0, - LUT_BWINV, - LUT_SPECTTUM, - LUT_HOTMETAL, - LUT_GECOLORS, - LUT_FLOW, - LUT_LONI, - LUT_LONI2, - LUT_ASYMETRY, - LUT_PVALUE, - LUT_ROI - }; - //ETX - - static vtkLookupTableManager* New(); - vtkTypeRevisionMacro (vtkLookupTableManager, vtkObject); - - static vtkLookupTable* GetBWLookupTable (void); - - static vtkLookupTable* GetBWInverseLookupTable (void); - - static vtkLookupTable* GetSpectrumLookupTable (void); - - static vtkLookupTable* GetHotMetalLookupTable (void); - - static vtkLookupTable* GetGEColorLookupTable (void); - - static vtkLookupTable* GetFlowLookupTable (void); - - static vtkLookupTable* GetLONILookupTable (void); - - static vtkLookupTable* GetLONI2LookupTable (void); - - static vtkLookupTable* GetAsymmetryLookupTable (void); - - static vtkLookupTable* GetPValueLookupTable (void); - - static std::vector GetAvailableLookupTables(void); - - static vtkLookupTable* GetROILookupTable (void); - - static vtkLookupTable* GetLookupTable(const int&); - - protected: - vtkLookupTableManager(); - ~vtkLookupTableManager(); - - - - private: - - -}; - - - -#endif diff --git a/branches/ColorViewer/ExternalCode/MegaVTK/vtkRenderingAddOn/vtkOrientationAnnotation.cxx b/branches/ColorViewer/ExternalCode/MegaVTK/vtkRenderingAddOn/vtkOrientationAnnotation.cxx deleted file mode 100755 index 27c6fd23..00000000 --- a/branches/ColorViewer/ExternalCode/MegaVTK/vtkRenderingAddOn/vtkOrientationAnnotation.cxx +++ /dev/null @@ -1,115 +0,0 @@ -/*======================================================================== - Copyright (c) INRIA - ASCLEPIOS Project (http://www-sop.inria.fr/asclepios). - All rights reserved. - - Redistribution and use in source and binary forms, with or without - modification, are permitted provided that the following conditions are met: - - * Redistributions of source code must retain the above copyright notice, - this list of conditions and the following disclaimer. - - * Redistributions in binary form must reproduce the above copyright notice, - this list of conditions and the following disclaimer in the documentation - and/or other materials provided with the distribution. - - * Neither the name of INRIA or ASCLEPIOS, nor the names of any contributors - may be used to endorse or promote products derived from this software - without specific prior written permission. - - * Modified source versions must be plainly marked as such, and must not be - misrepresented as being the original software. - - THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDER AND CONTRIBUTORS ``AS IS'' - AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE - IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE - ARE DISCLAIMED. IN NO EVENT SHALL THE AUTHORS OR CONTRIBUTORS BE LIABLE FOR - ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL - DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR - SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER - CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, - OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE - OF THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE. - =========================================================================*/ - -/*========================================================================= - Modifications were made by the GoFigure Dev. Team. - while at Megason Lab, Systems biology, Harvard Medical school, 2009 - - Copyright (c) 2009, President and Fellows of Harvard College. - All rights reserved. - - Redistribution and use in source and binary forms, with or without - modification, are permitted provided that the following conditions are met: - - Redistributions of source code must retain the above copyright notice, - this list of conditions and the following disclaimer. - Redistributions in binary form must reproduce the above copyright notice, - this list of conditions and the following disclaimer in the documentation - and/or other materials provided with the distribution. - Neither the name of the President and Fellows of Harvard College - nor the names of its contributors may be used to endorse or promote - products derived from this software without specific prior written - permission. - - THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS - "AS IS" AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, - THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR - PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT OWNER OR CONTRIBUTORS - BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, - OR CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT - OF SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR PROFITS; - OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, - WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE - OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF - ADVISED OF THE POSSIBILITY OF SUCH DAMAGE. - - =========================================================================*/ - -#include "vtkOrientationAnnotation.h" -#include "vtkObjectFactory.h" -#include "vtkTextProperty.h" -#include "vtkTextMapper.h" - -//---------------------------------------------------------------------------- -vtkStandardNewMacro(vtkOrientationAnnotation); -vtkCxxRevisionMacro(vtkOrientationAnnotation, "$Revision: 1043 $"); - -//---------------------------------------------------------------------------- -vtkOrientationAnnotation::vtkOrientationAnnotation() -{ -} - -//---------------------------------------------------------------------------- -vtkOrientationAnnotation::~vtkOrientationAnnotation() -{ -} - - -//---------------------------------------------------------------------------- -void vtkOrientationAnnotation::SetTextActorsPosition(int vsize[2]) -{ - this->TextActor[2]->SetPosition(5, vsize[1]/2); - this->TextActor[3]->SetPosition(vsize[0]/2, 5); - this->TextActor[0]->SetPosition(vsize[0]-5, vsize[1]/2); - this->TextActor[1]->SetPosition(vsize[0]/2, vsize[1]-5); -} - -//---------------------------------------------------------------------------- -void vtkOrientationAnnotation::SetTextActorsJustification() -{ - vtkTextProperty *tprop = this->TextMapper[2]->GetTextProperty(); - tprop->SetJustificationToLeft(); - tprop->SetVerticalJustificationToCentered(); - - tprop = this->TextMapper[3]->GetTextProperty(); - tprop->SetJustificationToCentered(); - tprop->SetVerticalJustificationToBottom(); - - tprop = this->TextMapper[0]->GetTextProperty(); - tprop->SetJustificationToRight(); - tprop->SetVerticalJustificationToCentered(); - - tprop = this->TextMapper[1]->GetTextProperty(); - tprop->SetJustificationToCentered(); - tprop->SetVerticalJustificationToTop(); -} diff --git a/branches/ColorViewer/ExternalCode/MegaVTK/vtkRenderingAddOn/vtkOrientationAnnotation.h b/branches/ColorViewer/ExternalCode/MegaVTK/vtkRenderingAddOn/vtkOrientationAnnotation.h deleted file mode 100755 index 9080bf84..00000000 --- a/branches/ColorViewer/ExternalCode/MegaVTK/vtkRenderingAddOn/vtkOrientationAnnotation.h +++ /dev/null @@ -1,110 +0,0 @@ -/*======================================================================== - Copyright (c) INRIA - ASCLEPIOS Project (http://www-sop.inria.fr/asclepios). - All rights reserved. - - Redistribution and use in source and binary forms, with or without - modification, are permitted provided that the following conditions are met: - - * Redistributions of source code must retain the above copyright notice, - this list of conditions and the following disclaimer. - - * Redistributions in binary form must reproduce the above copyright notice, - this list of conditions and the following disclaimer in the documentation - and/or other materials provided with the distribution. - - * Neither the name of INRIA or ASCLEPIOS, nor the names of any contributors - may be used to endorse or promote products derived from this software - without specific prior written permission. - - * Modified source versions must be plainly marked as such, and must not be - misrepresented as being the original software. - - THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDER AND CONTRIBUTORS ``AS IS'' - AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE - IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE - ARE DISCLAIMED. IN NO EVENT SHALL THE AUTHORS OR CONTRIBUTORS BE LIABLE FOR - ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL - DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR - SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER - CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, - OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE - OF THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE. - =========================================================================*/ - -/*========================================================================= - Modifications were made by the GoFigure Dev. Team. - while at Megason Lab, Systems biology, Harvard Medical school, 2009 - - Copyright (c) 2009, President and Fellows of Harvard College. - All rights reserved. - - Redistribution and use in source and binary forms, with or without - modification, are permitted provided that the following conditions are met: - - Redistributions of source code must retain the above copyright notice, - this list of conditions and the following disclaimer. - Redistributions in binary form must reproduce the above copyright notice, - this list of conditions and the following disclaimer in the documentation - and/or other materials provided with the distribution. - Neither the name of the President and Fellows of Harvard College - nor the names of its contributors may be used to endorse or promote - products derived from this software without specific prior written - permission. - - THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS - "AS IS" AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, - THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR - PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT OWNER OR CONTRIBUTORS - BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, - OR CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT - OF SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR PROFITS; - OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, - WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE - OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF - ADVISED OF THE POSSIBILITY OF SUCH DAMAGE. - - =========================================================================*/ - -// .NAME vtkOrientationAnnotation - text annotation in four corners -// .SECTION Description -// This is an annotation object that manages four text actors / mappers -// to provide annotation in the four corners of a viewport -// -// .SECTION See Also -// vtkActor2D vtkTextMapper - -#ifndef __vtkOrientationAnnotation_h -#define __vtkOrientationAnnotation_h - -#include "vtkCornerAnnotation.h" - -class vtkOrientationAnnotation : - public vtkCornerAnnotation -{ -public: - vtkTypeRevisionMacro(vtkOrientationAnnotation,vtkCornerAnnotation); - - // Description: - // Instantiate object with a rectangle in normaled view coordinates - // of (0.2,0.85, 0.8, 0.95). - static vtkOrientationAnnotation *New(); - -protected: - vtkOrientationAnnotation(); - ~vtkOrientationAnnotation(); - - // Description: - // Set text actor positions given a viewport size and justification - virtual void SetTextActorsPosition(int vsize[2]); - virtual void SetTextActorsJustification(); - -private: - vtkOrientationAnnotation(const vtkOrientationAnnotation&); // Not implemented. - void operator=(const vtkOrientationAnnotation&); // Not implemented. -}; - - -#endif - - - diff --git a/branches/ColorViewer/ExternalCode/MegaVTK/vtkRenderingAddOn/vtkOrientedBoxWidget.cxx b/branches/ColorViewer/ExternalCode/MegaVTK/vtkRenderingAddOn/vtkOrientedBoxWidget.cxx deleted file mode 100644 index 6b5f55d5..00000000 --- a/branches/ColorViewer/ExternalCode/MegaVTK/vtkRenderingAddOn/vtkOrientedBoxWidget.cxx +++ /dev/null @@ -1,243 +0,0 @@ -/*======================================================================== - Copyright (c) INRIA - ASCLEPIOS Project (http://www-sop.inria.fr/asclepios). - All rights reserved. - - Redistribution and use in source and binary forms, with or without - modification, are permitted provided that the following conditions are met: - - * Redistributions of source code must retain the above copyright notice, - this list of conditions and the following disclaimer. - - * Redistributions in binary form must reproduce the above copyright notice, - this list of conditions and the following disclaimer in the documentation - and/or other materials provided with the distribution. - - * Neither the name of INRIA or ASCLEPIOS, nor the names of any contributors - may be used to endorse or promote products derived from this software - without specific prior written permission. - - * Modified source versions must be plainly marked as such, and must not be - misrepresented as being the original software. - - THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDER AND CONTRIBUTORS ``AS IS'' - AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE - IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE - ARE DISCLAIMED. IN NO EVENT SHALL THE AUTHORS OR CONTRIBUTORS BE LIABLE FOR - ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL - DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR - SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER - CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, - OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE - OF THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE. - =========================================================================*/ - -/*========================================================================= - Modifications were made by the GoFigure Dev. Team. - while at Megason Lab, Systems biology, Harvard Medical school, 2009 - - Copyright (c) 2009, President and Fellows of Harvard College. - All rights reserved. - - Redistribution and use in source and binary forms, with or without - modification, are permitted provided that the following conditions are met: - - Redistributions of source code must retain the above copyright notice, - this list of conditions and the following disclaimer. - Redistributions in binary form must reproduce the above copyright notice, - this list of conditions and the following disclaimer in the documentation - and/or other materials provided with the distribution. - Neither the name of the President and Fellows of Harvard College - nor the names of its contributors may be used to endorse or promote - products derived from this software without specific prior written - permission. - - THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS - "AS IS" AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, - THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR - PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT OWNER OR CONTRIBUTORS - BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, - OR CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT - OF SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR PROFITS; - OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, - WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE - OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF - ADVISED OF THE POSSIBILITY OF SUCH DAMAGE. - - =========================================================================*/ - -#include "vtkOrientedBoxWidget.h" -#include "vtkMatrixToLinearTransform.h" -#include "vtkObjectFactory.h" -#include "vtkMatrix4x4.h" -#include "vtkPoints.h" -#include "vtkActor.h" -#include "vtkAssemblyNode.h" -#include "vtkAssemblyPath.h" -#include "vtkCallbackCommand.h" -#include "vtkCamera.h" -#include "vtkCellArray.h" -#include "vtkCellPicker.h" -#include "vtkDoubleArray.h" -#include "vtkFloatArray.h" -#include "vtkMath.h" -#include "vtkObjectFactory.h" -#include "vtkPlanes.h" -#include "vtkPolyData.h" -#include "vtkPolyDataMapper.h" -#include "vtkProperty.h" -#include "vtkRenderWindowInteractor.h" -#include "vtkRenderer.h" -#include "vtkSphereSource.h" -#include "vtkTransform.h" - -vtkCxxRevisionMacro(vtkOrientedBoxWidget, "$Revision: 2 $"); -vtkStandardNewMacro(vtkOrientedBoxWidget); - - -//---------------------------------------------------------------------------- -vtkOrientedBoxWidget::vtkOrientedBoxWidget() -{ - this->OrientationMatrix = vtkMatrix4x4::New(); - this->OrientationMatrix->Identity(); - - this->InvertedOrientationMatrix = vtkMatrix4x4::New(); - this->InvertedOrientationMatrix->Identity(); -} - -//---------------------------------------------------------------------------- -vtkOrientedBoxWidget::~vtkOrientedBoxWidget() -{ - this->OrientationMatrix->Delete(); - this->InvertedOrientationMatrix->Delete(); -} - - -//---------------------------------------------------------------------------- -void vtkOrientedBoxWidget::SetOrientationMatrix(vtkMatrix4x4* matrix) -{ - if (matrix == this->OrientationMatrix) - return; - - if (this->OrientationMatrix) - { - this->OrientationMatrix->UnRegister (this); - this->OrientationMatrix = NULL; - } - - this->OrientationMatrix = matrix; - - if (this->OrientationMatrix) - { - - // move all the actors according to the user-matrix - this->HexActor->SetUserMatrix (matrix); - this->HexFace->SetUserMatrix (matrix); - this->HexOutline->SetUserMatrix (matrix); - - for (unsigned int i=0; i<7; i++) - this->Handle[i]->SetUserMatrix (matrix); - - // initialize inverse matrix - vtkMatrix4x4::Invert (this->OrientationMatrix, this->InvertedOrientationMatrix); - } - -} - - - -//---------------------------------------------------------------------------- -void vtkOrientedBoxWidget::OnMouseMove() -{ - // See whether we're active - if ( this->State == vtkBoxWidget::Outside || - this->State == vtkBoxWidget::Start ) - { - return; - } - - int X = this->Interactor->GetEventPosition()[0]; - int Y = this->Interactor->GetEventPosition()[1]; - - // Do different things depending on state - // Calculations everybody does - double focalPoint[4], pickPoint[4], prevPickPoint[4]; - double z, vpn[3]; - - vtkCamera *camera = this->CurrentRenderer->GetActiveCamera(); - if ( !camera ) - { - return; - } - - // Compute the two points defining the motion vector - this->ComputeWorldToDisplay(this->LastPickPosition[0], - this->LastPickPosition[1], - this->LastPickPosition[2], focalPoint); - z = focalPoint[2]; - this->ComputeDisplayToWorld( - static_cast(this->Interactor->GetLastEventPosition()[0]), - static_cast(this->Interactor->GetLastEventPosition()[1]), - z, prevPickPoint); - this->ComputeDisplayToWorld( static_cast(X), static_cast(Y), - z, pickPoint); - - // multiply pick points by the inverted orientation matrix - // to recover the true movement to apply - this->InvertedOrientationMatrix->MultiplyPoint (prevPickPoint, prevPickPoint); - this->InvertedOrientationMatrix->MultiplyPoint (pickPoint, pickPoint); - - // Process the motion - if ( this->State == vtkBoxWidget::Moving ) - { - // Okay to process - if ( this->CurrentHandle ) - { - if ( this->RotationEnabled && this->CurrentHandle == this->HexFace ) - { - camera->GetViewPlaneNormal(vpn); - this->Rotate(X, Y, prevPickPoint, pickPoint, vpn); - } - else if ( this->TranslationEnabled && - this->CurrentHandle == this->Handle[6] ) - { - this->Translate(prevPickPoint, pickPoint); - } - else if ( this->TranslationEnabled && this->ScalingEnabled ) - { - if ( this->CurrentHandle == this->Handle[0] ) - { - this->MoveMinusXFace(prevPickPoint, pickPoint); - } - else if ( this->CurrentHandle == this->Handle[1] ) - { - this->MovePlusXFace(prevPickPoint, pickPoint); - } - else if ( this->CurrentHandle == this->Handle[2] ) - { - this->MoveMinusYFace(prevPickPoint, pickPoint); - } - else if ( this->CurrentHandle == this->Handle[3] ) - { - this->MovePlusYFace(prevPickPoint, pickPoint); - } - else if ( this->CurrentHandle == this->Handle[4] ) - { - this->MoveMinusZFace(prevPickPoint, pickPoint); - } - else if ( this->CurrentHandle == this->Handle[5] ) - { - this->MovePlusZFace(prevPickPoint, pickPoint); - } - } - } - } - else if ( this->ScalingEnabled && this->State == vtkBoxWidget::Scaling ) - { - this->Scale(prevPickPoint, pickPoint, X, Y); - } - - // Interact, if desired - this->EventCallbackCommand->SetAbortFlag(1); - this->InvokeEvent(vtkCommand::InteractionEvent, NULL); - this->Interactor->Render(); -} diff --git a/branches/ColorViewer/ExternalCode/MegaVTK/vtkRenderingAddOn/vtkOrientedBoxWidget.h b/branches/ColorViewer/ExternalCode/MegaVTK/vtkRenderingAddOn/vtkOrientedBoxWidget.h deleted file mode 100644 index 5ad032c6..00000000 --- a/branches/ColorViewer/ExternalCode/MegaVTK/vtkRenderingAddOn/vtkOrientedBoxWidget.h +++ /dev/null @@ -1,113 +0,0 @@ -/*======================================================================== - Copyright (c) INRIA - ASCLEPIOS Project (http://www-sop.inria.fr/asclepios). - All rights reserved. - - Redistribution and use in source and binary forms, with or without - modification, are permitted provided that the following conditions are met: - - * Redistributions of source code must retain the above copyright notice, - this list of conditions and the following disclaimer. - - * Redistributions in binary form must reproduce the above copyright notice, - this list of conditions and the following disclaimer in the documentation - and/or other materials provided with the distribution. - - * Neither the name of INRIA or ASCLEPIOS, nor the names of any contributors - may be used to endorse or promote products derived from this software - without specific prior written permission. - - * Modified source versions must be plainly marked as such, and must not be - misrepresented as being the original software. - - THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDER AND CONTRIBUTORS ``AS IS'' - AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE - IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE - ARE DISCLAIMED. IN NO EVENT SHALL THE AUTHORS OR CONTRIBUTORS BE LIABLE FOR - ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL - DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR - SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER - CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, - OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE - OF THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE. - =========================================================================*/ - -/*========================================================================= - Modifications were made by the GoFigure Dev. Team. - while at Megason Lab, Systems biology, Harvard Medical school, 2009 - - Copyright (c) 2009, President and Fellows of Harvard College. - All rights reserved. - - Redistribution and use in source and binary forms, with or without - modification, are permitted provided that the following conditions are met: - - Redistributions of source code must retain the above copyright notice, - this list of conditions and the following disclaimer. - Redistributions in binary form must reproduce the above copyright notice, - this list of conditions and the following disclaimer in the documentation - and/or other materials provided with the distribution. - Neither the name of the President and Fellows of Harvard College - nor the names of its contributors may be used to endorse or promote - products derived from this software without specific prior written - permission. - - THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS - "AS IS" AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, - THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR - PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT OWNER OR CONTRIBUTORS - BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, - OR CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT - OF SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR PROFITS; - OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, - WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE - OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF - ADVISED OF THE POSSIBILITY OF SUCH DAMAGE. - - =========================================================================*/ - -#ifndef _vtkOrientedBoxWidget_h_ -#define _vtkOrientedBoxWidget_h_ - -#include "vtkBoxWidget.h" - -class vtkMatrix4x4; - -/** - \author Nicolas Toussaint - \class vtkOrientedBoxWidget - \brief orthogonal hexahedron 3D widget with pre-defined orientation - - Description - - This 3D widget defines a region of interest. By default it behaves exactly as - the vtkBoxWidget class does. But if the user set the Orientation matrix - with SetOrientationMatrix() then all the actors of the widgets (handles, - hexahedron, etc) will be oriented according to the argument. - - \see vtk3DWidget vtkBoxWidget - */ -class vtkOrientedBoxWidget : public vtkBoxWidget -{ - - public: - - static vtkOrientedBoxWidget* New(); - vtkTypeRevisionMacro(vtkOrientedBoxWidget, vtkBoxWidget); - - vtkGetObjectMacro (OrientationMatrix, vtkMatrix4x4); - virtual void SetOrientationMatrix (vtkMatrix4x4* matrix); - - protected: - - vtkOrientedBoxWidget(); - ~vtkOrientedBoxWidget(); - - virtual void OnMouseMove(); - - vtkMatrix4x4* OrientationMatrix; - vtkMatrix4x4* InvertedOrientationMatrix; - - -}; - -#endif /* _vtkOrientedBoxWidget_h_ */ diff --git a/branches/ColorViewer/ExternalCode/MegaVTK/vtkRenderingAddOn/vtkViewColorImage.cxx b/branches/ColorViewer/ExternalCode/MegaVTK/vtkRenderingAddOn/vtkViewColorImage.cxx deleted file mode 100644 index c836ced9..00000000 --- a/branches/ColorViewer/ExternalCode/MegaVTK/vtkRenderingAddOn/vtkViewColorImage.cxx +++ /dev/null @@ -1,320 +0,0 @@ -/*======================================================================== - Copyright (c) INRIA - ASCLEPIOS Project (http://www-sop.inria.fr/asclepios). - All rights reserved. - - Redistribution and use in source and binary forms, with or without - modification, are permitted provided that the following conditions are met: - - * Redistributions of source code must retain the above copyright notice, - this list of conditions and the following disclaimer. - - * Redistributions in binary form must reproduce the above copyright notice, - this list of conditions and the following disclaimer in the documentation - and/or other materials provided with the distribution. - - * Neither the name of INRIA or ASCLEPIOS, nor the names of any contributors - may be used to endorse or promote products derived from this software - without specific prior written permission. - - * Modified source versions must be plainly marked as such, and must not be - misrepresented as being the original software. - - THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDER AND CONTRIBUTORS ``AS IS'' - AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE - IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE - ARE DISCLAIMED. IN NO EVENT SHALL THE AUTHORS OR CONTRIBUTORS BE LIABLE FOR - ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL - DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR - SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER - CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, - OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE - OF THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE. - =========================================================================*/ - -/*========================================================================= - Modifications were made by the GoFigure Dev. Team. - while at Megason Lab, Systems biology, Harvard Medical school, 2009 - - Copyright (c) 2009, President and Fellows of Harvard College. - All rights reserved. - - Redistribution and use in source and binary forms, with or without - modification, are permitted provided that the following conditions are met: - - Redistributions of source code must retain the above copyright notice, - this list of conditions and the following disclaimer. - Redistributions in binary form must reproduce the above copyright notice, - this list of conditions and the following disclaimer in the documentation - and/or other materials provided with the distribution. - Neither the name of the President and Fellows of Harvard College - nor the names of its contributors may be used to endorse or promote - products derived from this software without specific prior written - permission. - - THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS - "AS IS" AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, - THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR - PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT OWNER OR CONTRIBUTORS - BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, - OR CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT - OF SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR PROFITS; - OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, - WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE - OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF - ADVISED OF THE POSSIBILITY OF SUCH DAMAGE. - - =========================================================================*/ - -#include "vtkViewColorImage.h" - -#include "vtkCamera.h" -#include "vtkCommand.h" -#include "vtkImageActor.h" -#include "vtkImageData.h" -#include "vtkInteractorStyleImage.h" -#include "vtkObjectFactory.h" -#include "vtkRenderWindow.h" -#include "vtkRenderWindowInteractor.h" -#include "vtkRenderer.h" -#include "vtkMatrix4x4.h" -#include "vtkOrientationAnnotation.h" -#include "vtkCornerAnnotation.h" -#include "vtkTextProperty.h" -#include "vtkMath.h" -#include "vtkPlane.h" -#include "vtkCutter.h" -#include "vtkActor.h" -#include "vtkPolyDataMapper.h" -#include "vtkProp3DCollection.h" -#include "vtkDataSetCollection.h" -#include "vtkPoints.h" -#include "vtkIdList.h" -#include "vtkOutlineSource.h" -#include "vtkMatrixToLinearTransform.h" -#include "vtkPointData.h" -#include "vtkUnsignedCharArray.h" -#include "vtkIntArray.h" -#include "vtkImageAccumulate.h" -#include "vtkInteractorStyleImage.h" - -#include -#include - -vtkCxxRevisionMacro(vtkViewColorImage, "$Revision: 2 $"); -vtkStandardNewMacro(vtkViewColorImage); - -//---------------------------------------------------------------------------- -vtkViewColorImage::vtkViewColorImage() -{ - this->OrientationMatrix = vtkMatrix4x4::New(); - this->OrientationAnnotation = vtkOrientationAnnotation::New(); - this->CornerAnnotation = vtkCornerAnnotation::New(); - this->TextProperty = vtkTextProperty::New(); - this->Prop3DCollection = vtkProp3DCollection::New(); - this->DataSetCollection = vtkDataSetCollection::New(); - this->OrientationTransform = vtkMatrixToLinearTransform::New(); - - this->OrientationMatrix->Identity(); - this->CornerAnnotation->SetNonlinearFontScaleFactor (0.22); - this->CornerAnnotation->SetTextProperty ( this->TextProperty ); - this->OrientationAnnotation->SetNonlinearFontScaleFactor (0.25); - this->OrientationAnnotation->SetTextProperty ( this->TextProperty ); - - this->ShowAnnotations = true; - - this->OrientationTransform->SetInput (this->OrientationMatrix); - - this->Renderer->AddViewProp ( this->CornerAnnotation ); - this->Renderer->AddViewProp ( this->OrientationAnnotation ); -} - -//---------------------------------------------------------------------------- -vtkViewColorImage::~vtkViewColorImage() -{ - this->OrientationMatrix->Delete(); - this->OrientationAnnotation->Delete(); - this->CornerAnnotation->Delete(); - this->Prop3DCollection->Delete(); - this->DataSetCollection->Delete(); - this->OrientationTransform->Delete(); - this->TextProperty->Delete(); -} - - -//---------------------------------------------------------------------------- -void vtkViewColorImage::SetOrientationMatrix (vtkMatrix4x4* matrix) -{ - vtkSetObjectMacro2Body (OrientationMatrix, vtkMatrix4x4, matrix); - this->ImageActor->SetUserMatrix (this->OrientationMatrix); - this->OrientationTransform->SetInput (this->OrientationMatrix); - - this->UpdateOrientation(); -} - -//---------------------------------------------------------------------------- -void vtkViewColorImage::SetTextProperty (vtkTextProperty* textproperty) -{ - vtkSetObjectMacro2Body (TextProperty, vtkTextProperty, textproperty); - this->CornerAnnotation->SetTextProperty (this->TextProperty); -} - -//---------------------------------------------------------------------------- -double vtkViewColorImage::GetValueAtPosition(double worldcoordinates[3], - int component ) -{ - if (!this->GetInput()) - return 0.0; - - int* indices= this->GetImageCoordinatesFromWorldCoordinates(worldcoordinates); - int* extent = this->GetInput()->GetWholeExtent(); - if ( (indices[0] < extent[0]) || (indices[0] > extent[1]) || - (indices[1] < extent[2]) || (indices[1] > extent[3]) || - (indices[2] < extent[4]) || (indices[2] > extent[5]) ) - return 0; - else - return this->GetInput()->GetScalarComponentAsDouble (indices[0], indices[1], - indices[2], component); -} - - -//---------------------------------------------------------------------------- -bool vtkViewColorImage::RemoveDataSet (vtkDataSet* dataset) -{ - unsigned int index = this->DataSetCollection->IsItemPresent (dataset); - if (!index) - return false; - this->Renderer->RemoveViewProp ( - vtkProp::SafeDownCast (this->Prop3DCollection->GetItemAsObject (index))); - this->DataSetCollection->RemoveItem (index); - this->Prop3DCollection->RemoveItem (index); - - return true; -} - -//---------------------------------------------------------------------------- -double* vtkViewColorImage::GetWorldCoordinatesFromImageCoordinates(int indices[3]) -{ - if (!this->GetInput()) - { - double* nullpos = new double[3]; - nullpos[0] = 0; nullpos[1] = 0; nullpos[2] = 0; - return nullpos; - } - - // Get information - double* spacing = this->GetInput()->GetSpacing(); - double* origin = this->GetInput()->GetOrigin(); - - double unorientedposition[4]; - for (unsigned int i=0; i<3; i++) - unorientedposition[i] = origin[i] + spacing[i]*indices[i]; - unorientedposition[3] = 1; - - // apply orientation matrix - double* position = new double[4]; - this->GetOrientationMatrix()->MultiplyPoint (unorientedposition, position); - return position; -} - -//---------------------------------------------------------------------------- -int* vtkViewColorImage::GetImageCoordinatesFromWorldCoordinates(double position[3]) -{ - if (!this->GetInput()) - { - int* nullpos = new int[3]; - nullpos[0] = 0; nullpos[1] = 0; nullpos[2] = 0; - return nullpos; - } - - // Get information - double unorientedposition[4] = {position[0], position[1], position[2], 1}; - double spacing[4] = {this->GetInput()->GetSpacing()[0], - this->GetInput()->GetSpacing()[1], - this->GetInput()->GetSpacing()[2], - 0}; - double origin[4] = {this->GetInput()->GetOrigin()[0], - this->GetInput()->GetOrigin()[1], - this->GetInput ()->GetOrigin()[2], - 1}; - - // apply inverted orientation matrix to the world-coordinate position - vtkMatrix4x4* inverse = vtkMatrix4x4::New(); - vtkMatrix4x4::Invert (this->GetOrientationMatrix(), inverse); - inverse->MultiplyPoint (unorientedposition, unorientedposition); - - int* indices = new int[3]; - for (unsigned int i=0; i<3;i++) - { - if (fabs (spacing[i]) > 1e-5) - indices[i] = vtkMath::Round((unorientedposition[i]-origin[i])/spacing[i]); - else - indices[i] = 0; - } - inverse->Delete(); - - return indices; -} - -//---------------------------------------------------------------------------- -void vtkViewColorImage::SetBackground(double rgb[3]) -{ - if (this->Renderer) - this->Renderer->SetBackground(rgb); -} -//---------------------------------------------------------------------------- -void vtkViewColorImage::SetBackground(double r, double g, double b) -{ - if (this->Renderer) - this->Renderer->SetBackground(r,g,b); -} - -//---------------------------------------------------------------------------- -double* vtkViewColorImage::GetBackground() -{ - if (this->Renderer) - return this->Renderer->GetBackground(); - return NULL; -} - -//---------------------------------------------------------------------------- -void vtkViewColorImage::ResetCamera (void) -{ - if (this->Renderer) - this->Renderer->ResetCamera(); -} - -//---------------------------------------------------------------------------- -void vtkViewColorImage::Reset (void) -{ - this->ResetCamera(); -} - -//---------------------------------------------------------------------------- -void vtkViewColorImage::Enable (void) -{ - this->Interactor->Enable(); -} -//---------------------------------------------------------------------------- -void vtkViewColorImage::Disable (void) -{ - this->Interactor->Disable(); -} -//---------------------------------------------------------------------------- -int vtkViewColorImage::GetEnabled (void) -{ - return this->Interactor->GetEnabled(); -} - -//---------------------------------------------------------------------------- -void vtkViewColorImage::SetShowAnnotations (int val) -{ - this->ShowAnnotations = val; - this->CornerAnnotation->SetVisibility (val); - this->OrientationAnnotation->SetVisibility (val); -} - -//---------------------------------------------------------------------------- -vtkRenderWindowInteractor* vtkViewColorImage::GetRenderWindowInteractor() -{ - return this->GetRenderWindow()->GetInteractor(); -} diff --git a/branches/ColorViewer/ExternalCode/MegaVTK/vtkRenderingAddOn/vtkViewColorImage.h b/branches/ColorViewer/ExternalCode/MegaVTK/vtkRenderingAddOn/vtkViewColorImage.h deleted file mode 100644 index 6a63188f..00000000 --- a/branches/ColorViewer/ExternalCode/MegaVTK/vtkRenderingAddOn/vtkViewColorImage.h +++ /dev/null @@ -1,295 +0,0 @@ -/*======================================================================== - Copyright (c) INRIA - ASCLEPIOS Project (http://www-sop.inria.fr/asclepios). - All rights reserved. - - Redistribution and use in source and binary forms, with or without - modification, are permitted provided that the following conditions are met: - - * Redistributions of source code must retain the above copyright notice, - this list of conditions and the following disclaimer. - - * Redistributions in binary form must reproduce the above copyright notice, - this list of conditions and the following disclaimer in the documentation - and/or other materials provided with the distribution. - - * Neither the name of INRIA or ASCLEPIOS, nor the names of any contributors - may be used to endorse or promote products derived from this software - without specific prior written permission. - - * Modified source versions must be plainly marked as such, and must not be - misrepresented as being the original software. - - THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDER AND CONTRIBUTORS ``AS IS'' - AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE - IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE - ARE DISCLAIMED. IN NO EVENT SHALL THE AUTHORS OR CONTRIBUTORS BE LIABLE FOR - ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL - DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR - SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER - CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, - OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE - OF THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE. - =========================================================================*/ - -/*========================================================================= - Modifications were made by the GoFigure Dev. Team. - while at Megason Lab, Systems biology, Harvard Medical school, 2009 - - Copyright (c) 2009, President and Fellows of Harvard College. - All rights reserved. - - Redistribution and use in source and binary forms, with or without - modification, are permitted provided that the following conditions are met: - - Redistributions of source code must retain the above copyright notice, - this list of conditions and the following disclaimer. - Redistributions in binary form must reproduce the above copyright notice, - this list of conditions and the following disclaimer in the documentation - and/or other materials provided with the distribution. - Neither the name of the President and Fellows of Harvard College - nor the names of its contributors may be used to endorse or promote - products derived from this software without specific prior written - permission. - - THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS - "AS IS" AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, - THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR - PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT OWNER OR CONTRIBUTORS - BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, - OR CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT - OF SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR PROFITS; - OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, - WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE - OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF - ADVISED OF THE POSSIBILITY OF SUCH DAMAGE. - - =========================================================================*/ - -#ifndef _vtkViewColorImage_h_ -#define _vtkViewColorImage_h_ - -#include "vtkImageViewer2.h" - -/** - This macro can be useful as we frequently set - an instance this way, meaning unregistering previously set instance, - registering given instance, and call a modified event. - However this might be not the best place to define it... -*/ -//BTX -#define vtkSetObjectMacro2Body(object, type, _arg)\ - if (this->object == _arg) \ - return; \ - if (this->object) \ - { \ - this->object->UnRegister(this); \ - } \ - this->object = _arg; \ - \ - if (this->object != NULL) \ - { \ - this->object->Register(this); \ - } \ - \ - this->Modified(); \ -//ETX - -/** - This macro can be useful as we frequently set - an instance this way, meaning unregistering previously set instance, - registering given instance, and call a modified event. - However this might be not the best place to define it... -*/ -//BTX -#define vtkSetObjectMacro2(object, type) \ - virtual void Set##object (type* _arg) \ - { \ - vtkSetObjectMacro2Body (object, type, _arg);\ - } \ - -//ETX - -class vtkMatrix4x4; -class vtkScalarBarActor; -class vtkLookupTable; -class vtkTextProperty; -class vtkCornerAnnotation; -class vtkOrientationAnnotation; -class vtkActor; -class vtkDataSet; -class vtkPolyData; -class vtkProperty; -class vtkProp3DCollection; -class vtkDataSetCollection; -class vtkMatrixToLinearTransform; - -class vtkViewColorImage : public vtkImageViewer2 -{ - - public: - - static vtkViewColorImage* New(); - vtkTypeRevisionMacro(vtkViewColorImage, vtkImageViewer2); - - /** - Get the orientation annotation. This annotation describes the orientation - of the slice plane, according to the rule - Right(R)-Left(L) Anterior(A)-Posterior(P) Inferior(I)-Superior(S) - */ - vtkGetObjectMacro (OrientationAnnotation, vtkOrientationAnnotation); - - - /** - Get the corner annotation. - */ - ///\todo make the corner annotation such that it follows the slice number, the - ///image scalar value at cursor, the spacing, etc - vtkGetObjectMacro (CornerAnnotation, vtkCornerAnnotation); - - - /** - The OrientationMatrix instance (GetOrientationMatrix()) is a very important - added feature of this viewer. It describes the rotation and translation to - apply to the image bouding box (axis aligned) to the world coordinate - system. - - Rotation part is usually given by the GetDirection() method on an - itk::Image for instance. Translation usually correspond to the origin of - the image given by GetOrigin() on an itk::Image. - - CAUTION: if you provide non-zero origin to the viewer vtkImageData input - (SetInput()), then don't provide translation to the OrientationMatrix - instance, otherwise the information is redundant. - - The best behaviour is to force the origin of the vtkImageData input to zero - and provide this origin information in the OrientationMatrix. - - */ - vtkGetObjectMacro (OrientationMatrix, vtkMatrix4x4); - virtual void SetOrientationMatrix (vtkMatrix4x4* matrix); - - - /** - The TextProperty instance (GetTextProperty()) describes the font and - other settings of the CornerAnnotation instance (GetCornerAnnotation()) - */ - vtkGetObjectMacro (TextProperty, vtkTextProperty); - virtual void SetTextProperty (vtkTextProperty* textproperty); - - /** - The world is not always what we think it is ... - - Use this method to move the viewer slice such that the position - (in world coordinates) given by the arguments is contained by - the slice plane. If the given position is outside the bounds - of the image, then the slice will be as close as possible. - */ - virtual void SetWorldCoordinates (double x, double y, double z) - { - double pos[3] = {x,y,z}; - this->SetWorldCoordinates (pos); - } - virtual void SetWorldCoordinates (double pos[3]){}; - - - - /** - Add a dataset to the view (has to be subclass of vtkPointSet). - The dataset will be cut through the implicit slice plane - (GetImplicitSlicePlane()). - - This results in a loss of dimensionality, i.e. tetrahedron will be displayed - as triangles, triangles as lines, lines as points. - A vtkProperty of the dataset can be specified. - */ - virtual void AddDataSet (vtkDataSet* dataset, - vtkProperty* property = NULL, - const bool& intersection = true ) {}; - virtual bool RemoveDataSet (vtkDataSet* dataset); - - /** - Set/Get the current slice to display (depending on the orientation - this can be in X, Y or Z). - */ - virtual void SetSlice(int s) - { this->Superclass::SetSlice (s); }; - - /** - Convert an indices coordinate point (image coordinates) into a world - coordinate point - */ - virtual double* GetWorldCoordinatesFromImageCoordinates (int indices[3]); - - /** - Convert a world coordinate point into an image indices coordinate point - */ - virtual int* GetImageCoordinatesFromWorldCoordinates (double position[3]); - - /** - Get the pixel value at a given world coordinate point in space, return - zero if out of bounds. - */ - virtual double GetValueAtPosition(double worldcoordinates[3], - int component=0 ); - - /** - Set the background color. Format is RGB, 0 <= R,G,B <=1 - Example: SetBackground(0.9,0.9,0.9) for grey-white. - */ - virtual void SetBackground(double rgb[3]); - virtual void SetBackground(double r, double g, double b); - virtual double* GetBackground(void); - - /** - Reset the camera - */ - virtual void ResetCamera(void); - /** - Reset position - zoom to default - */ - virtual void Reset(void); - /** - Show/Hide the annotations. - */ - vtkGetMacro (ShowAnnotations, int); - /** - Show/Hide the annotations. - */ - virtual void SetShowAnnotations (int); - /** - Show/Hide the annotations. - */ - vtkBooleanMacro (ShowAnnotations, int); - /** - Enable or Disable interaction on the view. - */ - virtual void Enable (void); - /** - Enable or Disable interaction on the view. - */ - virtual void Disable (void); - /** - Enable or Disable interaction on the view. - */ - virtual int GetEnabled (void); - virtual vtkRenderWindowInteractor* GetRenderWindowInteractor(); - - protected: - - vtkViewColorImage(); - ~vtkViewColorImage(); - - // Description: - vtkMatrix4x4* OrientationMatrix; - vtkCornerAnnotation* CornerAnnotation; - vtkOrientationAnnotation* OrientationAnnotation; - vtkTextProperty* TextProperty; - vtkProp3DCollection* Prop3DCollection; - vtkDataSetCollection* DataSetCollection; - vtkMatrixToLinearTransform* OrientationTransform; - - int ShowAnnotations; - -}; - -#endif /* _vtkViewColorImage_h_ */ diff --git a/branches/ColorViewer/ExternalCode/MegaVTK/vtkRenderingAddOn/vtkViewColorImage2D.cxx b/branches/ColorViewer/ExternalCode/MegaVTK/vtkRenderingAddOn/vtkViewColorImage2D.cxx deleted file mode 100644 index 9115d86b..00000000 --- a/branches/ColorViewer/ExternalCode/MegaVTK/vtkRenderingAddOn/vtkViewColorImage2D.cxx +++ /dev/null @@ -1,812 +0,0 @@ -/*======================================================================== - Copyright (c) INRIA - ASCLEPIOS Project (http://www-sop.inria.fr/asclepios). - All rights reserved. - - Redistribution and use in source and binary forms, with or without - modification, are permitted provided that the following conditions are met: - - * Redistributions of source code must retain the above copyright notice, - this list of conditions and the following disclaimer. - - * Redistributions in binary form must reproduce the above copyright notice, - this list of conditions and the following disclaimer in the documentation - and/or other materials provided with the distribution. - - * Neither the name of INRIA or ASCLEPIOS, nor the names of any contributors - may be used to endorse or promote products derived from this software - without specific prior written permission. - - * Modified source versions must be plainly marked as such, and must not be - misrepresented as being the original software. - - THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDER AND CONTRIBUTORS ``AS IS'' - AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE - IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE - ARE DISCLAIMED. IN NO EVENT SHALL THE AUTHORS OR CONTRIBUTORS BE LIABLE FOR - ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL - DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR - SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER - CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, - OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE - OF THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE. - =========================================================================*/ - -/*========================================================================= - Modifications were made by the GoFigure Dev. Team. - while at Megason Lab, Systems biology, Harvard Medical school, 2009 - - Copyright (c) 2009, President and Fellows of Harvard College. - All rights reserved. - - Redistribution and use in source and binary forms, with or without - modification, are permitted provided that the following conditions are met: - - Redistributions of source code must retain the above copyright notice, - this list of conditions and the following disclaimer. - Redistributions in binary form must reproduce the above copyright notice, - this list of conditions and the following disclaimer in the documentation - and/or other materials provided with the distribution. - Neither the name of the President and Fellows of Harvard College - nor the names of its contributors may be used to endorse or promote - products derived from this software without specific prior written - permission. - - THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS - "AS IS" AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, - THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR - PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT OWNER OR CONTRIBUTORS - BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, - OR CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT - OF SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR PROFITS; - OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, - WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE - OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF - ADVISED OF THE POSSIBILITY OF SUCH DAMAGE. - - =========================================================================*/ - -#include "vtkViewColorImage2D.h" - -#include "vtkCamera.h" -#include "vtkCommand.h" -#include "vtkImageActor.h" -#include "vtkImageData.h" -#include "vtkInteractorStyleImage.h" -#include "vtkObjectFactory.h" -#include "vtkRenderWindow.h" -#include "vtkRenderWindowInteractor.h" -#include "vtkRenderer.h" -#include "vtkMatrix4x4.h" -#include "vtkTransform.h" -#include "vtkOrientationAnnotation.h" -#include "vtkCornerAnnotation.h" -#include "vtkTextProperty.h" -#include "vtkMath.h" -#include "vtkPlane.h" -#include "vtkCutter.h" -#include "vtkClipPolyData.h" -#include "vtkActor.h" -#include "vtkPolyDataMapper.h" -#include "vtkProp3DCollection.h" -#include "vtkDataSetCollection.h" -#include "vtkPoints.h" -#include "vtkIdList.h" -#include "vtkOutlineSource.h" -#include "vtkMatrixToLinearTransform.h" -#include "vtkPointData.h" -#include "vtkUnsignedCharArray.h" -#include "vtkIntArray.h" -#include "vtkImageAccumulate.h" -#include "vtkInteractorStyleImage2D.h" -#include "vtkViewColorImage2DCommand.h" - -#include -#include - -vtkCxxRevisionMacro(vtkViewColorImage2D, "$Revision: 2 $"); -vtkStandardNewMacro(vtkViewColorImage2D); - -//---------------------------------------------------------------------------- -vtkViewColorImage2D::vtkViewColorImage2D() -{ - this->ConventionMatrix = vtkMatrix4x4::New(); - this->SliceImplicitPlane = vtkPlane::New(); - this->AdjustmentTransform = vtkTransform::New(); - this->SlicePlane = vtkPolyData::New(); - this->Command = vtkViewColorImage2DCommand::New(); - - this->Command->SetViewer( this); - - this->AdjustmentTransform->Identity(); - this->SliceImplicitPlane->SetOrigin( 0,0,0); - this->SliceImplicitPlane->SetNormal( 0,0,1); - - this->ViewConvention = vtkViewColorImage2D::VIEW_CONVENTION_RADIOLOGICAL; - this->ViewOrientation = vtkViewColorImage2D::VIEW_ORIENTATION_AXIAL; - - this->ConventionMatrix->Zero(); - this->ConventionMatrix->SetElement( 2,0, 1); - this->ConventionMatrix->SetElement( 2,1, 1); - this->ConventionMatrix->SetElement( 1,2, -1); - this->ConventionMatrix->SetElement( 0,3, 1); - this->ConventionMatrix->SetElement( 1,3, -1); - this->ConventionMatrix->SetElement( 2,3, -1); - - this->InitializeSlicePlane(); - this->Zoom = 1.; -} - -//---------------------------------------------------------------------------- -vtkViewColorImage2D::~vtkViewColorImage2D() -{ - this->ConventionMatrix->Delete(); - this->SliceImplicitPlane->Delete(); - this->SlicePlane->Delete(); - this->AdjustmentTransform->Delete(); - this->Command->Delete(); -} - -//---------------------------------------------------------------------------- -void vtkViewColorImage2D::SetViewConvention(int convention) -{ - if( ( convention < vtkViewColorImage2D::VIEW_CONVENTION_RADIOLOGICAL) || - convention == this->ViewConvention) - return; - - this->ViewConvention = convention; - - this->ConventionMatrix->SetElement( 2,0, 1); - this->ConventionMatrix->SetElement( 2,1, 1); - this->ConventionMatrix->SetElement( 1,2, -1); - - int x_watcher, y_watcher, z_watcher; - - switch(convention) - { - case vtkViewColorImage2D::VIEW_CONVENTION_RADIOLOGICAL: - default: - x_watcher = 1; - y_watcher = -1; - z_watcher = -1; - break; - case vtkViewColorImage2D::VIEW_CONVENTION_NEUROLOGICAL: - x_watcher = 1; - y_watcher = 1; - z_watcher = 1; - break; - ///\todo why not adding cardiologic conventions with oblique points of view ? - /// actually we can't: oblique point of view implies resampling data: loss of - /// data... and we don't want that, do we ? - } - this->ConventionMatrix->SetElement( 0,3, x_watcher); - this->ConventionMatrix->SetElement( 1,3, y_watcher); - this->ConventionMatrix->SetElement( 2,3, z_watcher); - - this->UpdateOrientation(); -} - -//---------------------------------------------------------------------------- -void vtkViewColorImage2D::SetViewOrientation(int orientation) -{ - ///\todo: in terms of view orientation here we can add some cardiac specific: - /// short axis, long axis, and 4-chambers !!! exiting ! - if( ( orientation < vtkViewColorImage2D::VIEW_ORIENTATION_SAGITTAL) || - orientation == this->ViewOrientation) - return; - - this->ViewOrientation = orientation; - unsigned int sliceorientation = 2; - double dot = 0; - for( unsigned int i=0; i<3; i++) - if( dot < fabs( this->GetOrientationMatrix()->GetElement( orientation, i))) - { - dot = fabs( this->GetOrientationMatrix()->GetElement( orientation, i)); - sliceorientation = i; - } - this->SetSliceOrientation( sliceorientation); -} -//---------------------------------------------------------------------------- -void vtkViewColorImage2D::SetOrientationMatrix( vtkMatrix4x4* matrix) -{ - this->Superclass::SetOrientationMatrix( matrix); - this->UpdateOrientation(); -} - - - -//---------------------------------------------------------------------------- -void vtkViewColorImage2D::InitializeSlicePlane(void) -{ - vtkPoints* points = vtkPoints::New(); - this->SlicePlane->SetPoints( points); - points->InsertNextPoint( 0, 0, 0); - points->InsertNextPoint( 1, 0, 0); - points->InsertNextPoint( 0, 1, 0); - points->InsertNextPoint( 1, 1, 0); - this->SlicePlane->Allocate( 4); - - vtkIdType pts[4]; - pts[0] = 0; pts[1] = 1; pts[2] = 3; pts[3] = 2; - this->SlicePlane->InsertNextCell( VTK_QUAD, 4, pts); - pts[0] = 0; pts[1] = 2; pts[2] = 3; pts[3] = 1; - this->SlicePlane->InsertNextCell( VTK_QUAD, 4, pts); - points->Delete(); - - vtkUnsignedCharArray* array = vtkUnsignedCharArray::New(); - array->SetName( "Colors"); - array->SetNumberOfComponents( 3); - unsigned char vals[3]; - vals[0] = 255; vals[1] = 0; vals[2] = 0; - array->InsertNextTupleValue( vals); - array->InsertNextTupleValue( vals); - array->InsertNextTupleValue( vals); - array->InsertNextTupleValue( vals); - - this->SlicePlane->GetPointData()->SetScalars( array); - array->Delete(); -} - -//---------------------------------------------------------------------------- -void vtkViewColorImage2D::UpdateOrientation() -{ - this->Superclass::UpdateOrientation(); - int axis = this->SetCameraToConvention(); - this->ViewOrientation = axis; - - this->SetAnnotationToConvention(); - this->SetSlicePlaneToConvention( axis); - this->UpdateSlicePlane(); -} - -//---------------------------------------------------------------------------- -void vtkViewColorImage2D::SetWorldCoordinates(double pos[3]) -{ - this->SetSlice( this->GetSliceForWorldCoordinates( pos)); -} - -//---------------------------------------------------------------------------- -int vtkViewColorImage2D::SetCameraToConvention(void) -{ - - vtkCamera *cam = this->Renderer ? this->Renderer->GetActiveCamera() : NULL; - if( !cam) - return -1; - - double position[4], focalpoint[4], viewup[4]; - double conventionposition[4]; - double conventionview[4]; - double focaltoposition[3]; - std::vector viewupchoices; - double first[3], second[3], third[3], fourth[3]; - bool inverseposition; - - // First recover information from the camera. - // Recover also information from the convention matrix - unsigned int i; - for( i=0; i<3; i++ ) - { - position[i] = cam->GetPosition()[i]; - focalpoint[i] = cam->GetFocalPoint()[i]; - conventionposition[i] = this->ConventionMatrix->GetElement( i,3); - conventionview[i] = this->ConventionMatrix->GetElement( i, - this->SliceOrientation ); - } - - position[3] = 1; - focalpoint[3] = 1; - conventionview[3] = 0; - viewup[3] = 0; - - // Apply the orientation matrix to all this information - this->GetOrientationMatrix()->MultiplyPoint( position, position ); - this->GetOrientationMatrix()->MultiplyPoint( focalpoint, focalpoint ); - this->GetOrientationMatrix()->MultiplyPoint( conventionview, conventionview ); - this->GetOrientationMatrix()->MultiplyPoint( conventionposition, - conventionposition ); - - // Compute the vector perpendicular to the view - for( i=0; i<3; i++ ) - focaltoposition[i] = position[i] - focalpoint[i]; - - // Deal with the position : - // invert it if necessary( symetry among the focal point) - inverseposition =( vtkMath::Dot( focaltoposition, conventionposition ) < 0 ); - if( inverseposition) - for( i=0; i<3; i++ ) - position[i] -= 2*focaltoposition[i]; - - // Now we now we have 4 choices for the View-Up information - for( i=0; i<3; i++ ) - { - first[i] = conventionview[i]; - second[i] = -conventionview[i]; - } - - vtkMath::Cross( first, focaltoposition, third ); - vtkMath::Cross( second, focaltoposition, fourth ); - vtkMath::Normalize( third ); - vtkMath::Normalize( fourth ); - - viewupchoices.push_back( first ); - viewupchoices.push_back( second ); - viewupchoices.push_back( third ); - viewupchoices.push_back( fourth ); - - // To choose between these choices, first we find the axis - // the closest to the focaltoposition vector - unsigned int id = 0; - double dot = 0; - for( i=0; i<3; i++ ) - { - if( dot < fabs( focaltoposition[i] ) ) - { - dot = fabs( focaltoposition[i] ); - id = i; - } - } - - // Then we choose the convention matrix vector correspondant to the - // one we just found - for( i=0; i<3; i++ ) - conventionview[i] = this->ConventionMatrix->GetElement( i, id ); - - // Then we pick from the 4 solutions the closest to the - // vector just found - unsigned int id2 = 0; - double dot2 = 0; - for( i=0; iSetPosition(position[0], position[1], position[2]); - cam->SetFocalPoint(focalpoint[0], focalpoint[1], focalpoint[2]); - cam->SetViewUp(viewup[0], viewup[1], viewup[2]); - - this->SliceImplicitPlane->SetNormal( focaltoposition ); - - double view_plane_normal[3]; - cam->GetViewPlaneNormal( view_plane_normal ); - - // Rotation of the( Anterior-Posterior)( Ventral-Dorsal) View - if( this->ViewOrientation == 0 ) - cam->Roll( -90. ); - - // these lines are meant to fix the bug that make the line - // actor appear behind the 2D scene... - double translation[3]; - for( i=0; i<3; i++ ) - translation[i] = 0.01 * view_plane_normal[i]; - this->AdjustmentTransform->Identity(); - this->AdjustmentTransform->Translate( translation); - - return id; -} - -//---------------------------------------------------------------------------- -void vtkViewColorImage2D::SetAnnotationToConvention(void) -{ - vtkCamera *cam = this->Renderer ? this->Renderer->GetActiveCamera() : NULL; - if( !cam) - return; - - std::string matrix[3][2]; - matrix[0][0] = "R";matrix[0][1] = "L"; - matrix[1][0] = "A";matrix[1][1] = "P"; - matrix[2][0] = "V";matrix[2][1] = "D"; - - std::string solution[4]; - - ///\todo surely there is a simpler way to do all of that ! - - double* viewup = cam->GetViewUp(); - double* normal = cam->GetViewPlaneNormal(); - double rightvector[3]; - vtkMath::Cross( normal, viewup, rightvector); - - unsigned int id1 = 0; - unsigned int id2 = 0; - unsigned int id3 = 0; - double dot1 = 0; - double dot2 = 0; - double dot3 = 0; - - for( unsigned int i=0; i<3; i++) - { - if( dot1 <= fabs( viewup[i])) - { - dot1 = fabs( viewup[i]); - id1 = i; - } - if( dot2 <= fabs( rightvector[i])) - { - dot2 = fabs( rightvector[i]); - id2 = i; - } - if( dot3 <= fabs( normal[i])) - { - dot3 = fabs( normal[i]); - id3 = i; - } - } - - if( viewup[id1] > 0) - { - solution[3] = matrix[id1][0]; - solution[1] = matrix[id1][1]; - } else { - solution[3] = matrix[id1][1]; - solution[1] = matrix[id1][0]; - } - if( rightvector[id2] > 0) - { - solution[0] = matrix[id2][0]; - solution[2] = matrix[id2][1]; - } else { - solution[0] = matrix[id2][1]; - solution[2] = matrix[id2][0]; - } - - for( unsigned int i=0; i<4; i++) - this->OrientationAnnotation->SetText( i, solution[i].c_str()); -} - - -//---------------------------------------------------------------------------- -void vtkViewColorImage2D::SetSlicePlaneToConvention(unsigned int axis) -{ - unsigned char vals[3] = {0,0,0}; - vals[axis] = 255; - - vtkUnsignedCharArray* array = vtkUnsignedCharArray::SafeDownCast( - this->SlicePlane->GetPointData()->GetScalars() ); - - if( !array) - return; - - array->SetTupleValue( 0, vals); - array->SetTupleValue( 1, vals); - array->SetTupleValue( 2, vals); - array->SetTupleValue( 3, vals); -} - -//---------------------------------------------------------------------------- -void vtkViewColorImage2D::SetSlice( int s) -{ - vtkCamera *cam = this->Renderer ? this->Renderer->GetActiveCamera() : NULL; - if( !cam) - return; - int *range = this->GetSliceRange(); - if( range &&( s >= range[0]) &&( s <= range[1]) ) - { - double* pos = this->GetWorldCoordinatesForSlice( s); - this->SliceImplicitPlane->SetOrigin( pos); - this->Superclass::SetSlice(s); - this->UpdateSlicePlane(); - } - else - this->Superclass::SetSlice(s); -} - -//---------------------------------------------------------------------------- -void vtkViewColorImage2D::UpdateSlicePlane( void) -{ - vtkPoints* oldpoints = vtkPoints::New(); - vtkPoints* points = vtkPoints::New(); - double x[3]; - double* bounds = this->ImageActor->GetDisplayBounds( ); - unsigned int added1; - unsigned int added2; - - for( unsigned int i=0; i<4; i++) - { - added1 =( !(i%2)) ? 1 : 0; - added2 =( i<2) ? 1 : 0; - x[(this->SliceOrientation+1)%3] = - bounds[2*((this->SliceOrientation+1)%3)+added1]; - x[(this->SliceOrientation+2)%3] = - bounds[2*((this->SliceOrientation+2)%3)+added2]; - x[this->SliceOrientation] = bounds[2*this->SliceOrientation]; - oldpoints->InsertPoint(i,x); - } - this->OrientationTransform->TransformPoints( oldpoints, points); - this->SlicePlane->SetPoints( points); - oldpoints->Delete(); - points->Delete(); -} - - -//---------------------------------------------------------------------------- -int vtkViewColorImage2D::GetSliceForWorldCoordinates(double pos[3]) -{ - int* indices = this->GetImageCoordinatesFromWorldCoordinates( pos); - return indices[this->SliceOrientation]; -} - -//---------------------------------------------------------------------------- -double* vtkViewColorImage2D::GetWorldCoordinatesForSlice(int slice) -{ - int indices[3] = {slice, slice, slice}; - return this->GetWorldCoordinatesFromImageCoordinates( indices); -} - -//---------------------------------------------------------------------------- -void vtkViewColorImage2D::ResetPosition( void ) -{ - if( !this->GetInput()) - return; - - int *range = this->GetSliceRange(); - this->SetSlice( vtkMath::Round( static_cast(0.5*(range[1]-range[0]))) ); -} - -//---------------------------------------------------------------------------- -void vtkViewColorImage2D::ResetCamera(void) -{ - this->Zoom = 1.; - - double bounds[6]; - this->GetInput()->GetBounds( bounds ); - - double focal[3]; - focal[0] = 0.5 *( bounds[0] + bounds[1] ); - focal[1] = 0.5 *( bounds[2] + bounds[3] ); - focal[2] = 0.5 *( bounds[4] + bounds[5] ); - - double pos[3]; - pos[0] = focal[0]; - pos[1] = focal[1]; - pos[2] = focal[2]; - - double length[3]; - length[0] = 0.5 *( bounds[1] - bounds[0] ); - length[1] = 0.5 *( bounds[3] - bounds[2] ); - length[2] = 0.5 *( bounds[5] - bounds[4] ); - - double radius = 0.75 * sqrt( length[0] * length[0] + - length[1] * length[1] + - length[2] * length[2] ); - - vtkCamera *camera = this->GetRenderer()->GetActiveCamera(); - double distance = - radius/sin( camera->GetViewAngle()*vtkMath::Pi()/360.0 ); - - double view_plane_normal[3]; - camera->GetViewPlaneNormal( view_plane_normal ); - double* vup = camera->GetViewUp(); - - if( fabs( vtkMath::Dot( vup, view_plane_normal ) ) > 0.999 ) - { - vtkWarningMacro(<<"Resetting view-up since view plane normal is parallel"); - camera->SetViewUp(-vup[2], vup[0], vup[1]); - } - - pos[0] += distance * view_plane_normal[0]; - pos[1] += distance * view_plane_normal[1]; - pos[2] += distance * view_plane_normal[2]; - - this->SetCameraFocalAndPosition( focal, pos ); - - double max_length = std::max( length[0], std::max( length[1], length[2] ) ); - bounds[0] = focal[0] - 50. * max_length; - bounds[1] = focal[0] + 50. * max_length; - bounds[2] = focal[1] - 50. * max_length; - bounds[3] = focal[1] + 50. * max_length; - bounds[4] = focal[2] - 50. * max_length; - bounds[5] = focal[2] + 50. * max_length; - this->GetRenderer()->ResetCameraClippingRange( bounds ); - - camera->SetParallelScale(radius); -} -//---------------------------------------------------------------------------- -void vtkViewColorImage2D::Reset( void) -{ - this->ResetPosition(); - this->ResetCamera(); -} - -//---------------------------------------------------------------------------- -void vtkViewColorImage2D::SetCameraFocalAndPosition( double focal[3], double pos[3] ) -{ - vtkRenderer* ren = this->GetRenderer(); - - if( !ren ) - { - return; - } - vtkCamera* camera = ren->GetActiveCamera(); - - if( !camera ) - { - return; - } - - camera->SetFocalPoint( focal[0], focal[1], focal[2] ); - camera->SetPosition( pos[0], pos[1], pos[2] ); -} - -void vtkViewColorImage2D::GetCameraFocalAndPosition( double focal[3], double pos[3] ) -{ - vtkRenderer* ren = this->GetRenderer(); - - if( !ren ) - { - return; - } - vtkCamera* camera = ren->GetActiveCamera(); - - if( !camera ) - { - return; - } - - camera->GetPosition( pos ); - camera->GetFocalPoint( focal ); -} -//---------------------------------------------------------------------------- -double* vtkViewColorImage2D::GetWorldCoordinatesFromDisplayPosition( int xy[2] ) -{ - - if( !this->GetInput() || !this->GetRenderer()) - { - double* nullpos = new double[3]; - nullpos[0] = 0; nullpos[1] = 0; nullpos[2] = 0; - return nullpos; - } - - double* slicepos = this->GetWorldCoordinatesForSlice( this->GetSlice()); - this->GetRenderer()->SetWorldPoint( slicepos[0], slicepos[1], slicepos[2], - 1.0); - this->GetRenderer()->WorldToDisplay(); - this->GetRenderer()->SetDisplayPoint( xy[0], xy[1], - this->GetRenderer()->GetDisplayPoint()[2]); - this->GetRenderer()->DisplayToWorld(); - return this->GetRenderer()->GetWorldPoint(); -} - - -//---------------------------------------------------------------------------- -void vtkViewColorImage2D::InstallPipeline() -{ - if( this->RenderWindow && this->Renderer) - { - this->RenderWindow->AddRenderer(this->Renderer); - } - - if( this->Interactor) - { - if( !this->InteractorStyle) - { - this->InteractorStyle = vtkInteractorStyleImage2D::New(); - this->Interactor->SetInteractorStyle(this->InteractorStyle); - this->InteractorStyle->AddObserver( - vtkCommand::KeyPressEvent, this->Command); - this->InteractorStyle->AddObserver( - vtkViewColorImage2DCommand::StartSliceMoveEvent, this->Command); - this->InteractorStyle->AddObserver( - vtkViewColorImage2DCommand::SliceMoveEvent, this->Command); - this->InteractorStyle->AddObserver( - vtkViewColorImage2DCommand::EndSliceMoveEvent, this->Command); - this->InteractorStyle->AddObserver( - vtkViewColorImage2DCommand::ResetViewerEvent, this->Command); - this->InteractorStyle->AddObserver( - vtkViewColorImage2DCommand::ZoomEvent, this->Command); - this->InteractorStyle->AddObserver( - vtkViewColorImage2DCommand::PanEvent, this->Command); - this->InteractorStyle->AddObserver( vtkCommand::InteractionEvent, - this->Command); - } - - this->Interactor->SetInteractorStyle(this->InteractorStyle); - this->Interactor->SetRenderWindow(this->RenderWindow); - } - - if( this->Renderer && this->ImageActor) - { - this->Renderer->AddViewProp(this->ImageActor); - } -} - -//---------------------------------------------------------------------------- -void vtkViewColorImage2D::SetInterpolate(const int& val ) -{ - if( this->ImageActor) - { - this->ImageActor->SetInterpolate( val); - } -} - -//---------------------------------------------------------------------------- -int vtkViewColorImage2D::GetInterpolate(void) -{ - if( this->ImageActor) - return this->ImageActor->GetInterpolate(); - return 0; -} - -//---------------------------------------------------------------------------- -void vtkViewColorImage2D::AddDataSet( vtkPolyData* dataset, - vtkProperty* property, - const bool& intersection ) -{ - vtkCamera *cam = this->Renderer ? this->Renderer->GetActiveCamera() : NULL; - if( !cam ) - return; - - vtkPolyDataMapper* mapper = vtkPolyDataMapper::New(); - vtkActor* actor = vtkActor::New(); - - vtkClipPolyData* cutter = vtkClipPolyData::New(); - - if( intersection ) - { - cutter->SetInputConnection( 0, dataset->GetProducerPort()); - cutter->SetClipFunction( this->SliceImplicitPlane ); - cutter->InsideOutOn(); - mapper->SetInputConnection( 0, cutter->GetOutputPort()); - } - else - { - mapper->SetInput( dataset ); - } - - actor->SetMapper( mapper ); - if( property ) - actor->SetProperty( property ); - - actor->SetUserTransform( this->AdjustmentTransform ); - - this->Renderer->AddViewProp( actor ); - this->DataSetCollection->AddItem( dataset ); - this->Prop3DCollection->AddItem( actor ); - - cutter->Delete(); - mapper->Delete(); - actor->Delete(); -} -//---------------------------------------------------------------------------- -//---------------------------------------------------------------------------- -void vtkViewColorImage2D::AddDataSet( vtkDataSet* dataset, - vtkProperty* property, - const bool& intersection ) -{ - vtkCamera *cam = this->Renderer ? this->Renderer->GetActiveCamera() : NULL; - if( !cam ) - return; - - vtkPolyDataMapper* mapper = vtkPolyDataMapper::New(); - vtkActor* actor = vtkActor::New(); - - vtkCutter* cutter = vtkCutter::New(); - - if( intersection ) - { - cutter->SetInputConnection( 0, dataset->GetProducerPort()); - cutter->SetCutFunction( this->SliceImplicitPlane ); - mapper->SetInputConnection( 0, cutter->GetOutputPort()); - } - else - { - mapper->SetInput( vtkPolyData::SafeDownCast( dataset ) ); - } - - actor->SetMapper( mapper ); - if( property ) - actor->SetProperty( property ); - - actor->SetUserTransform( this->AdjustmentTransform ); - - this->Renderer->AddViewProp( actor ); - this->DataSetCollection->AddItem( dataset ); - this->Prop3DCollection->AddItem( actor ); - - cutter->Delete(); - mapper->Delete(); - actor->Delete(); -} diff --git a/branches/ColorViewer/ExternalCode/MegaVTK/vtkRenderingAddOn/vtkViewColorImage2D.h b/branches/ColorViewer/ExternalCode/MegaVTK/vtkRenderingAddOn/vtkViewColorImage2D.h deleted file mode 100644 index 44acf6e0..00000000 --- a/branches/ColorViewer/ExternalCode/MegaVTK/vtkRenderingAddOn/vtkViewColorImage2D.h +++ /dev/null @@ -1,271 +0,0 @@ -/*======================================================================== - Copyright (c) INRIA - ASCLEPIOS Project (http://www-sop.inria.fr/asclepios). - All rights reserved. - - Redistribution and use in source and binary forms, with or without - modification, are permitted provided that the following conditions are met: - - * Redistributions of source code must retain the above copyright notice, - this list of conditions and the following disclaimer. - - * Redistributions in binary form must reproduce the above copyright notice, - this list of conditions and the following disclaimer in the documentation - and/or other materials provided with the distribution. - - * Neither the name of INRIA or ASCLEPIOS, nor the names of any contributors - may be used to endorse or promote products derived from this software - without specific prior written permission. - - * Modified source versions must be plainly marked as such, and must not be - misrepresented as being the original software. - - THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDER AND CONTRIBUTORS ``AS IS'' - AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE - IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE - ARE DISCLAIMED. IN NO EVENT SHALL THE AUTHORS OR CONTRIBUTORS BE LIABLE FOR - ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL - DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR - SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER - CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, - OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE - OF THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE. - =========================================================================*/ - -/*========================================================================= - Modifications were made by the GoFigure Dev. Team. - while at Megason Lab, Systems biology, Harvard Medical school, 2009 - - Copyright (c) 2009, President and Fellows of Harvard College. - All rights reserved. - - Redistribution and use in source and binary forms, with or without - modification, are permitted provided that the following conditions are met: - - Redistributions of source code must retain the above copyright notice, - this list of conditions and the following disclaimer. - Redistributions in binary form must reproduce the above copyright notice, - this list of conditions and the following disclaimer in the documentation - and/or other materials provided with the distribution. - Neither the name of the President and Fellows of Harvard College - nor the names of its contributors may be used to endorse or promote - products derived from this software without specific prior written - permission. - - THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS - "AS IS" AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, - THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR - PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT OWNER OR CONTRIBUTORS - BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, - OR CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT - OF SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR PROFITS; - OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, - WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE - OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF - ADVISED OF THE POSSIBILITY OF SUCH DAMAGE. - - =========================================================================*/ - -#ifndef _vtkViewColorImage2D_h_ -#define _vtkViewColorImage2D_h_ - -#include "vtkViewColorImage.h" - -class vtkPlane; -class vtkViewColorImage2DCommand; -class vtkTransform; -class vtkImageBlendWithMask; - -/** - -*/ - - -class vtkViewColorImage2D : public vtkViewColorImage -{ - - public: - - static vtkViewColorImage2D* New(); - vtkTypeRevisionMacro(vtkViewColorImage2D, vtkViewColorImage); - /** - Description: - The orientation of the view is a abstract representation of the object - we are looking at. It results from the acquisition plane. Setting the View - Orientation by calling SetViewOrientation() will imply the view to set its - inner "slice" orientation. (slice orientation == 2 means plane of - acquisition.) - - IMPORTANT NOTE: - - The view orientations defined here are orthogonal to the normal basis - in the scanner. A very interesting improvement would be to define "oblique" - view orientations for cardiac imaging, something like: - - VIEW_ORIENTATION_SHORT_AXIS, VIEW_ORIENTATION_LONG_AXIS, and - VIEW_ORIENTATION_FOUR_CHAMBER could define the different views that are - usually used in cardiac imaging. - - From this user-input information, the idea would be to evaluate which slice - orientation does correspond to the requested view. This can be done by - evaluating the dot product between the axis of acquisition and a - pre-defined oblique axis that "should" correspond to the requested - orientation... - **/ - //BTX - enum - { - VIEW_ORIENTATION_SAGITTAL = 0, - VIEW_ORIENTATION_CORONAL = 1, - VIEW_ORIENTATION_AXIAL = 2 - }; - //ETX - /** - Description: - **/ - //BTX - enum - { - VIEW_CONVENTION_RADIOLOGICAL = 0, - VIEW_CONVENTION_NEUROLOGICAL = 1 - }; - //ETX - - /** - The SliceImplicitPlane instance (GetImplicitSlicePlane()) is the - implicit function that cuts every dataset that is added with AddDataSet(). - */ - vtkGetObjectMacro (SliceImplicitPlane, vtkPlane); - /** - The SlicePlane instance (GetSlicePlane()) is the polygonal - square corresponding to the slice plane, - it is updated each time the slice changes, - and is color-coded according to conventions - */ - vtkGetObjectMacro (SlicePlane, vtkPolyData); - /** - The world is not always what we think it is ... - - Use this method to move the viewer slice such that the position - (in world coordinates) given by the arguments is contained by - the slice plane. If the given position is outside the bounds - of the image, then the slice will be as close as possible. - */ - virtual void SetWorldCoordinates (double pos[3]); - - /** - Set/Get the current slice to display (depending on the orientation - this can be in X, Y or Z). - */ - virtual void SetSlice(int s); - - /** - Instead of setting the slice orientation to an axis (YZ - XZ - XY), - you can force the view to be axial (foot-head), coronal (front-back), - or sagittal (left-right). It will just use the OrientationMatrix - (GetOrientationMatrix()) to check which slice orientation to pick. - */ - vtkGetMacro (ViewOrientation, int); - virtual void SetViewOrientation (int orientation); - virtual void SetOrientationMatrix (vtkMatrix4x4* matrix); - - /** - The ViewConvention instance explains where to place the camera around - the patient. Default behaviour is Radiological convention, meaning - we respectively look at the patient from his feet, his face and his left - ear. - - For Neurological convention, we respectively look from the top of his head, - the the back of his head, and his left ear. - */ - ///\todo Why not adding cardiologic conventions where we look at the patient in - /// oblique angles ? - vtkGetMacro (ViewConvention, int); - virtual void SetViewConvention (int convention); - /** - Convert an indices coordinate point (image coordinates) into a world - coordinate point - */ - virtual double* GetWorldCoordinatesForSlice (int slice); - /** - Convert a world coordinate point into an image indices coordinate point - */ - virtual int GetSliceForWorldCoordinates(double pos[3]); - - virtual void ResetCamera(void); - /** - Reset the 3D position to center - */ - virtual void ResetPosition(void); - /** - Reset position - zoom - to default - */ - virtual void Reset(void); - /** - */ - virtual double* GetWorldCoordinatesFromDisplayPosition( int xy[2] ); - virtual double* GetWorldCoordinatesFromDisplayPosition( const int& x, const int& y ) - { - int xy[2] = {x,y}; - return this->GetWorldCoordinatesFromDisplayPosition( xy ); - } - - vtkSetMacro( Zoom, double ); - vtkGetMacro( Zoom, double ); - - vtkSetVector3Macro( CameraMotionVector, double ); - vtkGetVector3Macro( CameraMotionVector, double ); - - void SetCameraFocalAndPosition( double focal[3], double pos[3] ); - void GetCameraFocalAndPosition( double focal[3], double pos[3] ); - - vtkGetObjectMacro (Command, vtkViewColorImage2DCommand); - - virtual void SetInterpolate( const int& val ); - virtual int GetInterpolate (); - vtkBooleanMacro (Interpolate, int); - /** - Add a dataset to the view (has to be subclass of vtkPointSet). - The dataset will be cut through the implicit slice plane - (GetImplicitSlicePlane()). - - This results in a loss of dimensionality, i.e. tetrahedron will be displayed - as triangles, triangles as lines, lines as points. - A vtkProperty of the dataset can be specified. - */ - virtual void AddDataSet (vtkDataSet* dataset, - vtkProperty* property = NULL, - const bool& intersection = true ); - - virtual void AddDataSet( vtkPolyData* polydata, - vtkProperty* property = NULL, - const bool& intersection = true ); - - protected: - - vtkViewColorImage2D(); - ~vtkViewColorImage2D(); - - // Description: - virtual void UpdateOrientation(); - virtual int SetCameraToConvention (void); - virtual void SetAnnotationToConvention(void); - virtual void InitializeSlicePlane (void); - virtual void UpdateSlicePlane (void); - virtual void SetSlicePlaneToConvention (unsigned int axis); - virtual void InstallPipeline(); - - vtkMatrix4x4* ConventionMatrix; - vtkPlane* SliceImplicitPlane; - vtkTransform* AdjustmentTransform; - vtkPolyData* SlicePlane; - - vtkViewColorImage2DCommand* Command; - - int ViewOrientation; - int ViewConvention; - - double Zoom; - double CameraMotionVector[3]; -}; - -#endif /* _vtkViewColorImage2D_h_ */ diff --git a/branches/ColorViewer/ExternalCode/MegaVTK/vtkRenderingAddOn/vtkViewColorImage2DCollection.cxx b/branches/ColorViewer/ExternalCode/MegaVTK/vtkRenderingAddOn/vtkViewColorImage2DCollection.cxx deleted file mode 100644 index 07138afc..00000000 --- a/branches/ColorViewer/ExternalCode/MegaVTK/vtkRenderingAddOn/vtkViewColorImage2DCollection.cxx +++ /dev/null @@ -1,275 +0,0 @@ -/*======================================================================== - Copyright (c) INRIA - ASCLEPIOS Project (http://www-sop.inria.fr/asclepios). - All rights reserved. - - Redistribution and use in source and binary forms, with or without - modification, are permitted provided that the following conditions are met: - - * Redistributions of source code must retain the above copyright notice, - this list of conditions and the following disclaimer. - - * Redistributions in binary form must reproduce the above copyright notice, - this list of conditions and the following disclaimer in the documentation - and/or other materials provided with the distribution. - - * Neither the name of INRIA or ASCLEPIOS, nor the names of any contributors - may be used to endorse or promote products derived from this software - without specific prior written permission. - - * Modified source versions must be plainly marked as such, and must not be - misrepresented as being the original software. - - THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDER AND CONTRIBUTORS ``AS IS'' - AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE - IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE - ARE DISCLAIMED. IN NO EVENT SHALL THE AUTHORS OR CONTRIBUTORS BE LIABLE FOR - ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL - DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR - SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER - CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, - OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE - OF THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE. - =========================================================================*/ - -/*========================================================================= - Modifications were made by the GoFigure Dev. Team. - while at Megason Lab, Systems biology, Harvard Medical school, 2009 - - Copyright (c) 2009, President and Fellows of Harvard College. - All rights reserved. - - Redistribution and use in source and binary forms, with or without - modification, are permitted provided that the following conditions are met: - - Redistributions of source code must retain the above copyright notice, - this list of conditions and the following disclaimer. - Redistributions in binary form must reproduce the above copyright notice, - this list of conditions and the following disclaimer in the documentation - and/or other materials provided with the distribution. - Neither the name of the President and Fellows of Harvard College - nor the names of its contributors may be used to endorse or promote - products derived from this software without specific prior written - permission. - - THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS - "AS IS" AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, - THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR - PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT OWNER OR CONTRIBUTORS - BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, - OR CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT - OF SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR PROFITS; - OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, - WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE - OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF - ADVISED OF THE POSSIBILITY OF SUCH DAMAGE. - - =========================================================================*/ - -#include "vtkViewColorImage2DCollection.h" - -#include "vtkCamera.h" -#include "vtkCommand.h" -#include "vtkImageActor.h" -#include "vtkImageData.h" -#include "vtkInteractorStyleImage.h" -#include "vtkObjectFactory.h" -#include "vtkRenderWindow.h" -#include "vtkRenderWindowInteractor.h" -#include "vtkRenderer.h" -#include "vtkRendererCollection.h" -#include "vtkMatrix4x4.h" -#include "vtkOrientationAnnotation.h" -#include "vtkCornerAnnotation.h" -#include "vtkTextProperty.h" -#include "vtkMath.h" -#include "vtkPlane.h" -#include "vtkCutter.h" -#include "vtkActor.h" -#include "vtkPolyDataMapper.h" -#include "vtkProp3DCollection.h" -#include "vtkDataSetCollection.h" -#include "vtkPoints.h" -#include "vtkIdList.h" -#include "vtkOutlineSource.h" -#include "vtkMatrixToLinearTransform.h" -#include "vtkPointData.h" -#include "vtkUnsignedCharArray.h" -#include "vtkIntArray.h" -#include "vtkImageAccumulate.h" -#include "vtkProperty.h" - -#include "vtkViewColorImage2DCommand.h" -#include "vtkInteractorStyleImage2D.h" - -#include -#include -#include - -vtkCxxRevisionMacro(vtkViewColorImage2DCollection, "$Revision: 2 $"); -vtkStandardNewMacro(vtkViewColorImage2DCollection); - - -//---------------------------------------------------------------------------- -vtkViewColorImage2DCollection::vtkViewColorImage2DCollection() -{ - this->Command = vtkViewColorImage2DCollectionCommand::New(); - this->Command->SetCollection (this); - this->ExtraRenderWindow = NULL; -} - -//---------------------------------------------------------------------------- -vtkViewColorImage2DCollection::~vtkViewColorImage2DCollection() -{ - this->Command->Delete(); -} - - -// Add an object to the list. Does not prevent duplicate entries. -void vtkViewColorImage2DCollection::AddItem(vtkViewColorImage2D *a) -{ - this->Superclass::AddItem (a); - - a->GetInteractorStyle()->AddObserver (vtkViewColorImage2DCommand::SliceMoveEvent, - this->Command); - a->GetInteractorStyle()->AddObserver ( - vtkViewColorImage2DCommand::RequestedPositionEvent, this->Command); - a->GetInteractorStyle()->AddObserver ( - vtkViewColorImage2DCommand::ResetViewerEvent, this->Command); - -} - -// Remove an object from the list. Removes the first object found, not -// all occurrences. If no object found, list is unaffected. See warning -// in description of RemoveItem(int). -void vtkViewColorImage2DCollection::RemoveItem(vtkViewColorImage2D *a) -{ - this->Superclass::RemoveItem (a); -} - -// Remove all objects from the list. -void vtkViewColorImage2DCollection::RemoveAllItems() -{ - this->Superclass::RemoveAllItems (); -} - - -// Replace the i'th item in the collection with a -void vtkViewColorImage2DCollection::ReplaceItem(int i, vtkViewColorImage2D *a) -{ - this->Superclass::ReplaceItem (i, a); -} - - -// Remove the i'th item in the list. -// Be careful if using this function during traversal of the list using -// GetNextItemAsObject (or GetNextItem in derived class). The list WILL -// be shortened if a valid index is given! If this->Current is equal to the -// element being removed, have it point to then next element in the list. -void vtkViewColorImage2DCollection::RemoveItem(int i) -{ - this->Superclass::RemoveItem (i); -} - - -void vtkViewColorImage2DCollection::Initialize(void) -{ - vtkProperty* plane_property = vtkProperty::New(); - plane_property->SetRepresentationToWireframe(); - - for (int i=0; iGetNumberOfItems(); i++) - { - for (int j=0; jGetNumberOfItems(); j++) - { - this->GetItem (j)->AddDataSet( - this->GetItem (i)->GetSlicePlane(), plane_property, ( i != j ) ); - } - } - plane_property->Delete(); -} - -void vtkViewColorImage2DCollection::SyncRender(void) -{ - this->InitTraversal(); - vtkViewColorImage2D* item = this->GetNextItem(); - while(item) - { - item->Render (); - item = this->GetNextItem(); - } - if (this->ExtraRenderWindow) - this->ExtraRenderWindow->Render(); -} - - -void vtkViewColorImage2DCollection::SyncReset(void) -{ - this->InitTraversal(); - vtkViewColorImage2D* item = this->GetNextItem(); - while(item) - { - item->Reset (); - item = this->GetNextItem(); - } -} - -//---------------------------------------------------------------------------- -vtkViewColorImage2DCollectionCommand::vtkViewColorImage2DCollectionCommand() -{ -} - -//---------------------------------------------------------------------------- -void vtkViewColorImage2DCollectionCommand::SetCollection(vtkViewColorImage2DCollection* p) -{ - this->Collection = p; -} - -//---------------------------------------------------------------------------- -void vtkViewColorImage2DCollectionCommand::Execute(vtkObject *caller, - unsigned long event, - void *vtkNotUsed(callData)) -{ - if (!this->Collection) - return; - - vtkInteractorStyleImage2D *isi = - vtkInteractorStyleImage2D::SafeDownCast(caller); - this->GetCollection()->InitTraversal(); - vtkViewColorImage2D* v = this->GetCollection()->GetNextItem(); - vtkViewColorImage2D* viewer = NULL; - while(v) - { - if (isi == v->GetInteractorStyle()) - viewer = v; - v = this->GetCollection()->GetNextItem(); - } - - if (!isi || !viewer || !viewer->GetInput()) - return; - - // Reset - if (event == vtkViewColorImage2DCommand::ResetViewerEvent) - { - this->Collection->SyncReset(); - this->Collection->SyncRender(); - return; - } - - // Move - if (event == vtkViewColorImage2DCommand::SliceMoveEvent) - { - // do not synchronize this, but render all - this->Collection->SyncRender(); - - } - - // Position requested - if (event == vtkViewColorImage2DCommand::RequestedPositionEvent) - { - double* position = viewer->GetWorldCoordinatesFromDisplayPosition ( - isi->GetRequestedPosition ()); - this->Collection->SyncSetWorldCoordinates(position); - this->Collection->SyncRender(); - } -} - - diff --git a/branches/ColorViewer/ExternalCode/MegaVTK/vtkRenderingAddOn/vtkViewColorImage2DCollection.h b/branches/ColorViewer/ExternalCode/MegaVTK/vtkRenderingAddOn/vtkViewColorImage2DCollection.h deleted file mode 100644 index 2f8abef4..00000000 --- a/branches/ColorViewer/ExternalCode/MegaVTK/vtkRenderingAddOn/vtkViewColorImage2DCollection.h +++ /dev/null @@ -1,244 +0,0 @@ -/*======================================================================== - Copyright (c) INRIA - ASCLEPIOS Project (http://www-sop.inria.fr/asclepios). - All rights reserved. - - Redistribution and use in source and binary forms, with or without - modification, are permitted provided that the following conditions are met: - - * Redistributions of source code must retain the above copyright notice, - this list of conditions and the following disclaimer. - - * Redistributions in binary form must reproduce the above copyright notice, - this list of conditions and the following disclaimer in the documentation - and/or other materials provided with the distribution. - - * Neither the name of INRIA or ASCLEPIOS, nor the names of any contributors - may be used to endorse or promote products derived from this software - without specific prior written permission. - - * Modified source versions must be plainly marked as such, and must not be - misrepresented as being the original software. - - THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDER AND CONTRIBUTORS ``AS IS'' - AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE - IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE - ARE DISCLAIMED. IN NO EVENT SHALL THE AUTHORS OR CONTRIBUTORS BE LIABLE FOR - ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL - DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR - SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER - CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, - OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE - OF THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE. - =========================================================================*/ - -/*========================================================================= - Modifications were made by the GoFigure Dev. Team. - while at Megason Lab, Systems biology, Harvard Medical school, 2009 - - Copyright (c) 2009, President and Fellows of Harvard College. - All rights reserved. - - Redistribution and use in source and binary forms, with or without - modification, are permitted provided that the following conditions are met: - - Redistributions of source code must retain the above copyright notice, - this list of conditions and the following disclaimer. - Redistributions in binary form must reproduce the above copyright notice, - this list of conditions and the following disclaimer in the documentation - and/or other materials provided with the distribution. - Neither the name of the President and Fellows of Harvard College - nor the names of its contributors may be used to endorse or promote - products derived from this software without specific prior written - permission. - - THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS - "AS IS" AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, - THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR - PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT OWNER OR CONTRIBUTORS - BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, - OR CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT - OF SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR PROFITS; - OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, - WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE - OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF - ADVISED OF THE POSSIBILITY OF SUCH DAMAGE. - - =========================================================================*/ - -#ifndef _vtkViewColorImage2DCollection_h_ -#define _vtkViewColorImage2DCollection_h_ - -#include "vtkCollection.h" -#include "vtkCommand.h" - -#include "vtkViewColorImage2D.h" -/** - This macro can be useful as we frequently set - an instance this way, meaning unregistering previously set instance, - registering given instance, and call a modified event. - However this might be not the best place to define it... -*/ -//BTX -#define vtkSyncSetMacro(name, type, base ) \ - virtual void SyncSet##name (type _arg) \ - { \ - this->InitTraversal(); \ - base* item = this->GetNextItem(); \ - while(item) \ - { \ - item->Set##name (_arg); \ - item = this->GetNextItem(); \ - } \ - } -///ETX - -///BTX -#define vtkSyncSetObjectMacro(name, type, base) \ - virtual void SyncSet##name (type* _arg) \ - { \ - this->InitTraversal(); \ - base* item = this->GetNextItem(); \ - while(item) \ - { \ - item->Set##name (_arg); \ - item = this->GetNextItem(); \ - } \ - } - -///ETX - - -class vtkTextProperty; -class vtkCornerAnnotation; -class vtkOrientationAnnotation; -class vtkPlane; -class vtkActor; -class vtkDataSet; -class vtkPolyData; -class vtkProperty; -class vtkProp3DCollection; -class vtkDataSetCollection; -class vtkMatrixToLinearTransform; -class vtkViewColorImage2DCollectionCommand; - -/** - -*/ -// NOTE ALEX: could do a template here to manage color and greyscale with i -// the same class. -class vtkViewColorImage2DCollection : public vtkCollection -{ - public: - - static vtkViewColorImage2DCollection* New(); - vtkTypeRevisionMacro(vtkViewColorImage2DCollection, vtkCollection); - - // Description: - // Get the next vtkViewColorImage2D in the list. - // Return NULL when at the end of the list. - vtkViewColorImage2D *GetNextItem() { - return static_cast(this->GetNextItemAsObject());}; - - // Description: - // Get the next vtkViewColorImage2D in the list.Return NULL when at the end of - // the list. - vtkViewColorImage2D *GetItem(int i) { - return static_cast(this->GetItemAsObject(i));}; - - // Description: - // Add an object to the list. Does not prevent duplicate entries. - void AddItem(vtkViewColorImage2D*); - - // Description: - // Replace the i'th item in the collection with a - void ReplaceItem(int i, vtkViewColorImage2D *); - - // Description: - // Remove the i'th item in the list. - // Be careful if using this function during traversal of the list using - // GetNextItemAsObject (or GetNextItem in derived class). The list WILL - // be shortened if a valid index is given! If this->Current is equal to the - // element being removed, have it point to then next element in the list. - void RemoveItem(int i); - - // Description: - // Remove an object from the list. Removes the first object found, not - // all occurrences. If no object found, list is unaffected. See warning - // in description of RemoveItem(int). - void RemoveItem(vtkViewColorImage2D *); - - // Description: - // Remove all objects from the list. - void RemoveAllItems(); - - // Description: - // Initialize the viewers togethers. - void Initialize(void); - - - vtkGetObjectMacro (Command, vtkViewColorImage2DCollectionCommand); - vtkGetObjectMacro (ExtraRenderWindow, vtkRenderWindow); - void SetExtraRenderWindow (vtkRenderWindow* win) - { this->ExtraRenderWindow = win; } - - vtkSyncSetMacro (Slice, int, vtkViewColorImage2D); - vtkSyncSetMacro (SliceOrientation, int, vtkViewColorImage2D); - vtkSyncSetMacro (ShowAnnotations, int, vtkViewColorImage2D); - - vtkSyncSetObjectMacro (OrientationMatrix, vtkMatrix4x4, vtkViewColorImage2D); - vtkSyncSetObjectMacro (TextProperty, vtkTextProperty, vtkViewColorImage2D); - vtkSyncSetObjectMacro (Input, vtkImageData, vtkViewColorImage2D); - vtkSyncSetObjectMacro (InputConnection, vtkAlgorithmOutput, - vtkViewColorImage2D); - - vtkSyncSetObjectMacro (Size, int, vtkViewColorImage2D); - vtkSyncSetObjectMacro (Position, int, vtkViewColorImage2D); - vtkSyncSetObjectMacro (WorldCoordinates, double, vtkViewColorImage2D); - vtkSyncSetObjectMacro (Background, double, vtkViewColorImage2D); - - void SyncRender (void); - void SyncReset (void); - - protected: - - vtkViewColorImage2DCollection(); - ~vtkViewColorImage2DCollection(); - - vtkViewColorImage2DCollectionCommand* Command; - vtkRenderWindow* ExtraRenderWindow; -}; - - - - -class vtkViewColorImage2DCollectionCommand : - public vtkCommand -{ - - public: - - static vtkViewColorImage2DCollectionCommand *New() - {return new vtkViewColorImage2DCollectionCommand;}; - - vtkViewColorImage2DCollection* GetCollection (void) - { return this->Collection;}; - void SetCollection (vtkViewColorImage2DCollection* p); - - // Description: - // Satisfy the superclass API for callbacks. Recall that the caller is - // the instance invoking the event; eid is the event id (see - // vtkCommand.h); and calldata is information sent when the callback - // was invoked (e.g., progress value in the vtkCommand::ProgressEvent). - virtual void Execute(vtkObject *caller,unsigned long event, - void *vtkNotUsed(callData)); - - protected: - - vtkViewColorImage2DCollectionCommand(); - ~vtkViewColorImage2DCollectionCommand(){}; - - private: - vtkViewColorImage2DCollection* Collection; -}; - -#endif /* _vtkViewColorImage2DCollection_h_ */ diff --git a/branches/ColorViewer/ExternalCode/MegaVTK/vtkRenderingAddOn/vtkViewColorImage2DCommand.cxx b/branches/ColorViewer/ExternalCode/MegaVTK/vtkRenderingAddOn/vtkViewColorImage2DCommand.cxx deleted file mode 100644 index 6f85a866..00000000 --- a/branches/ColorViewer/ExternalCode/MegaVTK/vtkRenderingAddOn/vtkViewColorImage2DCommand.cxx +++ /dev/null @@ -1,269 +0,0 @@ -/*======================================================================== - Copyright (c) INRIA - ASCLEPIOS Project (http://www-sop.inria.fr/asclepios). - All rights reserved. - - Redistribution and use in source and binary forms, with or without - modification, are permitted provided that the following conditions are met: - - * Redistributions of source code must retain the above copyright notice, - this list of conditions and the following disclaimer. - - * Redistributions in binary form must reproduce the above copyright notice, - this list of conditions and the following disclaimer in the documentation - and/or other materials provided with the distribution. - - * Neither the name of INRIA or ASCLEPIOS, nor the names of any contributors - may be used to endorse or promote products derived from this software - without specific prior written permission. - - * Modified source versions must be plainly marked as such, and must not be - misrepresented as being the original software. - - THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDER AND CONTRIBUTORS ``AS IS'' - AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE - IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE - ARE DISCLAIMED. IN NO EVENT SHALL THE AUTHORS OR CONTRIBUTORS BE LIABLE FOR - ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL - DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR - SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER - CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, - OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE - OF THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE. - =========================================================================*/ - -/*========================================================================= - Modifications were made by the GoFigure Dev. Team. - while at Megason Lab, Systems biology, Harvard Medical school, 2009 - - Copyright (c) 2009, President and Fellows of Harvard College. - All rights reserved. - - Redistribution and use in source and binary forms, with or without - modification, are permitted provided that the following conditions are met: - - Redistributions of source code must retain the above copyright notice, - this list of conditions and the following disclaimer. - Redistributions in binary form must reproduce the above copyright notice, - this list of conditions and the following disclaimer in the documentation - and/or other materials provided with the distribution. - Neither the name of the President and Fellows of Harvard College - nor the names of its contributors may be used to endorse or promote - products derived from this software without specific prior written - permission. - - THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS - "AS IS" AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, - THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR - PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT OWNER OR CONTRIBUTORS - BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, - OR CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT - OF SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR PROFITS; - OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, - WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE - OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF - ADVISED OF THE POSSIBILITY OF SUCH DAMAGE. - - =========================================================================*/ - -#ifdef _MSC_VER -# pragma warning (disable : 4018) -#endif - -#include -#include -#include -#include -#include -#include -#include -#include - -#include "vtkViewColorImage2D.h" -#include "vtkInteractorStyleImage2D.h" - - -#include "vtkViewColorImage2DCommand.h" -#include "vtkInteractorStyleImage2D.h" - -#include -#include - - -vtkViewColorImage2DCommand::vtkViewColorImage2DCommand() : Viewer( 0 ) -{} - -void -vtkViewColorImage2DCommand::Execute( vtkObject* caller, - unsigned long event, - void* callData) -{ - vtkInteractorStyleImage2D *isi = - static_cast(caller); - - if (!isi || !this->Viewer || !this->Viewer->GetInput()) - { - return; - } - - // Reset - if (event == vtkViewColorImage2DCommand::ResetViewerEvent) - { - this->Viewer->Reset(); - this->Viewer->Render(); - return; - } - - if (event == vtkCommand::KeyPressEvent) - { - vtkRenderWindowInteractor *rwi = - this->Viewer->GetRenderWindow()->GetInteractor(); - - if (rwi->GetKeyCode() == 't') - { - this->Viewer->SetViewOrientation ( - (this->Viewer->GetViewOrientation()+1)%3 ); - this->Viewer->Render(); - } - else if (rwi->GetKeyCode() == 'i') - { - this->Viewer->SetInterpolate ((this->Viewer->GetInterpolate() + 1)%2); - this->Viewer->Render(); - } - - return; - } - - if (event == vtkViewColorImage2DCommand::EndSliceMoveEvent) - { - int step = isi->GetSliceStep(); - this->Viewer->SetSlice (this->Viewer->GetSlice()+step); - this->Viewer->Render(); - } - - if( event == vtkViewColorImage2DCommand::ZoomEvent ) - { - this->Zooming(); - } - - if( event == vtkViewColorImage2DCommand::PanEvent ) - { - this->Panning(); - } - - // Move - // Position Value requested - if (event == vtkViewColorImage2DCommand::InteractionEvent) - { - PrintInformation(); - } - - // Position requested - if (event == vtkViewColorImage2DCommand::RequestedPositionEvent) - { - double* position = this->Viewer->GetWorldCoordinatesFromDisplayPosition ( - isi->GetRequestedPosition ()); - this->Viewer->SetWorldCoordinates(position); - this->Viewer->Render(); - } -} - -void vtkViewColorImage2DCommand::PrintInformation() -{ - vtkRenderWindowInteractor *rwi = - this->Viewer->GetRenderWindow()->GetInteractor(); - - double* pos = this->Viewer->GetWorldCoordinatesFromDisplayPosition ( - rwi->GetLastEventPosition ()); - - int* idx = this->Viewer->GetImageCoordinatesFromWorldCoordinates( pos ); - - int dims[3]; - this->Viewer->GetInput()->GetDimensions( dims ); - - double spacing[3]; - this->Viewer->GetInput()->GetSpacing( spacing ); - - std::ostringstream os; - ///TODO dims and spacing must be computed from the orientation of the - /// image. - os <<"Size: " <<"[ " <Viewer->GetSlice() <<" / " - <Viewer->GetSliceMax() - this->Viewer->GetSliceMin() <Viewer->GetCornerAnnotation()->SetText (2, os.str().c_str()); - - std::ostringstream os2; - os2 <<"Location: " <<"[ " <Viewer->GetValueAtPosition (pos); - this->Viewer->GetCornerAnnotation()->SetText (3, os2.str().c_str()); - this->Viewer->Render(); -} - - -void vtkViewColorImage2DCommand::Zooming( ) -{ - vtkRenderWindowInteractor *rwi = - this->Viewer->GetRenderWindow()->GetInteractor(); - - rwi->FindPokedRenderer( rwi->GetEventPosition()[0], - rwi->GetEventPosition()[1]); - - vtkRenderer* ren = this->Viewer->GetRenderer(); - - double *center = ren->GetCenter(); - int dy = rwi->GetEventPosition()[1] - rwi->GetLastEventPosition()[1]; - - double factor = static_cast(dy) / static_cast( center[1] ); - - double z = 1.; - z *= pow((double)1.1, factor); - - this->Viewer->SetZoom( z ); -} - - -void vtkViewColorImage2DCommand::Panning( ) -{ - vtkRenderWindowInteractor *rwi = - this->Viewer->GetRenderWindow()->GetInteractor(); - - double ViewFocus[4]; - double NewPickPoint[4]; - - // Calculate the focal depth since we'll be using it a lot - vtkRenderer* ren = this->Viewer->GetRenderer(); - vtkCamera* camera = ren->GetActiveCamera(); - camera->GetFocalPoint(ViewFocus); - - vtkInteractorObserver::ComputeWorldToDisplay( ren, - ViewFocus[0], ViewFocus[1], ViewFocus[2], ViewFocus); - - double focalDepth = ViewFocus[2]; - - vtkInteractorObserver::ComputeDisplayToWorld( ren, - rwi->GetEventPosition()[0], - rwi->GetEventPosition()[1], - focalDepth, - NewPickPoint ); - - // Get the current focal point and position - - camera->GetFocalPoint(ViewFocus); - - // Compute a translation vector, moving everything 1/10 - // the distance to the cursor. (Arbitrary scale factor) - - double MotionVector[3]; - MotionVector[0] = 0.01 * (ViewFocus[0] - NewPickPoint[0]); - MotionVector[1] = 0.01 * (ViewFocus[1] - NewPickPoint[1]); - MotionVector[2] = 0.01 * (ViewFocus[2] - NewPickPoint[2]); - - this->Viewer->SetCameraMotionVector( MotionVector ); -} diff --git a/branches/ColorViewer/ExternalCode/MegaVTK/vtkRenderingAddOn/vtkViewColorImage2DCommand.h b/branches/ColorViewer/ExternalCode/MegaVTK/vtkRenderingAddOn/vtkViewColorImage2DCommand.h deleted file mode 100644 index dc216567..00000000 --- a/branches/ColorViewer/ExternalCode/MegaVTK/vtkRenderingAddOn/vtkViewColorImage2DCommand.h +++ /dev/null @@ -1,124 +0,0 @@ -/*======================================================================== - Copyright (c) INRIA - ASCLEPIOS Project (http://www-sop.inria.fr/asclepios). - All rights reserved. - - Redistribution and use in source and binary forms, with or without - modification, are permitted provided that the following conditions are met: - - * Redistributions of source code must retain the above copyright notice, - this list of conditions and the following disclaimer. - - * Redistributions in binary form must reproduce the above copyright notice, - this list of conditions and the following disclaimer in the documentation - and/or other materials provided with the distribution. - - * Neither the name of INRIA or ASCLEPIOS, nor the names of any contributors - may be used to endorse or promote products derived from this software - without specific prior written permission. - - * Modified source versions must be plainly marked as such, and must not be - misrepresented as being the original software. - - THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDER AND CONTRIBUTORS ``AS IS'' - AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE - IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE - ARE DISCLAIMED. IN NO EVENT SHALL THE AUTHORS OR CONTRIBUTORS BE LIABLE FOR - ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL - DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR - SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER - CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, - OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE - OF THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE. - =========================================================================*/ - -/*========================================================================= - Modifications were made by the GoFigure Dev. Team. - while at Megason Lab, Systems biology, Harvard Medical school, 2009 - - Copyright (c) 2009, President and Fellows of Harvard College. - All rights reserved. - - Redistribution and use in source and binary forms, with or without - modification, are permitted provided that the following conditions are met: - - Redistributions of source code must retain the above copyright notice, - this list of conditions and the following disclaimer. - Redistributions in binary form must reproduce the above copyright notice, - this list of conditions and the following disclaimer in the documentation - and/or other materials provided with the distribution. - Neither the name of the President and Fellows of Harvard College - nor the names of its contributors may be used to endorse or promote - products derived from this software without specific prior written - permission. - - THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS - "AS IS" AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, - THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR - PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT OWNER OR CONTRIBUTORS - BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, - OR CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT - OF SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR PROFITS; - OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, - WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE - OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF - ADVISED OF THE POSSIBILITY OF SUCH DAMAGE. - - =========================================================================*/ - -#ifndef _vtkViewColorImage2DCommand_h_ -#define _vtkViewColorImage2DCommand_h_ - -#include - -class vtkInteractorStyleImage2D; -class vtkInteractorStyleImage; -class vtkViewColorImage2D; - -class vtkViewColorImage2DCommand : public vtkCommand -{ - public: - - static vtkViewColorImage2DCommand* New() - { return new vtkViewColorImage2DCommand; } - - //BTX - enum EventIds - { - SliceMoveEvent=(vtkCommand::UserEvent+1), - StartSliceMoveEvent, - EndSliceMoveEvent, - ZoomEvent, - PanEvent, - RequestedPositionEvent, - ResetViewerEvent - }; - //ETX - - - - // Description: - // Satisfy the superclass API for callbacks. Recall that the caller is - // the instance invoking the event; eid is the event id (see - // vtkCommand.h); and calldata is information sent when the callback - // was invoked (e.g., progress value in the vtkCommand::ProgressEvent). - virtual void Execute(vtkObject *caller,unsigned long event, - void *vtkNotUsed(callData)); - - void SetViewer(vtkViewColorImage2D *viewer) - { this->Viewer = viewer; } - - protected: - vtkViewColorImage2DCommand(); - ~vtkViewColorImage2DCommand(){}; - - void Zooming(); - void Panning(); - void PrintInformation(); - - private: - vtkViewColorImage2D* Viewer; - int InitialSlice; - -}; - -#endif diff --git a/branches/ColorViewer/ExternalCode/MegaVTK/vtkRenderingAddOn/vtkViewColorImage3D.cxx b/branches/ColorViewer/ExternalCode/MegaVTK/vtkRenderingAddOn/vtkViewColorImage3D.cxx deleted file mode 100644 index a9e068a8..00000000 --- a/branches/ColorViewer/ExternalCode/MegaVTK/vtkRenderingAddOn/vtkViewColorImage3D.cxx +++ /dev/null @@ -1,507 +0,0 @@ -/*======================================================================== - Copyright (c) INRIA - ASCLEPIOS Project (http://www-sop.inria.fr/asclepios). - All rights reserved. - - Redistribution and use in source and binary forms, with or without - modification, are permitted provided that the following conditions are met: - - * Redistributions of source code must retain the above copyright notice, - this list of conditions and the following disclaimer. - - * Redistributions in binary form must reproduce the above copyright notice, - this list of conditions and the following disclaimer in the documentation - and/or other materials provided with the distribution. - - * Neither the name of INRIA or ASCLEPIOS, nor the names of any contributors - may be used to endorse or promote products derived from this software - without specific prior written permission. - - * Modified source versions must be plainly marked as such, and must not be - misrepresented as being the original software. - - THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDER AND CONTRIBUTORS ``AS IS'' - AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE - IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE - ARE DISCLAIMED. IN NO EVENT SHALL THE AUTHORS OR CONTRIBUTORS BE LIABLE FOR - ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL - DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR - SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER - CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, - OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE - OF THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE. - =========================================================================*/ - -/*========================================================================= - Modifications were made by the GoFigure Dev. Team. - while at Megason Lab, Systems biology, Harvard Medical school, 2009 - - Copyright (c) 2009, President and Fellows of Harvard College. - All rights reserved. - - Redistribution and use in source and binary forms, with or without - modification, are permitted provided that the following conditions are met: - - Redistributions of source code must retain the above copyright notice, - this list of conditions and the following disclaimer. - Redistributions in binary form must reproduce the above copyright notice, - this list of conditions and the following disclaimer in the documentation - and/or other materials provided with the distribution. - Neither the name of the President and Fellows of Harvard College - nor the names of its contributors may be used to endorse or promote - products derived from this software without specific prior written - permission. - - THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS - "AS IS" AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, - THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR - PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT OWNER OR CONTRIBUTORS - BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, - OR CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT - OF SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR PROFITS; - OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, - WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE - OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF - ADVISED OF THE POSSIBILITY OF SUCH DAMAGE. - - =========================================================================*/ - -#include "vtkViewColorImage3D.h" - -#include "vtkCamera.h" -#include "vtkCommand.h" -#include "vtkImageActor.h" -#include "vtkImageData.h" -#include "vtkInteractorStyleImage.h" -#include "vtkObjectFactory.h" -#include "vtkRenderWindow.h" -#include "vtkRenderWindowInteractor.h" -#include "vtkRenderer.h" -#include "vtkMatrix4x4.h" -#include "vtkTransform.h" -#include "vtkOrientationAnnotation.h" -#include "vtkCornerAnnotation.h" -#include "vtkTextProperty.h" -#include "vtkMath.h" -#include "vtkPlane.h" -#include "vtkCutter.h" -#include "vtkActor.h" -#include "vtkPolyDataMapper.h" -#include "vtkProp3DCollection.h" -#include "vtkDataSetCollection.h" -#include "vtkPoints.h" -#include "vtkIdList.h" -#include "vtkOutlineSource.h" -#include "vtkMatrixToLinearTransform.h" -#include "vtkPointData.h" -#include "vtkUnsignedCharArray.h" -#include "vtkIntArray.h" -#include "vtkImageAccumulate.h" - - -#include -#include -#include -#include -#include -#include -#include -#include -#include -#include -#include -#include -#include -#include -#include -#include -#include -#include -#include -#include -#include -#include -#include -#include -#include -#include -#include "vtkRenderWindow.h" -#include -#include -#include -#include -#include -#include -#include -#include -#include -#include -#include -#include - -#include -#include - -vtkCxxRevisionMacro(vtkViewColorImage3D, "$Revision: 2 $"); -vtkStandardNewMacro(vtkViewColorImage3D); - - -//---------------------------------------------------------------------------- -class ColorImageActorCallback : public vtkCommand -{ -public: - static ColorImageActorCallback *New() { return new ColorImageActorCallback; } - - void Execute(vtkObject *caller, - unsigned long event, - void *vtkNotUsed(callData)) - { - if (!this->Actor) - return; - vtkImageActor* imagecaller = vtkImageActor::SafeDownCast (caller); - if (imagecaller && (event == vtkCommand::ModifiedEvent)) - { - this->Actor->SetInput(imagecaller->GetInput()); - this->Actor->SetInterpolate(imagecaller->GetInterpolate()); - this->Actor->SetDisplayExtent (imagecaller->GetDisplayExtent()); - } - } - vtkImageActor* Actor; - -}; - - - -//---------------------------------------------------------------------------- -vtkViewColorImage3D::vtkViewColorImage3D() -{ - this->VolumeProperty = vtkVolumeProperty::New(); - this->VolumeActor = vtkVolume::New(); - this->BoxWidget = vtkOrientedBoxWidget::New(); - this->Callback = vtkImage3DCroppingBoxCallback::New(); - this->PlaneWidget = vtkPlaneWidget::New(); - this->VolumeMapper3D = vtkVolumeTextureMapper3D::New(); - - this->Phantom.push_back( vtkImageActor::New() ); - this->Phantom.push_back( vtkImageActor::New() ); - this->Phantom.push_back( vtkImageActor::New() ); - - this->PhantomCallback.push_back( ColorImageActorCallback::New() ); - this->PhantomCallback.push_back( ColorImageActorCallback::New() ); - this->PhantomCallback.push_back( ColorImageActorCallback::New() ); - - this->BoundsActor.push_back( vtkActor::New() ); - this->BoundsActor.push_back( vtkActor::New() ); - this->BoundsActor.push_back( vtkActor::New() ); - - this->SetupVolumeRendering(); - this->SetupWidgets(); -} - -//---------------------------------------------------------------------------- -vtkViewColorImage3D::~vtkViewColorImage3D() -{ - // delete all vtk objetcts: - this->VolumeMapper3D->Delete(); - this->VolumeProperty->Delete(); - this->VolumeActor->Delete(); - this->BoxWidget->Delete(); - this->Callback->Delete(); - this->Cube->Delete(); - this->Marker->Delete(); - this->PlaneWidget->Delete(); - this->Phantom[0]->Delete(); - this->Phantom[1]->Delete(); - this->Phantom[2]->Delete(); - this->PhantomCallback[0]->Delete(); - this->PhantomCallback[1]->Delete(); - this->PhantomCallback[2]->Delete(); - this->BoundsActor[0]->Delete(); - this->BoundsActor[1]->Delete(); - this->BoundsActor[2]->Delete(); -} - - -//---------------------------------------------------------------------------- -void vtkViewColorImage3D::SetupVolumeRendering() -{ - vtkVolumeTextureMapper3D* texturemapper = - vtkVolumeTextureMapper3D::SafeDownCast ( this->VolumeActor->GetMapper() ); - if (texturemapper) - { - texturemapper->SetSampleDistance(0.5); - texturemapper->SetPreferredMethodToNVidia(); - } - - this->VolumeMapper3D->CroppingOn(); - this->VolumeMapper3D->SetCroppingRegionFlagsToSubVolume(); - this->VolumeMapper3D->SetCroppingRegionFlags (0x7ffdfff); - - // set up the vtk pipeline: volume rendering - this->VolumeActor->SetMapper ( this->VolumeMapper3D ); - this->VolumeActor->PickableOff(); - this->VolumeActor->DragableOff(); - this->VolumeActor->SetVisibility (0); - - // set up the boxwidget/ callback - this->Callback->SetVolumeMapper ( this->VolumeMapper3D ); - - this->Renderer->AddViewProp (this->VolumeActor); - -} - - -//---------------------------------------------------------------------------- -void vtkViewColorImage3D::SetupWidgets() -{ - - // Create an annotated cube actor (directions) - this->Cube = vtkAnnotatedCubeActor::New(); - this->Cube->SetXPlusFaceText ("L"); - this->Cube->SetXMinusFaceText ("R"); - this->Cube->SetYPlusFaceText ("P"); - this->Cube->SetYMinusFaceText ("A"); - this->Cube->SetZPlusFaceText ("D"); - this->Cube->SetZMinusFaceText ("V"); - this->Cube->SetZFaceTextRotation (90); - this->Cube->SetFaceTextScale (0.65); - this->Cube->GetCubeProperty()->SetColor (0.5, 1, 1); - this->Cube->GetTextEdgesProperty()->SetLineWidth (1); - this->Cube->GetTextEdgesProperty()->SetDiffuse (0); - this->Cube->GetTextEdgesProperty()->SetAmbient (1); - this->Cube->GetTextEdgesProperty()->SetColor (0.18, 0.28, 0.23); - -#if VTK_MAJOR_VERSION==5 && VTK_MINOR_VERSION>=1 - this->Cube->SetTextEdgesVisibility (1); - this->Cube->SetCubeVisibility(1); - this->Cube->SetFaceTextVisibility(1); -#else - this->Cube->TextEdgesOn (); - this->Cube->FaceTextOn(); - this->Cube->CubeOn(); -#endif - - this->Cube->GetXPlusFaceProperty()->SetColor (1, 0, 0); - this->Cube->GetXPlusFaceProperty()->SetInterpolationToFlat(); - this->Cube->GetXMinusFaceProperty()->SetColor (1, 0, 0); - this->Cube->GetXMinusFaceProperty()->SetInterpolationToFlat(); - this->Cube->GetYPlusFaceProperty()->SetColor (0, 1, 0); - this->Cube->GetYPlusFaceProperty()->SetInterpolationToFlat(); - this->Cube->GetYMinusFaceProperty()->SetColor (0, 1, 0); - this->Cube->GetYMinusFaceProperty()->SetInterpolationToFlat(); - this->Cube->GetZPlusFaceProperty()->SetColor (0, 0, 1); - this->Cube->GetZPlusFaceProperty()->SetInterpolationToFlat(); - this->Cube->GetZMinusFaceProperty()->SetColor (0, 0, 1); - this->Cube->GetZMinusFaceProperty()->SetInterpolationToFlat(); - - this->Marker = vtkOrientationMarkerWidget::New(); - this->Marker->SetOutlineColor (0.93, 0.57, 0.13); - this->Marker->SetOrientationMarker (this->Cube); - this->Marker->SetViewport (0.0, 0.05, 0.15, 0.15); - - this->BoxWidget->RotationEnabledOff(); - this->BoxWidget->SetPlaceFactor (0.5); - this->BoxWidget->SetKeyPressActivationValue ('b'); - this->BoxWidget->AddObserver (vtkCommand::InteractionEvent, this->Callback); - - this->PlaneWidget->SetKeyPressActivationValue ('p'); - this->PlaneWidget->NormalToZAxisOn(); - -} - -//---------------------------------------------------------------------------- -void vtkViewColorImage3D::Render() -{ - - if (this->FirstRender) - { - // Initialize the size if not set yet - - vtkImageData *input = this->GetInput(); - if (this->RenderWindow->GetSize()[0] == 0 && input) - { - if (this->Renderer) - { - this->Renderer->ResetCamera(); - } - this->FirstRender = 0; - } - } - if (this->GetInput()) - { - this->RenderWindow->Render(); - } -} - - -void vtkViewColorImage3D::Add2DPhantom(const unsigned int& i, - vtkImageActor* input, - vtkPolyData* in_bounds ) -{ - if( i >= 3 ) - return; - - vtkRenderer* ren = this->GetRenderer(); - if( ren ) - { - this->Phantom[i]->SetInput (input->GetInput()); - this->Phantom[i]->SetDisplayExtent (input->GetDisplayExtent()); - this->Phantom[i]->SetUserMatrix (input->GetUserMatrix()); - this->PhantomCallback[i]->Actor = this->Phantom[i]; - input->AddObserver (vtkCommand::ModifiedEvent, this->PhantomCallback[i]); - ren->AddActor (this->Phantom[i]); - - /** - IMPORTANT NOTE - - Adding a 2D actor in the 3D scene should be as simple as the next line - instead of the code above... - - Unfortunately it does not seem to work properly. But this is something - we should investigate in because it would be much simpler - */ - // this->GetRenderer()->AddActor (input); - - if( in_bounds ) - { - vtkPolyDataMapper* bounds_mapper = vtkPolyDataMapper::New(); - bounds_mapper->SetInput( in_bounds ); - - this->BoundsActor[i]->SetMapper( bounds_mapper ); - this->BoundsActor[i]->GetProperty()->SetRepresentationToWireframe(); - this->BoundsActor[i]->GetProperty()->SetLineWidth( 2. ); - - ren->AddActor( this->BoundsActor[i] ); - bounds_mapper->Delete(); - } - - } - -} - -//---------------------------------------------------------------------------- -void vtkViewColorImage3D::InstallPipeline() -{ - if (this->RenderWindow && this->Renderer) - { - this->RenderWindow->AddRenderer(this->Renderer); - } - - if (this->Interactor) - { - - // init the interactor style: - vtkInteractorStyleSwitch* interactorStyle = vtkInteractorStyleSwitch::New(); - interactorStyle->SetCurrentStyleToTrackballCamera(); - this->Interactor->SetInteractorStyle (interactorStyle); - this->BoxWidget->SetInteractor ( this->Interactor ); - this->PlaneWidget->SetInteractor ( this->Interactor ); - this->Marker->SetInteractor ( this->Interactor ); - interactorStyle->Delete(); - this->Interactor->SetRenderWindow(this->RenderWindow); - - this->Marker->On(); - this->Marker->InteractiveOff (); - - } - -} - - -//---------------------------------------------------------------------------- -void vtkViewColorImage3D::SetInput(vtkImageData* image) -{ - this->Superclass::SetInput (image); - - if( !image ) - { - return; - } - - int* size = image->GetDimensions(); - - if ( (size[0] < 2) || - (size[1] < 2) || - (size[2] < 2) ) - { - vtkWarningMacro ( <<"Cannot do volume rendering for a single slice, skipping"<VolumeMapper3D->SetInput ( this->GetInput() ); - - this->SetupTextureMapper(); - - this->BoxWidget->SetInput (this->GetInput()); - this->BoxWidget->PlaceWidget(); - - this->PlaneWidget->SetInput (this->GetInput()); - this->PlaneWidget->PlaceWidget(); - - // line to be removed: the box has to be called externally - this->BoxWidget->On(); - - this->VolumeActor->SetVisibility (1); -} - - - -//---------------------------------------------------------------------------- -void vtkViewColorImage3D::SetOrientationMatrix (vtkMatrix4x4* matrix) -{ - this->Superclass::SetOrientationMatrix (matrix); - - this->VolumeActor->SetUserMatrix (matrix); - this->BoxWidget->SetOrientationMatrix (matrix); -// this->PlaneWidget->SetTransform (transform); -} - - - -//---------------------------------------------------------------------------- -void vtkViewColorImage3D::SetupTextureMapper() -{ - - if (!this->GetInput()) - return; - - vtkVolumeTextureMapper3D* mapper3D = - vtkVolumeTextureMapper3D::SafeDownCast( this->VolumeActor->GetMapper() ); - - if( mapper3D && !this->GetRenderWindow()->GetNeverRendered() ) - { - if( !mapper3D->IsRenderSupported ( this->VolumeProperty ) ) - { - //try the ATI fragment program implementation - mapper3D->SetPreferredMethodToFragmentProgram(); - if ( !mapper3D->IsRenderSupported ( this->VolumeProperty ) ) - { - vtkWarningMacro ( - <<"Warning: 3D Texture volume rendering is not supported by your" - <<" hardware, I switch to 2D Texture rendering."<CroppingOn(); - newMapper->SetCroppingRegionFlags (0x7ffdfff); - - - double* range = this->GetInput()->GetScalarRange(); - double shift = 0 - range[0]; - double scale = 65535.0/(range[1] - range[0]); - - vtkImageShiftScale* scaler = vtkImageShiftScale::New(); - scaler->SetInput (this->GetInput()); - scaler->SetShift (shift); - scaler->SetScale (scale); - scaler->SetOutputScalarTypeToUnsignedShort(); - scaler->Update(); - newMapper->SetInput ( scaler->GetOutput() ); - scaler->Delete(); - this->Callback->SetVolumeMapper (newMapper); - - mapper3D->Delete(); - this->VolumeMapper3D = newMapper; - this->VolumeActor->SetMapper ( this->VolumeMapper3D ); - } - } - } -} diff --git a/branches/ColorViewer/ExternalCode/MegaVTK/vtkRenderingAddOn/vtkViewColorImage3D.h b/branches/ColorViewer/ExternalCode/MegaVTK/vtkRenderingAddOn/vtkViewColorImage3D.h deleted file mode 100644 index 66971928..00000000 --- a/branches/ColorViewer/ExternalCode/MegaVTK/vtkRenderingAddOn/vtkViewColorImage3D.h +++ /dev/null @@ -1,300 +0,0 @@ -/*======================================================================== - Copyright (c) INRIA - ASCLEPIOS Project (http://www-sop.inria.fr/asclepios). - All rights reserved. - - Redistribution and use in source and binary forms, with or without - modification, are permitted provided that the following conditions are met: - - * Redistributions of source code must retain the above copyright notice, - this list of conditions and the following disclaimer. - - * Redistributions in binary form must reproduce the above copyright notice, - this list of conditions and the following disclaimer in the documentation - and/or other materials provided with the distribution. - - * Neither the name of INRIA or ASCLEPIOS, nor the names of any contributors - may be used to endorse or promote products derived from this software - without specific prior written permission. - - * Modified source versions must be plainly marked as such, and must not be - misrepresented as being the original software. - - THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDER AND CONTRIBUTORS ``AS IS'' - AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE - IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE - ARE DISCLAIMED. IN NO EVENT SHALL THE AUTHORS OR CONTRIBUTORS BE LIABLE FOR - ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL - DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR - SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER - CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, - OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE - OF THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE. - =========================================================================*/ - -/*========================================================================= - Modifications were made by the GoFigure Dev. Team. - while at Megason Lab, Systems biology, Harvard Medical school, 2009 - - Copyright (c) 2009, President and Fellows of Harvard College. - All rights reserved. - - Redistribution and use in source and binary forms, with or without - modification, are permitted provided that the following conditions are met: - - Redistributions of source code must retain the above copyright notice, - this list of conditions and the following disclaimer. - Redistributions in binary form must reproduce the above copyright notice, - this list of conditions and the following disclaimer in the documentation - and/or other materials provided with the distribution. - Neither the name of the President and Fellows of Harvard College - nor the names of its contributors may be used to endorse or promote - products derived from this software without specific prior written - permission. - - THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS - "AS IS" AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, - THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR - PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT OWNER OR CONTRIBUTORS - BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, - OR CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT - OF SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR PROFITS; - OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, - WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE - OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF - ADVISED OF THE POSSIBILITY OF SUCH DAMAGE. - - =========================================================================*/ - -#ifndef _vtkViewColorImage3D_h_ -#define _vtkViewColorImage3D_h_ - -#include "vtkViewColorImage.h" - -#include -#include -#include -#include -#include -#include -#include "vtkImage3DCroppingBoxCallback.h" -#include - -#include - -class vtkVolumeTextureMapper3D; -class vtkVolumeMapper; -class vtkPiecewiseFunction; -class vtkVolume; -class vtkImageActor; -class vtkAxes; -class vtkDataSet3DCroppingPlaneCallback; -class vtkTubeFilter; -class vtkAnnotatedCubeActor; -class vtkOrientationMarkerWidget; -class vtkAxesActor; -class vtkImageBlend; -class vtkViewColorImage2D; - - -/** - -*/ - -class ColorImageActorCallback; - -class vtkViewColorImage3D : public vtkViewColorImage -{ - - public: - - static vtkViewColorImage3D* New(); - vtkTypeRevisionMacro(vtkViewColorImage3D, vtkViewColorImage); - - // Description: - // Render the resulting image. - virtual void Render(void); - - /** - Add a dataset to the view (has to be subclass of vtkPointSet). - The dataset will be cut through the implicit slice plane - (GetImplicitSlicePlane()). - - This results in a loss of dimensionality, i.e. tetrahedron will be displayed - as triangles, triangles as lines, lines as points. - A vtkProperty of the dataset can be specified. - */ - virtual void AddDataSet (vtkDataSet* dataset, - vtkProperty* property = NULL, - const bool& intersection = true ) {}; - /** - Set/Get the current slice to display (depending on the orientation - this can be in X, Y or Z). - */ - virtual void SetSlice(int s){}; - virtual void SetSliceOrientation(int orientation){}; - // Description: - // Update the display extent manually so that the proper slice for the - // given orientation is displayed. It will also try to set a - // reasonable camera clipping range. - // This method is called automatically when the Input is changed, but - // most of the time the input of this class is likely to remain the same, - // i.e. connected to the output of a filter, or an image reader. When the - // input of this filter or reader itself is changed, an error message might - // be displayed since the current display extent is probably outside - // the new whole extent. Calling this method will ensure that the display - // extent is reset properly. - virtual void UpdateDisplayExtent(){}; - - virtual void Add2DPhantom( - const unsigned int& i, - vtkImageActor* input, - vtkPolyData* in_bounds = NULL ); - - virtual void SetInput (vtkImageData* input); - - virtual void SetOrientationMatrix (vtkMatrix4x4* matrix); - - void SetVolumeRenderingOff() - { - this->VolumeActor->SetVisibility (false); - this->BoxWidget->Off(); - } - - void SetVolumeRenderingOn() - { - this->VolumeActor->SetVisibility(true); - } - - void SetTriPlanarRenderingOn() - { - this->VolumeActor->SetVisibility(false); - for( int i = 0; i < 3; i++ ) - { - this->Phantom[i]->SetVisibility(true); - this->BoundsActor[i]->SetVisibility(true); - } - } - - void SetTriPlanarRenderingOff() - { - this->VolumeActor->SetVisibility(true); - for( int i = 0; i < 3; i++ ) - { - this->Phantom[i]->SetVisibility(false); - this->BoundsActor[i]->SetVisibility(false); - } - } - - void SetVolumeMapperToTexture (void) - { - this->VolumeActor->SetMapper ( this->VolumeMapper3D ); - this->Callback->SetVolumeMapper ( this->VolumeMapper3D ); - } - - void SetVolumeMapperToRayCast (void) - { - } - - void SetVolumeRayCastFunctionToComposite (void) - { - } - - - void SetVolumeRayCastFunctionToMIP (void) - { - } - - - void SetVolumeRayCastFunctionToIsosurface (void) - { - } - - /** Set the box widget visibility */ - void SetBoxWidgetVisibility (int a) - { - if (this->Interactor) - this->BoxWidget->SetEnabled (a); - } - bool GetBoxWidgetVisibility (void) - { - return ( this->BoxWidget->GetEnabled() == 1 ); - } - vtkBooleanMacro (BoxWidgetVisibility, int); - - /** Set the plane widget on */ - void SetPlaneWidgetVisibility (int a) - { - if (this->Interactor) - this->PlaneWidget->SetEnabled (a); - } - bool GetPlaneWidgetVisibility (void) - { - return ( this->PlaneWidget->GetEnabled() == 1 ); - } - vtkBooleanMacro (PlaneWidgetVisibility, int); - - /** Set the cube widget on */ - void SetCubeVisibility (int a) - { - if (this->Interactor) - this->Marker->SetEnabled (a); - } - bool GetCubeVisibility (void) - { - return ( this->Marker->GetEnabled() == 1 ); - } - vtkBooleanMacro (CubeVisibility, int); - - void SetShade (int a) - { - this->VolumeProperty->SetShade (a); - } - bool GetShade (void) - { - return ( this->VolumeProperty->GetShade() == 1 ); - } - vtkBooleanMacro (Shade, int); - - /** Get volume actor */ - vtkGetObjectMacro (VolumeActor, vtkVolume); - vtkGetObjectMacro (PlaneWidget, vtkPlaneWidget); - vtkGetObjectMacro (VolumeProperty, vtkVolumeProperty); - vtkGetObjectMacro (BoxWidget, vtkOrientedBoxWidget); - - protected: - - vtkViewColorImage3D(); - ~vtkViewColorImage3D(); - - // Description: - virtual void InstallPipeline(); - virtual void UpdateOrientation(){} - - virtual void SetupVolumeRendering(); - virtual void SetupWidgets(); - virtual void SetupTextureMapper(); - - // texture mapper in 3D - vtkVolumeMapper* VolumeMapper3D; - // volume property - vtkVolumeProperty* VolumeProperty; - // volume actor - vtkVolume* VolumeActor; - // image 3D cropping box callback - vtkImage3DCroppingBoxCallback* Callback; - - std::vector< vtkImageActor* > Phantom; - std::vector< ColorImageActorCallback* > PhantomCallback; - std::vector< vtkActor* > BoundsActor; - - // box widget - vtkOrientedBoxWidget* BoxWidget; - // vtkPlane widget - vtkPlaneWidget* PlaneWidget; - // annotated cube actor - vtkAnnotatedCubeActor* Cube; - vtkOrientationMarkerWidget* Marker; - -}; - -#endif /* _vtkViewColorImage3D_h_ */ diff --git a/branches/ColorViewer/ExternalCode/MegaVTK/vtkRenderingAddOn/vtkViewImage.cxx b/branches/ColorViewer/ExternalCode/MegaVTK/vtkRenderingAddOn/vtkViewImage.cxx deleted file mode 100644 index f2f3f66f..00000000 --- a/branches/ColorViewer/ExternalCode/MegaVTK/vtkRenderingAddOn/vtkViewImage.cxx +++ /dev/null @@ -1,383 +0,0 @@ -/*======================================================================== - Copyright (c) INRIA - ASCLEPIOS Project (http://www-sop.inria.fr/asclepios). - All rights reserved. - - Redistribution and use in source and binary forms, with or without - modification, are permitted provided that the following conditions are met: - - * Redistributions of source code must retain the above copyright notice, - this list of conditions and the following disclaimer. - - * Redistributions in binary form must reproduce the above copyright notice, - this list of conditions and the following disclaimer in the documentation - and/or other materials provided with the distribution. - - * Neither the name of INRIA or ASCLEPIOS, nor the names of any contributors - may be used to endorse or promote products derived from this software - without specific prior written permission. - - * Modified source versions must be plainly marked as such, and must not be - misrepresented as being the original software. - - THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDER AND CONTRIBUTORS ``AS IS'' - AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE - IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE - ARE DISCLAIMED. IN NO EVENT SHALL THE AUTHORS OR CONTRIBUTORS BE LIABLE FOR - ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL - DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR - SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER - CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, - OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE - OF THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE. - =========================================================================*/ - -/*========================================================================= - Modifications were made by the GoFigure Dev. Team. - while at Megason Lab, Systems biology, Harvard Medical school, 2009 - - Copyright (c) 2009, President and Fellows of Harvard College. - All rights reserved. - - Redistribution and use in source and binary forms, with or without - modification, are permitted provided that the following conditions are met: - - Redistributions of source code must retain the above copyright notice, - this list of conditions and the following disclaimer. - Redistributions in binary form must reproduce the above copyright notice, - this list of conditions and the following disclaimer in the documentation - and/or other materials provided with the distribution. - Neither the name of the President and Fellows of Harvard College - nor the names of its contributors may be used to endorse or promote - products derived from this software without specific prior written - permission. - - THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS - "AS IS" AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, - THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR - PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT OWNER OR CONTRIBUTORS - BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, - OR CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT - OF SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR PROFITS; - OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, - WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE - OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF - ADVISED OF THE POSSIBILITY OF SUCH DAMAGE. - - =========================================================================*/ - -#include "vtkViewImage.h" - -#include "vtkCamera.h" -#include "vtkCommand.h" -#include "vtkImageActor.h" -#include "vtkImageData.h" -#include "vtkImageMapToWindowLevelColors.h" -#include "vtkInteractorStyleImage.h" -#include "vtkObjectFactory.h" -#include "vtkRenderWindow.h" -#include "vtkRenderWindowInteractor.h" -#include "vtkRenderer.h" -#include "vtkMatrix4x4.h" -#include "vtkScalarBarActor.h" -#include "vtkOrientationAnnotation.h" -#include "vtkCornerAnnotation.h" -#include "vtkTextProperty.h" -#include "vtkLookupTable.h" -#include "vtkMath.h" -#include "vtkPlane.h" -#include "vtkCutter.h" -#include "vtkActor.h" -#include "vtkPolyDataMapper.h" -#include "vtkProp3DCollection.h" -#include "vtkDataSetCollection.h" -#include "vtkPoints.h" -#include "vtkIdList.h" -#include "vtkOutlineSource.h" -#include "vtkMatrixToLinearTransform.h" -#include "vtkPointData.h" -#include "vtkUnsignedCharArray.h" -#include "vtkIntArray.h" -#include "vtkImageAccumulate.h" -#include "vtkInteractorStyleImage.h" - -#include -#include - -vtkCxxRevisionMacro(vtkViewImage, "$Revision: 2 $"); -vtkStandardNewMacro(vtkViewImage); - -//---------------------------------------------------------------------------- -vtkViewImage::vtkViewImage() -{ - this->OrientationMatrix = vtkMatrix4x4::New(); - this->OrientationAnnotation = vtkOrientationAnnotation::New(); - this->CornerAnnotation = vtkCornerAnnotation::New(); - this->TextProperty = vtkTextProperty::New(); - this->LookupTable = vtkLookupTable::New(); - this->ScalarBarActor = vtkScalarBarActor::New(); - this->Prop3DCollection = vtkProp3DCollection::New(); - this->DataSetCollection = vtkDataSetCollection::New(); - this->OrientationTransform = vtkMatrixToLinearTransform::New(); - - this->MaskImage = 0; - - this->OrientationMatrix->Identity(); - this->CornerAnnotation->SetNonlinearFontScaleFactor (0.22); - this->CornerAnnotation->SetTextProperty ( this->TextProperty ); - this->OrientationAnnotation->SetNonlinearFontScaleFactor (0.25); - this->OrientationAnnotation->SetTextProperty ( this->TextProperty ); - this->ScalarBarActor->GetLabelTextProperty()->BoldOff(); - this->ScalarBarActor->GetLabelTextProperty()->ItalicOff(); - this->ScalarBarActor->SetNumberOfLabels (3); - this->ScalarBarActor->SetWidth (0.1); - this->ScalarBarActor->SetHeight (0.5); - this->ScalarBarActor->SetPosition (0.9,0.3); - this->LookupTable->SetTableRange (0, 1); - this->LookupTable->SetSaturationRange (0, 0); - this->LookupTable->SetHueRange (0, 0); - this->LookupTable->SetValueRange (0, 1); - this->LookupTable->Build(); - - this->ShowAnnotations = true; - this->ShowScalarBar = false; - - this->OrientationTransform->SetInput (this->OrientationMatrix); - - //this->WindowLevel->SetLookupTable (this->LookupTable); - this->ScalarBarActor->SetLookupTable (this->LookupTable); - - this->Renderer->AddViewProp ( this->CornerAnnotation ); - this->Renderer->AddViewProp ( this->OrientationAnnotation ); - - this->Renderer->AddViewProp ( this->ScalarBarActor ); -} - -//---------------------------------------------------------------------------- -vtkViewImage::~vtkViewImage() -{ - this->OrientationMatrix->Delete(); - this->OrientationAnnotation->Delete(); - this->CornerAnnotation->Delete(); - this->LookupTable->Delete(); - this->ScalarBarActor->Delete(); - this->Prop3DCollection->Delete(); - this->DataSetCollection->Delete(); - this->OrientationTransform->Delete(); - this->TextProperty->Delete(); -} - - -//---------------------------------------------------------------------------- -void vtkViewImage::SetOrientationMatrix (vtkMatrix4x4* matrix) -{ - vtkSetObjectMacro2Body (OrientationMatrix, vtkMatrix4x4, matrix); - this->ImageActor->SetUserMatrix (this->OrientationMatrix); - this->OrientationTransform->SetInput (this->OrientationMatrix); - - this->UpdateOrientation(); -} - -//---------------------------------------------------------------------------- -void vtkViewImage::SetLookupTable (vtkLookupTable* lookuptable) -{ - vtkSetObjectMacro2Body (LookupTable, vtkLookupTable, lookuptable); - this->WindowLevel->SetLookupTable (this->LookupTable); - this->ScalarBarActor->SetLookupTable (this->LookupTable); -} - -//---------------------------------------------------------------------------- -void vtkViewImage::SetTextProperty (vtkTextProperty* textproperty) -{ - vtkSetObjectMacro2Body (TextProperty, vtkTextProperty, textproperty); - this->CornerAnnotation->SetTextProperty (this->TextProperty); -} - -//---------------------------------------------------------------------------- -void vtkViewImage::SetColorWindow(double s) -{ - if (s<0) - s = 1.0; - - this->Superclass::SetColorWindow(s); - double v_min = this->GetColorLevel() - 0.5*s; - double v_max = this->GetColorLevel() + 0.5*s; - this->GetLookupTable()->SetRange (v_min, v_max); - -} - -//---------------------------------------------------------------------------- -void vtkViewImage::SetColorLevel(double s) -{ - this->Superclass::SetColorLevel(s); - double v_min = s - 0.5*this->GetColorWindow(); - double v_max = s + 0.5*this->GetColorWindow(); - this->GetLookupTable()->SetRange (v_min, v_max); - -} - - -//---------------------------------------------------------------------------- -double vtkViewImage::GetValueAtPosition(double worldcoordinates[3], - int component ) -{ - if (!this->GetInput()) - return 0.0; - - int* indices = this->GetImageCoordinatesFromWorldCoordinates (worldcoordinates); - int* extent = this->GetInput()->GetWholeExtent(); - if ( (indices[0] < extent[0]) || (indices[0] > extent[1]) || - (indices[1] < extent[2]) || (indices[1] > extent[3]) || - (indices[2] < extent[4]) || (indices[2] > extent[5]) ) - return 0; - else - return this->GetInput()->GetScalarComponentAsDouble (indices[0], indices[1], - indices[2], component); -} - - -//---------------------------------------------------------------------------- -bool vtkViewImage::RemoveDataSet (vtkDataSet* dataset) -{ - unsigned int index = this->DataSetCollection->IsItemPresent (dataset); - if (!index) - return false; - this->Renderer->RemoveViewProp ( - vtkProp::SafeDownCast (this->Prop3DCollection->GetItemAsObject (index))); - this->DataSetCollection->RemoveItem (index); - this->Prop3DCollection->RemoveItem (index); - - return true; -} - -//---------------------------------------------------------------------------- -double* vtkViewImage::GetWorldCoordinatesFromImageCoordinates(int indices[3]) -{ - if (!this->GetInput()) - { - double* nullpos = new double[3]; - nullpos[0] = 0; nullpos[1] = 0; nullpos[2] = 0; - return nullpos; - } - - // Get information - double* spacing = this->GetInput()->GetSpacing(); - double* origin = this->GetInput()->GetOrigin(); - - double unorientedposition[4]; - for (unsigned int i=0; i<3; i++) - unorientedposition[i] = origin[i] + spacing[i]*indices[i]; - unorientedposition[3] = 1; - - // apply orientation matrix - double* position = new double[4]; - this->GetOrientationMatrix()->MultiplyPoint (unorientedposition, position); - return position; -} - -//---------------------------------------------------------------------------- -int* vtkViewImage::GetImageCoordinatesFromWorldCoordinates(double position[3]) -{ - if (!this->GetInput()) - { - int* nullpos = new int[3]; - nullpos[0] = 0; nullpos[1] = 0; nullpos[2] = 0; - return nullpos; - } - - // Get information - double unorientedposition[4] = {position[0], position[1], position[2], 1}; - double spacing[4] = {this->GetInput()->GetSpacing()[0], - this->GetInput()->GetSpacing()[1], - this->GetInput()->GetSpacing()[2], - 0}; - double origin[4] = {this->GetInput()->GetOrigin()[0], - this->GetInput()->GetOrigin()[1], - this->GetInput ()->GetOrigin()[2], - 1}; - - // apply inverted orientation matrix to the world-coordinate position - vtkMatrix4x4* inverse = vtkMatrix4x4::New(); - vtkMatrix4x4::Invert (this->GetOrientationMatrix(), inverse); - inverse->MultiplyPoint (unorientedposition, unorientedposition); - - int* indices = new int[3]; - for (unsigned int i=0; i<3;i++) - { - if (fabs (spacing[i]) > 1e-5) - indices[i] = vtkMath::Round((unorientedposition[i]-origin[i])/spacing[i]); - else - indices[i] = 0; - } - inverse->Delete(); - - return indices; -} - -//---------------------------------------------------------------------------- -void vtkViewImage::SetBackground(double rgb[3]) -{ - if (this->Renderer) - this->Renderer->SetBackground(rgb); -} -//---------------------------------------------------------------------------- -void vtkViewImage::SetBackground(double r, double g, double b) -{ - if (this->Renderer) - this->Renderer->SetBackground(r,g,b); -} - -//---------------------------------------------------------------------------- -double* vtkViewImage::GetBackground() -{ - if (this->Renderer) - return this->Renderer->GetBackground(); - return NULL; -} - -//---------------------------------------------------------------------------- -void vtkViewImage::ResetCamera (void) -{ - if (this->Renderer) - this->Renderer->ResetCamera(); -} - -//---------------------------------------------------------------------------- -void vtkViewImage::Reset (void) -{ - this->ResetCamera(); -} - -//---------------------------------------------------------------------------- -void vtkViewImage::Enable (void) -{ - this->Interactor->Enable(); -} -//---------------------------------------------------------------------------- -void vtkViewImage::Disable (void) -{ - this->Interactor->Disable(); -} -//---------------------------------------------------------------------------- -int vtkViewImage::GetEnabled (void) -{ - return this->Interactor->GetEnabled(); -} - -//---------------------------------------------------------------------------- -void vtkViewImage::SetShowAnnotations (int val) -{ - this->ShowAnnotations = val; - this->CornerAnnotation->SetVisibility (val); - this->OrientationAnnotation->SetVisibility (val); -} -//---------------------------------------------------------------------------- -void vtkViewImage::SetShowScalarBar (int val) -{ - this->ShowScalarBar = val; - this->ScalarBarActor->SetVisibility (val); -} - -vtkRenderWindowInteractor* vtkViewImage::GetRenderWindowInteractor() -{ - return this->GetRenderWindow()->GetInteractor(); -} diff --git a/branches/ColorViewer/ExternalCode/MegaVTK/vtkRenderingAddOn/vtkViewImage.h b/branches/ColorViewer/ExternalCode/MegaVTK/vtkRenderingAddOn/vtkViewImage.h deleted file mode 100644 index bf7a32fe..00000000 --- a/branches/ColorViewer/ExternalCode/MegaVTK/vtkRenderingAddOn/vtkViewImage.h +++ /dev/null @@ -1,340 +0,0 @@ -/*======================================================================== - Copyright (c) INRIA - ASCLEPIOS Project (http://www-sop.inria.fr/asclepios). - All rights reserved. - - Redistribution and use in source and binary forms, with or without - modification, are permitted provided that the following conditions are met: - - * Redistributions of source code must retain the above copyright notice, - this list of conditions and the following disclaimer. - - * Redistributions in binary form must reproduce the above copyright notice, - this list of conditions and the following disclaimer in the documentation - and/or other materials provided with the distribution. - - * Neither the name of INRIA or ASCLEPIOS, nor the names of any contributors - may be used to endorse or promote products derived from this software - without specific prior written permission. - - * Modified source versions must be plainly marked as such, and must not be - misrepresented as being the original software. - - THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDER AND CONTRIBUTORS ``AS IS'' - AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE - IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE - ARE DISCLAIMED. IN NO EVENT SHALL THE AUTHORS OR CONTRIBUTORS BE LIABLE FOR - ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL - DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR - SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER - CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, - OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE - OF THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE. - =========================================================================*/ - -/*========================================================================= - Modifications were made by the GoFigure Dev. Team. - while at Megason Lab, Systems biology, Harvard Medical school, 2009 - - Copyright (c) 2009, President and Fellows of Harvard College. - All rights reserved. - - Redistribution and use in source and binary forms, with or without - modification, are permitted provided that the following conditions are met: - - Redistributions of source code must retain the above copyright notice, - this list of conditions and the following disclaimer. - Redistributions in binary form must reproduce the above copyright notice, - this list of conditions and the following disclaimer in the documentation - and/or other materials provided with the distribution. - Neither the name of the President and Fellows of Harvard College - nor the names of its contributors may be used to endorse or promote - products derived from this software without specific prior written - permission. - - THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS - "AS IS" AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, - THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR - PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT OWNER OR CONTRIBUTORS - BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, - OR CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT - OF SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR PROFITS; - OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, - WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE - OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF - ADVISED OF THE POSSIBILITY OF SUCH DAMAGE. - - =========================================================================*/ - -#ifndef _vtkViewImage_h_ -#define _vtkViewImage_h_ - -#include "vtkImageViewer2.h" - -/** - This macro can be useful as we frequently set - an instance this way, meaning unregistering previously set instance, - registering given instance, and call a modified event. - However this might be not the best place to define it... -*/ -//BTX -#define vtkSetObjectMacro2Body(object, type, _arg)\ - if (this->object == _arg) \ - return; \ - if (this->object) \ - { \ - this->object->UnRegister(this); \ - } \ - this->object = _arg; \ - \ - if (this->object != NULL) \ - { \ - this->object->Register(this); \ - } \ - \ - this->Modified(); \ -//ETX - -/** - This macro can be useful as we frequently set - an instance this way, meaning unregistering previously set instance, - registering given instance, and call a modified event. - However this might be not the best place to define it... -*/ -//BTX -#define vtkSetObjectMacro2(object, type) \ - virtual void Set##object (type* _arg) \ - { \ - vtkSetObjectMacro2Body (object, type, _arg);\ - } \ - -//ETX - - -class vtkMatrix4x4; -class vtkScalarBarActor; -class vtkLookupTable; -class vtkTextProperty; -class vtkCornerAnnotation; -class vtkOrientationAnnotation; -class vtkActor; -class vtkDataSet; -class vtkPolyData; -class vtkProperty; -class vtkProp3DCollection; -class vtkDataSetCollection; -class vtkMatrixToLinearTransform; - -/** - -*/ - - -class vtkViewImage : public vtkImageViewer2 -{ - - public: - - static vtkViewImage* New(); - vtkTypeRevisionMacro(vtkViewImage, vtkImageViewer2); - - /** - Get the orientation annotation. This annotation describes the orientation - of the slice plane, according to the rule - Right(R)-Left(L) Anterior(A)-Posterior(P) Inferior(I)-Superior(S) - */ - vtkGetObjectMacro (OrientationAnnotation, vtkOrientationAnnotation); - /** - Get the corner annotation. - */ - ///\todo make the corner annotation such that it follows the slice number, the - ///image scalar value at cursor, the spacing, etc - vtkGetObjectMacro (CornerAnnotation, vtkCornerAnnotation); - /** - Get the scalar bar actor. This instance follows the color window/level - of the viewer. - */ - ///\todo make this scalar bar actually follow the WindowLevel filter. It does - /// not seems to work yet - vtkGetObjectMacro (ScalarBarActor, vtkScalarBarActor); - /** - The OrientationMatrix instance (GetOrientationMatrix()) is a very important - added feature of this viewer. It describes the rotation and translation to - apply to the image bouding box (axis aligned) to the world coordinate - system. - - Rotation part is usually given by the GetDirection() method on an itk::Image - for instance. Translation usually correspond to the origin of the image - given by GetOrigin() on an itk::Image. - - CAUTION: if you provide non-zero origin to the viewer vtkImageData input - (SetInput()), then don't provide translation to the OrientationMatrix - instance, otherwise the information is redundant. - - The best behaviour is to force the origin of the vtkImageData input to zero - and provide this origin information in the OrientationMatrix. - - */ - vtkGetObjectMacro (OrientationMatrix, vtkMatrix4x4); - virtual void SetOrientationMatrix (vtkMatrix4x4* matrix); - /** - The LookupTable instance (GetLookupTable()) can be used to set a - user-defined color-table to the viewer. Default is a linear black to - white table. - */ - vtkGetObjectMacro (LookupTable, vtkLookupTable); - virtual void SetLookupTable (vtkLookupTable* lookuptable); - /** - The TextProperty instance (GetTextProperty()) describes the font and - other settings of the CornerAnnotation instance (GetCornerAnnotation()) - */ - vtkGetObjectMacro (TextProperty, vtkTextProperty); - virtual void SetTextProperty (vtkTextProperty* textproperty); - /** - The wolld is not always what we think it is ... - - Use this method to move the viewer slice such that the position - (in world coordinates) given by the arguments is contained by - the slice plane. If the given position is outside the bounds - of the image, then the slice will be as close as possible. - */ - virtual void SetWorldCoordinates (double x, double y, double z) - { - double pos[3] = {x,y,z}; - this->SetWorldCoordinates (pos); - } - virtual void SetWorldCoordinates (double pos[3]){}; - - /** - Add a dataset to the view (has to be subclass of vtkPointSet). - The dataset will be cut through the implicit slice plane - (GetImplicitSlicePlane()). - - This results in a loss of dimensionality, i.e. tetrahedron will be displayed - as triangles, triangles as lines, lines as points. - A vtkProperty of the dataset can be specified. - */ - virtual void AddDataSet (vtkDataSet* dataset, - vtkProperty* property = NULL, - const bool& intersection = true ) {}; - virtual bool RemoveDataSet (vtkDataSet* dataset); - - /** - Set/Get the current slice to display (depending on the orientation - this can be in X, Y or Z). - */ - virtual void SetSlice(int s) - { this->Superclass::SetSlice (s); }; - - /** - Convert an indices coordinate point (image coordinates) into a world - coordinate point - */ - virtual double* GetWorldCoordinatesFromImageCoordinates (int indices[3]); - /** - Convert a world coordinate point into an image indices coordinate point - */ - virtual int* GetImageCoordinatesFromWorldCoordinates (double position[3]); - /** - Get the pixel value at a given world coordinate point in space, return - zero if out of bounds. - */ - virtual double GetValueAtPosition(double worldcoordinates[3], - int component=0 ); - /** - Set the background color. Format is RGB, 0 <= R,G,B <=1 - Example: SetBackground(0.9,0.9,0.9) for grey-white. - */ - virtual void SetBackground(double rgb[3]); - virtual void SetBackground(double r, double g, double b); - virtual double* GetBackground(void); - /** - Reset the camera - */ - virtual void ResetCamera(void); - /** - Reset position - zoom - window/level to default - */ - virtual void Reset(void); - /** - Show/Hide the annotations. - */ - vtkGetMacro (ShowAnnotations, int); - /** - Show/Hide the annotations. - */ - virtual void SetShowAnnotations (int); - /** - Show/Hide the annotations. - */ - vtkBooleanMacro (ShowAnnotations, int); - /** - Enable or Disable interaction on the view. - */ - virtual void Enable (void); - /** - Enable or Disable interaction on the view. - */ - virtual void Disable (void); - /** - Enable or Disable interaction on the view. - */ - virtual int GetEnabled (void); - /** - Show/Hide the annotations. - */ - vtkGetMacro (ShowScalarBar, int); - /** - Show/Hide the annotations. - */ - virtual void SetShowScalarBar (int); - /** - Show/Hide the annotations. - */ - vtkBooleanMacro (ShowScalarBar, int); - // Description: - // Set window and level for mapping pixels to colors. - virtual void SetColorWindow(double s); - virtual void SetColorLevel(double s); - - /** - Set a mask image and its corresponding LookupTable. The mask image will - be overlapped to the current image, and the lookup table is used to assess - the color of the label: label 0 will have color given by entry 0 of the LUT, - etc. - The image has to be of type unsigned char. - */ - virtual void SetMaskImage( vtkImageData* mask, vtkLookupTable* lut ) - { - this->MaskImage = mask; - this->MaskLUT = lut; - } - vtkGetObjectMacro( MaskImage, vtkImageData ); - vtkGetObjectMacro( MaskLUT, vtkLookupTable ); - - virtual vtkRenderWindowInteractor* GetRenderWindowInteractor(); - - protected: - - vtkViewImage(); - ~vtkViewImage(); - - // Description: - vtkMatrix4x4* OrientationMatrix; - vtkCornerAnnotation* CornerAnnotation; - vtkOrientationAnnotation* OrientationAnnotation; - vtkTextProperty* TextProperty; - vtkLookupTable* LookupTable; - vtkScalarBarActor* ScalarBarActor; - vtkProp3DCollection* Prop3DCollection; - vtkDataSetCollection* DataSetCollection; - vtkMatrixToLinearTransform* OrientationTransform; - - vtkImageData* MaskImage; - vtkLookupTable* MaskLUT; - - int ShowAnnotations; - int ShowScalarBar; - -}; - -#endif /* _vtkViewImage_h_ */ diff --git a/branches/ColorViewer/ExternalCode/MegaVTK/vtkRenderingAddOn/vtkViewImage2D.cxx b/branches/ColorViewer/ExternalCode/MegaVTK/vtkRenderingAddOn/vtkViewImage2D.cxx deleted file mode 100644 index 7546a0cf..00000000 --- a/branches/ColorViewer/ExternalCode/MegaVTK/vtkRenderingAddOn/vtkViewImage2D.cxx +++ /dev/null @@ -1,891 +0,0 @@ -/*======================================================================== - Copyright (c) INRIA - ASCLEPIOS Project (http://www-sop.inria.fr/asclepios). - All rights reserved. - - Redistribution and use in source and binary forms, with or without - modification, are permitted provided that the following conditions are met: - - * Redistributions of source code must retain the above copyright notice, - this list of conditions and the following disclaimer. - - * Redistributions in binary form must reproduce the above copyright notice, - this list of conditions and the following disclaimer in the documentation - and/or other materials provided with the distribution. - - * Neither the name of INRIA or ASCLEPIOS, nor the names of any contributors - may be used to endorse or promote products derived from this software - without specific prior written permission. - - * Modified source versions must be plainly marked as such, and must not be - misrepresented as being the original software. - - THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDER AND CONTRIBUTORS ``AS IS'' - AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE - IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE - ARE DISCLAIMED. IN NO EVENT SHALL THE AUTHORS OR CONTRIBUTORS BE LIABLE FOR - ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL - DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR - SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER - CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, - OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE - OF THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE. - =========================================================================*/ - -/*========================================================================= - Modifications were made by the GoFigure Dev. Team. - while at Megason Lab, Systems biology, Harvard Medical school, 2009 - - Copyright (c) 2009, President and Fellows of Harvard College. - All rights reserved. - - Redistribution and use in source and binary forms, with or without - modification, are permitted provided that the following conditions are met: - - Redistributions of source code must retain the above copyright notice, - this list of conditions and the following disclaimer. - Redistributions in binary form must reproduce the above copyright notice, - this list of conditions and the following disclaimer in the documentation - and/or other materials provided with the distribution. - Neither the name of the President and Fellows of Harvard College - nor the names of its contributors may be used to endorse or promote - products derived from this software without specific prior written - permission. - - THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS - "AS IS" AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, - THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR - PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT OWNER OR CONTRIBUTORS - BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, - OR CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT - OF SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR PROFITS; - OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, - WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE - OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF - ADVISED OF THE POSSIBILITY OF SUCH DAMAGE. - - =========================================================================*/ - -#include "vtkViewImage2D.h" - -#include "vtkCamera.h" -#include "vtkCommand.h" -#include "vtkImageActor.h" -#include "vtkImageData.h" -#include "vtkImageMapToWindowLevelColors.h" -#include "vtkInteractorStyleImage.h" -#include "vtkObjectFactory.h" -#include "vtkRenderWindow.h" -#include "vtkRenderWindowInteractor.h" -#include "vtkRenderer.h" -#include "vtkMatrix4x4.h" -#include "vtkTransform.h" -#include "vtkScalarBarActor.h" -#include "vtkOrientationAnnotation.h" -#include "vtkCornerAnnotation.h" -#include "vtkTextProperty.h" -#include "vtkLookupTable.h" -#include "vtkMath.h" -#include "vtkPlane.h" -#include "vtkCutter.h" -#include "vtkClipPolyData.h" -#include "vtkActor.h" -#include "vtkPolyDataMapper.h" -#include "vtkProp3DCollection.h" -#include "vtkDataSetCollection.h" -#include "vtkPoints.h" -#include "vtkIdList.h" -#include "vtkOutlineSource.h" -#include "vtkMatrixToLinearTransform.h" -#include "vtkPointData.h" -#include "vtkUnsignedCharArray.h" -#include "vtkIntArray.h" -#include "vtkImageAccumulate.h" -#include "vtkInteractorStyleImage2D.h" -#include "vtkViewImage2DCommand.h" -#include "vtkImageBlendWithMask.h" - -#include -#include - -vtkCxxRevisionMacro(vtkViewImage2D, "$Revision: 2 $"); -vtkStandardNewMacro(vtkViewImage2D); - -//---------------------------------------------------------------------------- -vtkViewImage2D::vtkViewImage2D() -{ - this->ConventionMatrix = vtkMatrix4x4::New(); - this->SliceImplicitPlane = vtkPlane::New(); - this->AdjustmentTransform = vtkTransform::New(); - this->SlicePlane = vtkPolyData::New(); - this->Command = vtkViewImage2DCommand::New(); - - this->Command->SetViewer( this); - - this->AdjustmentTransform->Identity(); - this->SliceImplicitPlane->SetOrigin( 0,0,0); - this->SliceImplicitPlane->SetNormal( 0,0,1); - - this->ViewConvention = vtkViewImage2D::VIEW_CONVENTION_RADIOLOGICAL; - this->ViewOrientation = vtkViewImage2D::VIEW_ORIENTATION_AXIAL; - - this->ConventionMatrix->Zero(); - this->ConventionMatrix->SetElement( 2,0, 1); - this->ConventionMatrix->SetElement( 2,1, 1); - this->ConventionMatrix->SetElement( 1,2, -1); - this->ConventionMatrix->SetElement( 0,3, 1); - this->ConventionMatrix->SetElement( 1,3, -1); - this->ConventionMatrix->SetElement( 2,3, -1); - - this->MaskFilter = vtkImageBlendWithMask::New(); - - this->InitializeSlicePlane(); - this->Zoom = 1.; -} - -//---------------------------------------------------------------------------- -vtkViewImage2D::~vtkViewImage2D() -{ - this->ConventionMatrix->Delete(); - this->SliceImplicitPlane->Delete(); - this->SlicePlane->Delete(); - this->AdjustmentTransform->Delete(); - this->MaskFilter->Delete(); - this->Command->Delete(); -} - -//---------------------------------------------------------------------------- -void vtkViewImage2D::SetViewConvention(int convention) -{ - if( ( convention < vtkViewImage2D::VIEW_CONVENTION_RADIOLOGICAL) || - convention == this->ViewConvention) - return; - - this->ViewConvention = convention; - - this->ConventionMatrix->SetElement( 2,0, 1); - this->ConventionMatrix->SetElement( 2,1, 1); - this->ConventionMatrix->SetElement( 1,2, -1); - - int x_watcher, y_watcher, z_watcher; - - switch(convention) - { - case vtkViewImage2D::VIEW_CONVENTION_RADIOLOGICAL: - default: - x_watcher = 1; - y_watcher = -1; - z_watcher = -1; - break; - case vtkViewImage2D::VIEW_CONVENTION_NEUROLOGICAL: - x_watcher = 1; - y_watcher = 1; - z_watcher = 1; - break; - ///\todo why not adding cardiologic conventions with oblique points of view ? - /// actually we can't: oblique point of view implies resampling data: loss of - /// data... and we don't want that, do we ? - } - this->ConventionMatrix->SetElement( 0,3, x_watcher); - this->ConventionMatrix->SetElement( 1,3, y_watcher); - this->ConventionMatrix->SetElement( 2,3, z_watcher); - - this->UpdateOrientation(); -} - -//---------------------------------------------------------------------------- -void vtkViewImage2D::SetViewOrientation(int orientation) -{ - ///\todo: in terms of view orientation here we can add some cardiac specific: - /// short axis, long axis, and 4-chambers !!! exiting ! - if( ( orientation < vtkViewImage2D::VIEW_ORIENTATION_SAGITTAL) || - orientation == this->ViewOrientation) - return; - - this->ViewOrientation = orientation; - unsigned int sliceorientation = 2; - double dot = 0; - for( unsigned int i=0; i<3; i++) - if( dot < fabs( this->GetOrientationMatrix()->GetElement( orientation, i))) - { - dot = fabs( this->GetOrientationMatrix()->GetElement( orientation, i)); - sliceorientation = i; - } - this->SetSliceOrientation( sliceorientation); -} -//---------------------------------------------------------------------------- -void vtkViewImage2D::SetOrientationMatrix( vtkMatrix4x4* matrix) -{ - this->Superclass::SetOrientationMatrix( matrix); - this->UpdateOrientation(); -} - - - -//---------------------------------------------------------------------------- -void vtkViewImage2D::InitializeSlicePlane(void) -{ - vtkPoints* points = vtkPoints::New(); - this->SlicePlane->SetPoints( points); - points->InsertNextPoint( 0, 0, 0); - points->InsertNextPoint( 1, 0, 0); - points->InsertNextPoint( 0, 1, 0); - points->InsertNextPoint( 1, 1, 0); - this->SlicePlane->Allocate( 4); - - vtkIdType pts[4]; - pts[0] = 0; pts[1] = 1; pts[2] = 3; pts[3] = 2; - this->SlicePlane->InsertNextCell( VTK_QUAD, 4, pts); - pts[0] = 0; pts[1] = 2; pts[2] = 3; pts[3] = 1; - this->SlicePlane->InsertNextCell( VTK_QUAD, 4, pts); - points->Delete(); - - vtkUnsignedCharArray* array = vtkUnsignedCharArray::New(); - array->SetName( "Colors"); - array->SetNumberOfComponents( 3); - unsigned char vals[3]; - vals[0] = 255; vals[1] = 0; vals[2] = 0; - array->InsertNextTupleValue( vals); - array->InsertNextTupleValue( vals); - array->InsertNextTupleValue( vals); - array->InsertNextTupleValue( vals); - - this->SlicePlane->GetPointData()->SetScalars( array); - array->Delete(); -} - -//---------------------------------------------------------------------------- -void vtkViewImage2D::UpdateOrientation() -{ - this->Superclass::UpdateOrientation(); - int axis = this->SetCameraToConvention(); - this->ViewOrientation = axis; - - this->SetAnnotationToConvention(); - this->SetSlicePlaneToConvention( axis); - this->UpdateSlicePlane(); -} - -//---------------------------------------------------------------------------- -void vtkViewImage2D::SetWorldCoordinates(double pos[3]) -{ - this->SetSlice( this->GetSliceForWorldCoordinates( pos)); -} - -//---------------------------------------------------------------------------- -int vtkViewImage2D::SetCameraToConvention(void) -{ - - vtkCamera *cam = this->Renderer ? this->Renderer->GetActiveCamera() : NULL; - if( !cam) - return -1; - - double position[4], focalpoint[4], viewup[4]; - double conventionposition[4]; - double conventionview[4]; - double focaltoposition[3]; - std::vector viewupchoices; - double first[3], second[3], third[3], fourth[3]; - bool inverseposition; - - // First recover information from the camera. - // Recover also information from the convention matrix - unsigned int i; - for( i=0; i<3; i++ ) - { - position[i] = cam->GetPosition()[i]; - focalpoint[i] = cam->GetFocalPoint()[i]; - conventionposition[i] = this->ConventionMatrix->GetElement( i,3); - conventionview[i] = this->ConventionMatrix->GetElement( i, - this->SliceOrientation ); - } - - position[3] = 1; - focalpoint[3] = 1; - conventionview[3] = 0; - viewup[3] = 0; - - // Apply the orientation matrix to all this information - this->GetOrientationMatrix()->MultiplyPoint( position, position ); - this->GetOrientationMatrix()->MultiplyPoint( focalpoint, focalpoint ); - this->GetOrientationMatrix()->MultiplyPoint( conventionview, conventionview ); - this->GetOrientationMatrix()->MultiplyPoint( conventionposition, - conventionposition ); - - // Compute the vector perpendicular to the view - for( i=0; i<3; i++ ) - focaltoposition[i] = position[i] - focalpoint[i]; - - // Deal with the position : - // invert it if necessary( symetry among the focal point) - inverseposition =( vtkMath::Dot( focaltoposition, conventionposition ) < 0 ); - if( inverseposition) - for( i=0; i<3; i++ ) - position[i] -= 2*focaltoposition[i]; - - // Now we now we have 4 choices for the View-Up information - for( i=0; i<3; i++ ) - { - first[i] = conventionview[i]; - second[i] = -conventionview[i]; - } - - vtkMath::Cross( first, focaltoposition, third ); - vtkMath::Cross( second, focaltoposition, fourth ); - vtkMath::Normalize( third ); - vtkMath::Normalize( fourth ); - - viewupchoices.push_back( first ); - viewupchoices.push_back( second ); - viewupchoices.push_back( third ); - viewupchoices.push_back( fourth ); - - // To choose between these choices, first we find the axis - // the closest to the focaltoposition vector - unsigned int id = 0; - double dot = 0; - for( i=0; i<3; i++ ) - { - if( dot < fabs( focaltoposition[i] ) ) - { - dot = fabs( focaltoposition[i] ); - id = i; - } - } - - // Then we choose the convention matrix vector correspondant to the - // one we just found - for( i=0; i<3; i++ ) - conventionview[i] = this->ConventionMatrix->GetElement( i, id ); - - // Then we pick from the 4 solutions the closest to the - // vector just found - unsigned int id2 = 0; - double dot2 = 0; - for( i=0; iSetPosition(position[0], position[1], position[2]); - cam->SetFocalPoint(focalpoint[0], focalpoint[1], focalpoint[2]); - cam->SetViewUp(viewup[0], viewup[1], viewup[2]); - - this->SliceImplicitPlane->SetNormal( focaltoposition ); - - double view_plane_normal[3]; - cam->GetViewPlaneNormal( view_plane_normal ); - - // Rotation of the( Anterior-Posterior)( Ventral-Dorsal) View - if( this->ViewOrientation == 0 ) - cam->Roll( -90. ); - - // these lines are meant to fix the bug that make the line - // actor appear behind the 2D scene... - double translation[3]; - for( i=0; i<3; i++ ) - translation[i] = 0.01 * view_plane_normal[i]; - this->AdjustmentTransform->Identity(); - this->AdjustmentTransform->Translate( translation); - - return id; -} - -//---------------------------------------------------------------------------- -void vtkViewImage2D::SetAnnotationToConvention(void) -{ - vtkCamera *cam = this->Renderer ? this->Renderer->GetActiveCamera() : NULL; - if( !cam) - return; - - std::string matrix[3][2]; - matrix[0][0] = "R";matrix[0][1] = "L"; - matrix[1][0] = "A";matrix[1][1] = "P"; - matrix[2][0] = "V";matrix[2][1] = "D"; - - std::string solution[4]; - - ///\todo surely there is a simpler way to do all of that ! - - double* viewup = cam->GetViewUp(); - double* normal = cam->GetViewPlaneNormal(); - double rightvector[3]; - vtkMath::Cross( normal, viewup, rightvector); - - unsigned int id1 = 0; - unsigned int id2 = 0; - unsigned int id3 = 0; - double dot1 = 0; - double dot2 = 0; - double dot3 = 0; - - for( unsigned int i=0; i<3; i++) - { - if( dot1 <= fabs( viewup[i])) - { - dot1 = fabs( viewup[i]); - id1 = i; - } - if( dot2 <= fabs( rightvector[i])) - { - dot2 = fabs( rightvector[i]); - id2 = i; - } - if( dot3 <= fabs( normal[i])) - { - dot3 = fabs( normal[i]); - id3 = i; - } - } - - if( viewup[id1] > 0) - { - solution[3] = matrix[id1][0]; - solution[1] = matrix[id1][1]; - } else { - solution[3] = matrix[id1][1]; - solution[1] = matrix[id1][0]; - } - if( rightvector[id2] > 0) - { - solution[0] = matrix[id2][0]; - solution[2] = matrix[id2][1]; - } else { - solution[0] = matrix[id2][1]; - solution[2] = matrix[id2][0]; - } - - for( unsigned int i=0; i<4; i++) - this->OrientationAnnotation->SetText( i, solution[i].c_str()); -} - - -//---------------------------------------------------------------------------- -void vtkViewImage2D::SetSlicePlaneToConvention(unsigned int axis) -{ - unsigned char vals[3] = {0,0,0}; - vals[axis] = 255; - - vtkUnsignedCharArray* array = vtkUnsignedCharArray::SafeDownCast( - this->SlicePlane->GetPointData()->GetScalars() ); - - if( !array) - return; - - array->SetTupleValue( 0, vals); - array->SetTupleValue( 1, vals); - array->SetTupleValue( 2, vals); - array->SetTupleValue( 3, vals); -} - -//---------------------------------------------------------------------------- -void vtkViewImage2D::SetSlice( int s) -{ - vtkCamera *cam = this->Renderer ? this->Renderer->GetActiveCamera() : NULL; - if( !cam) - return; - int *range = this->GetSliceRange(); - if( range &&( s >= range[0]) &&( s <= range[1]) ) - { - double* pos = this->GetWorldCoordinatesForSlice( s); - this->SliceImplicitPlane->SetOrigin( pos); - this->Superclass::SetSlice(s); - this->UpdateSlicePlane(); - } - else - this->Superclass::SetSlice(s); -} - -//---------------------------------------------------------------------------- -void vtkViewImage2D::UpdateSlicePlane( void) -{ - vtkPoints* oldpoints = vtkPoints::New(); - vtkPoints* points = vtkPoints::New(); - double x[3]; - double* bounds = this->ImageActor->GetDisplayBounds( ); - unsigned int added1; - unsigned int added2; - - for( unsigned int i=0; i<4; i++) - { - added1 =( !(i%2)) ? 1 : 0; - added2 =( i<2) ? 1 : 0; - x[(this->SliceOrientation+1)%3] = - bounds[2*((this->SliceOrientation+1)%3)+added1]; - x[(this->SliceOrientation+2)%3] = - bounds[2*((this->SliceOrientation+2)%3)+added2]; - x[this->SliceOrientation] = bounds[2*this->SliceOrientation]; - oldpoints->InsertPoint(i,x); - } - this->OrientationTransform->TransformPoints( oldpoints, points); - this->SlicePlane->SetPoints( points); - oldpoints->Delete(); - points->Delete(); -} - - -//---------------------------------------------------------------------------- -int vtkViewImage2D::GetSliceForWorldCoordinates(double pos[3]) -{ - int* indices = this->GetImageCoordinatesFromWorldCoordinates( pos); - return indices[this->SliceOrientation]; -} - -//---------------------------------------------------------------------------- -double* vtkViewImage2D::GetWorldCoordinatesForSlice(int slice) -{ - int indices[3] = {slice, slice, slice}; - return this->GetWorldCoordinatesFromImageCoordinates( indices); -} - -//---------------------------------------------------------------------------- -void vtkViewImage2D::ResetPosition( void ) -{ - if( !this->GetInput()) - return; - - int *range = this->GetSliceRange(); - this->SetSlice( vtkMath::Round( static_cast(0.5*(range[1]-range[0]))) ); -} -//---------------------------------------------------------------------------- -void vtkViewImage2D::ResetWindowLevel( void ) -{ - if( !this->GetInput()) - return; - - double* range = this->GetInput()->GetScalarRange(); - double window = range[1]-range[0]; - double level = 0.5*(range[1]+range[0]); - - this->SetColorWindow( window ); - this->SetColorLevel( level ); -} - -//---------------------------------------------------------------------------- -void vtkViewImage2D::ResetCamera(void) -{ - this->Zoom = 1.; - - double bounds[6]; - this->GetInput()->GetBounds( bounds ); - - double focal[3]; - focal[0] = 0.5 *( bounds[0] + bounds[1] ); - focal[1] = 0.5 *( bounds[2] + bounds[3] ); - focal[2] = 0.5 *( bounds[4] + bounds[5] ); - - double pos[3]; - pos[0] = focal[0]; - pos[1] = focal[1]; - pos[2] = focal[2]; - - double length[3]; - length[0] = 0.5 *( bounds[1] - bounds[0] ); - length[1] = 0.5 *( bounds[3] - bounds[2] ); - length[2] = 0.5 *( bounds[5] - bounds[4] ); - - double radius = 0.75 * sqrt( length[0] * length[0] + - length[1] * length[1] + - length[2] * length[2] ); - - vtkCamera *camera = this->GetRenderer()->GetActiveCamera(); - double distance = - radius/sin( camera->GetViewAngle()*vtkMath::Pi()/360.0 ); - - double view_plane_normal[3]; - camera->GetViewPlaneNormal( view_plane_normal ); - double* vup = camera->GetViewUp(); - - if( fabs( vtkMath::Dot( vup, view_plane_normal ) ) > 0.999 ) - { - vtkWarningMacro(<<"Resetting view-up since view plane normal is parallel"); - camera->SetViewUp(-vup[2], vup[0], vup[1]); - } - - pos[0] += distance * view_plane_normal[0]; - pos[1] += distance * view_plane_normal[1]; - pos[2] += distance * view_plane_normal[2]; - - this->SetCameraFocalAndPosition( focal, pos ); - - double max_length = std::max( length[0], std::max( length[1], length[2] ) ); - bounds[0] = focal[0] - 50. * max_length; - bounds[1] = focal[0] + 50. * max_length; - bounds[2] = focal[1] - 50. * max_length; - bounds[3] = focal[1] + 50. * max_length; - bounds[4] = focal[2] - 50. * max_length; - bounds[5] = focal[2] + 50. * max_length; - this->GetRenderer()->ResetCameraClippingRange( bounds ); - - camera->SetParallelScale(radius); -} -//---------------------------------------------------------------------------- -void vtkViewImage2D::Reset( void) -{ - this->ResetPosition(); - this->ResetWindowLevel(); - this->ResetCamera(); -} - -//---------------------------------------------------------------------------- -void vtkViewImage2D::SetCameraFocalAndPosition( double focal[3], double pos[3] ) -{ - vtkRenderer* ren = this->GetRenderer(); - - if( !ren ) - { - return; - } - vtkCamera* camera = ren->GetActiveCamera(); - - if( !camera ) - { - return; - } - - camera->SetFocalPoint( focal[0], focal[1], focal[2] ); - camera->SetPosition( pos[0], pos[1], pos[2] ); -} - -void vtkViewImage2D::GetCameraFocalAndPosition( double focal[3], double pos[3] ) -{ - vtkRenderer* ren = this->GetRenderer(); - - if( !ren ) - { - return; - } - vtkCamera* camera = ren->GetActiveCamera(); - - if( !camera ) - { - return; - } - - camera->GetPosition( pos ); - camera->GetFocalPoint( focal ); -} -//---------------------------------------------------------------------------- -double* vtkViewImage2D::GetWorldCoordinatesFromDisplayPosition( int xy[2] ) -{ - - if( !this->GetInput() || !this->GetRenderer()) - { - double* nullpos = new double[3]; - nullpos[0] = 0; nullpos[1] = 0; nullpos[2] = 0; - return nullpos; - } - - double* slicepos = this->GetWorldCoordinatesForSlice( this->GetSlice()); - this->GetRenderer()->SetWorldPoint( slicepos[0], slicepos[1], slicepos[2], - 1.0); - this->GetRenderer()->WorldToDisplay(); - this->GetRenderer()->SetDisplayPoint( xy[0], xy[1], - this->GetRenderer()->GetDisplayPoint()[2]); - this->GetRenderer()->DisplayToWorld(); - return this->GetRenderer()->GetWorldPoint(); -} - - -//---------------------------------------------------------------------------- -void vtkViewImage2D::InstallPipeline() -{ - if( this->RenderWindow && this->Renderer) - { - this->RenderWindow->AddRenderer(this->Renderer); - } - - if( this->Interactor) - { - if( !this->InteractorStyle) - { - this->InteractorStyle = vtkInteractorStyleImage2D::New(); - this->Interactor->SetInteractorStyle(this->InteractorStyle); -#if 0 - this->InteractorStyle->AddObserver( - vtkCommand::StartWindowLevelEvent, this->Command); - this->InteractorStyle->AddObserver( - vtkCommand::WindowLevelEvent, this->Command); -#endif - this->InteractorStyle->AddObserver( - vtkCommand::KeyPressEvent, this->Command); - this->InteractorStyle->AddObserver( - vtkViewImage2DCommand::StartSliceMoveEvent, this->Command); - this->InteractorStyle->AddObserver( - vtkViewImage2DCommand::SliceMoveEvent, this->Command); - this->InteractorStyle->AddObserver( - vtkViewImage2DCommand::EndSliceMoveEvent, this->Command); - this->InteractorStyle->AddObserver( - vtkViewImage2DCommand::ResetViewerEvent, this->Command); - this->InteractorStyle->AddObserver( - vtkViewImage2DCommand::ZoomEvent, this->Command); - this->InteractorStyle->AddObserver( - vtkViewImage2DCommand::PanEvent, this->Command); - this->InteractorStyle->AddObserver( vtkCommand::InteractionEvent, - this->Command); - } - - this->Interactor->SetInteractorStyle(this->InteractorStyle); - this->Interactor->SetRenderWindow(this->RenderWindow); - } - - if( this->Renderer && this->ImageActor) - { - this->Renderer->AddViewProp(this->ImageActor); - } - - if( this->ImageActor && this->WindowLevel) - { - this->ImageActor->SetInput(this->WindowLevel->GetOutput()); - } -} - -//---------------------------------------------------------------------------- -void vtkViewImage2D::SetInterpolate(const int& val ) -{ - if( this->ImageActor) - { - this->ImageActor->SetInterpolate( val); - } -} - -//---------------------------------------------------------------------------- -int vtkViewImage2D::GetInterpolate(void) -{ - if( this->ImageActor) - return this->ImageActor->GetInterpolate(); - return 0; -} - -//---------------------------------------------------------------------------- -void vtkViewImage2D::AddDataSet( vtkPolyData* dataset, - vtkProperty* property, - const bool& intersection ) -{ - vtkCamera *cam = this->Renderer ? this->Renderer->GetActiveCamera() : NULL; - if( !cam ) - return; - - vtkPolyDataMapper* mapper = vtkPolyDataMapper::New(); - vtkActor* actor = vtkActor::New(); - - vtkClipPolyData* cutter = vtkClipPolyData::New(); - - if( intersection ) - { - cutter->SetInputConnection( 0, dataset->GetProducerPort()); - cutter->SetClipFunction( this->SliceImplicitPlane ); - cutter->InsideOutOn(); - mapper->SetInputConnection( 0, cutter->GetOutputPort()); - } - else - { - mapper->SetInput( dataset ); - } - - actor->SetMapper( mapper ); - if( property ) - actor->SetProperty( property ); - - actor->SetUserTransform( this->AdjustmentTransform ); - - this->Renderer->AddViewProp( actor ); - this->DataSetCollection->AddItem( dataset ); - this->Prop3DCollection->AddItem( actor ); - - cutter->Delete(); - mapper->Delete(); - actor->Delete(); -} -//---------------------------------------------------------------------------- - - -//---------------------------------------------------------------------------- -void vtkViewImage2D::AddDataSet( vtkDataSet* dataset, - vtkProperty* property, - const bool& intersection ) -{ - vtkCamera *cam = this->Renderer ? this->Renderer->GetActiveCamera() : NULL; - if( !cam ) - return; - - vtkPolyDataMapper* mapper = vtkPolyDataMapper::New(); - vtkActor* actor = vtkActor::New(); - - vtkCutter* cutter = vtkCutter::New(); - - if( intersection ) - { - cutter->SetInputConnection( 0, dataset->GetProducerPort()); - cutter->SetCutFunction( this->SliceImplicitPlane ); - mapper->SetInputConnection( 0, cutter->GetOutputPort()); - } - else - { - mapper->SetInput( vtkPolyData::SafeDownCast( dataset ) ); - } - - actor->SetMapper( mapper ); - if( property ) - actor->SetProperty( property ); - - actor->SetUserTransform( this->AdjustmentTransform ); - - this->Renderer->AddViewProp( actor ); - this->DataSetCollection->AddItem( dataset ); - this->Prop3DCollection->AddItem( actor ); - - cutter->Delete(); - mapper->Delete(); - actor->Delete(); -} - - -//---------------------------------------------------------------------------- -void vtkViewImage2D::SetMaskImage( vtkImageData* mask, - vtkLookupTable* lut, const bool& iStatus ) -{ - vtkImageData* input = this->GetInput(); - - if( !input || !mask || !lut) - { - return; - } - - vtkViewImage::SetMaskImage( mask, lut ); - - // check if the mask dimensions match the image dimensions - int dim1[3], dim2[3]; - input->GetDimensions( dim1); - mask->GetDimensions( dim2); - - if( ( dim1[0] != dim2[0] ) || - ( dim1[1] != dim2[1] ) || - ( dim1[2] != dim2[2] ) ) - { - vtkErrorMacro("Dimensions of the mask image do not match"); - return; - } - - // check if the scalar range match the number of entries in the LUT - double range[2]; - mask->GetScalarRange( range); - int numLUT = lut->GetNumberOfTableValues(); - if( numLUT < static_cast< int >( range[1] + 1. ) ) - { - vtkErrorMacro( <<"The number of LUT entries is less than the" - <<" range of the mask."); - return; - } - this->MaskFilter->SetImageInput( this->WindowLevel->GetOutput() ); - this->MaskFilter->SetMaskInput( mask ); - this->MaskFilter->SetLookupTable( lut ); - this->MaskFilter->Update(); - - this->AddDataSet( this->MaskFilter->GetOutput(), 0, iStatus ); -} diff --git a/branches/ColorViewer/ExternalCode/MegaVTK/vtkRenderingAddOn/vtkViewImage2D.h b/branches/ColorViewer/ExternalCode/MegaVTK/vtkRenderingAddOn/vtkViewImage2D.h deleted file mode 100644 index 7482edd8..00000000 --- a/branches/ColorViewer/ExternalCode/MegaVTK/vtkRenderingAddOn/vtkViewImage2D.h +++ /dev/null @@ -1,280 +0,0 @@ -/*======================================================================== - Copyright (c) INRIA - ASCLEPIOS Project (http://www-sop.inria.fr/asclepios). - All rights reserved. - - Redistribution and use in source and binary forms, with or without - modification, are permitted provided that the following conditions are met: - - * Redistributions of source code must retain the above copyright notice, - this list of conditions and the following disclaimer. - - * Redistributions in binary form must reproduce the above copyright notice, - this list of conditions and the following disclaimer in the documentation - and/or other materials provided with the distribution. - - * Neither the name of INRIA or ASCLEPIOS, nor the names of any contributors - may be used to endorse or promote products derived from this software - without specific prior written permission. - - * Modified source versions must be plainly marked as such, and must not be - misrepresented as being the original software. - - THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDER AND CONTRIBUTORS ``AS IS'' - AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE - IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE - ARE DISCLAIMED. IN NO EVENT SHALL THE AUTHORS OR CONTRIBUTORS BE LIABLE FOR - ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL - DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR - SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER - CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, - OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE - OF THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE. - =========================================================================*/ - -/*========================================================================= - Modifications were made by the GoFigure Dev. Team. - while at Megason Lab, Systems biology, Harvard Medical school, 2009 - - Copyright (c) 2009, President and Fellows of Harvard College. - All rights reserved. - - Redistribution and use in source and binary forms, with or without - modification, are permitted provided that the following conditions are met: - - Redistributions of source code must retain the above copyright notice, - this list of conditions and the following disclaimer. - Redistributions in binary form must reproduce the above copyright notice, - this list of conditions and the following disclaimer in the documentation - and/or other materials provided with the distribution. - Neither the name of the President and Fellows of Harvard College - nor the names of its contributors may be used to endorse or promote - products derived from this software without specific prior written - permission. - - THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS - "AS IS" AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, - THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR - PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT OWNER OR CONTRIBUTORS - BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, - OR CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT - OF SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR PROFITS; - OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, - WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE - OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF - ADVISED OF THE POSSIBILITY OF SUCH DAMAGE. - - =========================================================================*/ - -#ifndef _vtkViewImage2D_h_ -#define _vtkViewImage2D_h_ - -#include "vtkViewImage.h" - -class vtkPlane; -class vtkViewImage2DCommand; -class vtkTransform; -class vtkImageBlendWithMask; - -/** - -*/ - - -class vtkViewImage2D : public vtkViewImage -{ - - public: - - static vtkViewImage2D* New(); - vtkTypeRevisionMacro(vtkViewImage2D, vtkViewImage); - /** - Description: - The orientation of the view is a abstract representation of the object - we are looking at. It results from the acquisition plane. Setting the View - Orientation by calling SetViewOrientation() will imply the view to set its - inner "slice" orientation. (slice orientation == 2 means plane of - acquisition.) - - IMPORTANT NOTE: - - The view orientations defined here are orthogonal to the normal basis - in the scanner. A very interesting improvement would be to define "oblique" - view orientations for cardiac imaging, something like: - - VIEW_ORIENTATION_SHORT_AXIS, VIEW_ORIENTATION_LONG_AXIS, and - VIEW_ORIENTATION_FOUR_CHAMBER could define the different views that are - usually used in cardiac imaging. - - From this user-input information, the idea would be to evaluate which slice - orientation does correspond to the requested view. This can be done by - evaluating the dot product between the axis of acquisition and a - pre-defined oblique axis that "should" correspond to the requested - orientation... - **/ - //BTX - enum - { - VIEW_ORIENTATION_SAGITTAL = 0, - VIEW_ORIENTATION_CORONAL = 1, - VIEW_ORIENTATION_AXIAL = 2 - }; - //ETX - /** - Description: - **/ - //BTX - enum - { - VIEW_CONVENTION_RADIOLOGICAL = 0, - VIEW_CONVENTION_NEUROLOGICAL = 1 - }; - //ETX - - /** - The SliceImplicitPlane instance (GetImplicitSlicePlane()) is the - implicit function that cuts every dataset that is added with AddDataSet(). - */ - vtkGetObjectMacro (SliceImplicitPlane, vtkPlane); - /** - The SlicePlane instance (GetSlicePlane()) is the polygonal - square corresponding to the slice plane, - it is updated each time the slice changes, - and is color-coded according to conventions - */ - vtkGetObjectMacro (SlicePlane, vtkPolyData); - /** - The world is not always what we think it is ... - - Use this method to move the viewer slice such that the position - (in world coordinates) given by the arguments is contained by - the slice plane. If the given position is outside the bounds - of the image, then the slice will be as close as possible. - */ - virtual void SetWorldCoordinates (double pos[3]); - - /** - Set/Get the current slice to display (depending on the orientation - this can be in X, Y or Z). - */ - virtual void SetSlice(int s); - - /** - Instead of setting the slice orientation to an axis (YZ - XZ - XY), - you can force the view to be axial (foot-head), coronal (front-back), - or sagittal (left-right). It will just use the OrientationMatrix - (GetOrientationMatrix()) to check which slice orientation to pick. - */ - vtkGetMacro (ViewOrientation, int); - virtual void SetViewOrientation (int orientation); - virtual void SetOrientationMatrix (vtkMatrix4x4* matrix); - - /** - The ViewConvention instance explains where to place the camera around - the patient. Default behaviour is Radiological convention, meaning - we respectively look at the patient from his feet, his face and his left - ear. - - For Neurological convention, we respectively look from the top of his head, - the the back of his head, and his left ear. - */ - ///\todo Why not adding cardiologic conventions where we look at the patient in - /// oblique angles ? - vtkGetMacro (ViewConvention, int); - virtual void SetViewConvention (int convention); - /** - Convert an indices coordinate point (image coordinates) into a world - coordinate point - */ - virtual double* GetWorldCoordinatesForSlice (int slice); - /** - Convert a world coordinate point into an image indices coordinate point - */ - virtual int GetSliceForWorldCoordinates(double pos[3]); - - virtual void ResetCamera(void); - /** - Reset the 3D position to center - */ - virtual void ResetPosition(void); - /** - Reset the window level - */ - virtual void ResetWindowLevel(void); - /** - Reset position - zoom - window/level to default - */ - virtual void Reset(void); - /** - */ - virtual double* GetWorldCoordinatesFromDisplayPosition( int xy[2] ); - virtual double* GetWorldCoordinatesFromDisplayPosition( const int& x, const int& y ) - { - int xy[2] = {x,y}; - return this->GetWorldCoordinatesFromDisplayPosition( xy ); - } - - vtkSetMacro( Zoom, double ); - vtkGetMacro( Zoom, double ); - - vtkSetVector3Macro( CameraMotionVector, double ); - vtkGetVector3Macro( CameraMotionVector, double ); - - void SetCameraFocalAndPosition( double focal[3], double pos[3] ); - void GetCameraFocalAndPosition( double focal[3], double pos[3] ); - - vtkGetObjectMacro (Command, vtkViewImage2DCommand); - - virtual void SetInterpolate( const int& val ); - virtual int GetInterpolate (); - vtkBooleanMacro (Interpolate, int); - /** - Add a dataset to the view (has to be subclass of vtkPointSet). - The dataset will be cut through the implicit slice plane - (GetImplicitSlicePlane()). - - This results in a loss of dimensionality, i.e. tetrahedron will be displayed - as triangles, triangles as lines, lines as points. - A vtkProperty of the dataset can be specified. - */ - virtual void AddDataSet (vtkDataSet* dataset, - vtkProperty* property = NULL, - const bool& intersection = true ); - - virtual void AddDataSet( vtkPolyData* polydata, - vtkProperty* property = NULL, - const bool& intersection = true ); - - virtual void SetMaskImage( vtkImageData* mask, - vtkLookupTable* lut, const bool& status ); - - protected: - - vtkViewImage2D(); - ~vtkViewImage2D(); - - // Description: - virtual void UpdateOrientation(); - virtual int SetCameraToConvention (void); - virtual void SetAnnotationToConvention(void); - virtual void InitializeSlicePlane (void); - virtual void UpdateSlicePlane (void); - virtual void SetSlicePlaneToConvention (unsigned int axis); - virtual void InstallPipeline(); - - vtkMatrix4x4* ConventionMatrix; - vtkPlane* SliceImplicitPlane; - vtkTransform* AdjustmentTransform; - vtkPolyData* SlicePlane; - - vtkImageBlendWithMask* MaskFilter; - - vtkViewImage2DCommand* Command; - - int ViewOrientation; - int ViewConvention; - - double Zoom; - double CameraMotionVector[3]; -}; - -#endif /* _vtkViewImage2D_h_ */ diff --git a/branches/ColorViewer/ExternalCode/MegaVTK/vtkRenderingAddOn/vtkViewImage2DCollection.cxx b/branches/ColorViewer/ExternalCode/MegaVTK/vtkRenderingAddOn/vtkViewImage2DCollection.cxx deleted file mode 100644 index 6956998b..00000000 --- a/branches/ColorViewer/ExternalCode/MegaVTK/vtkRenderingAddOn/vtkViewImage2DCollection.cxx +++ /dev/null @@ -1,313 +0,0 @@ -/*======================================================================== - Copyright (c) INRIA - ASCLEPIOS Project (http://www-sop.inria.fr/asclepios). - All rights reserved. - - Redistribution and use in source and binary forms, with or without - modification, are permitted provided that the following conditions are met: - - * Redistributions of source code must retain the above copyright notice, - this list of conditions and the following disclaimer. - - * Redistributions in binary form must reproduce the above copyright notice, - this list of conditions and the following disclaimer in the documentation - and/or other materials provided with the distribution. - - * Neither the name of INRIA or ASCLEPIOS, nor the names of any contributors - may be used to endorse or promote products derived from this software - without specific prior written permission. - - * Modified source versions must be plainly marked as such, and must not be - misrepresented as being the original software. - - THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDER AND CONTRIBUTORS ``AS IS'' - AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE - IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE - ARE DISCLAIMED. IN NO EVENT SHALL THE AUTHORS OR CONTRIBUTORS BE LIABLE FOR - ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL - DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR - SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER - CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, - OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE - OF THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE. - =========================================================================*/ - -/*========================================================================= - Modifications were made by the GoFigure Dev. Team. - while at Megason Lab, Systems biology, Harvard Medical school, 2009 - - Copyright (c) 2009, President and Fellows of Harvard College. - All rights reserved. - - Redistribution and use in source and binary forms, with or without - modification, are permitted provided that the following conditions are met: - - Redistributions of source code must retain the above copyright notice, - this list of conditions and the following disclaimer. - Redistributions in binary form must reproduce the above copyright notice, - this list of conditions and the following disclaimer in the documentation - and/or other materials provided with the distribution. - Neither the name of the President and Fellows of Harvard College - nor the names of its contributors may be used to endorse or promote - products derived from this software without specific prior written - permission. - - THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS - "AS IS" AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, - THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR - PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT OWNER OR CONTRIBUTORS - BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, - OR CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT - OF SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR PROFITS; - OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, - WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE - OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF - ADVISED OF THE POSSIBILITY OF SUCH DAMAGE. - - =========================================================================*/ - -#include "vtkViewImage2DCollection.h" - -#include "vtkCamera.h" -#include "vtkCommand.h" -#include "vtkImageActor.h" -#include "vtkImageData.h" -#include "vtkImageMapToWindowLevelColors.h" -#include "vtkInteractorStyleImage.h" -#include "vtkObjectFactory.h" -#include "vtkRenderWindow.h" -#include "vtkRenderWindowInteractor.h" -#include "vtkRenderer.h" -#include "vtkRendererCollection.h" -#include "vtkMatrix4x4.h" -#include "vtkScalarBarActor.h" -#include "vtkOrientationAnnotation.h" -#include "vtkCornerAnnotation.h" -#include "vtkTextProperty.h" -#include "vtkLookupTable.h" -#include "vtkMath.h" -#include "vtkPlane.h" -#include "vtkCutter.h" -#include "vtkActor.h" -#include "vtkPolyDataMapper.h" -#include "vtkProp3DCollection.h" -#include "vtkDataSetCollection.h" -#include "vtkPoints.h" -#include "vtkIdList.h" -#include "vtkOutlineSource.h" -#include "vtkMatrixToLinearTransform.h" -#include "vtkPointData.h" -#include "vtkUnsignedCharArray.h" -#include "vtkIntArray.h" -#include "vtkImageAccumulate.h" -#include "vtkProperty.h" - -#include "vtkViewImage2DCommand.h" -#include "vtkInteractorStyleImage2D.h" - -#include -#include -#include - -vtkCxxRevisionMacro(vtkViewImage2DCollection, "$Revision: 2 $"); -vtkStandardNewMacro(vtkViewImage2DCollection); - - -//---------------------------------------------------------------------------- -vtkViewImage2DCollection::vtkViewImage2DCollection() -{ - this->Command = vtkViewImage2DCollectionCommand::New(); - this->Command->SetCollection (this); - this->ExtraRenderWindow = NULL; -} - -//---------------------------------------------------------------------------- -vtkViewImage2DCollection::~vtkViewImage2DCollection() -{ - this->Command->Delete(); -} - - -// Add an object to the list. Does not prevent duplicate entries. -void vtkViewImage2DCollection::AddItem(vtkViewImage2D *a) -{ - this->Superclass::AddItem (a); - - a->GetInteractorStyle()->AddObserver (vtkCommand::ResetWindowLevelEvent, - this->Command); - a->GetInteractorStyle()->AddObserver (vtkCommand::WindowLevelEvent, - this->Command); - a->GetInteractorStyle()->AddObserver (vtkViewImage2DCommand::SliceMoveEvent, - this->Command); - a->GetInteractorStyle()->AddObserver ( - vtkViewImage2DCommand::RequestedPositionEvent, this->Command); - a->GetInteractorStyle()->AddObserver ( - vtkViewImage2DCommand::ResetViewerEvent, this->Command); - -} - -// Remove an object from the list. Removes the first object found, not -// all occurrences. If no object found, list is unaffected. See warning -// in description of RemoveItem(int). -void vtkViewImage2DCollection::RemoveItem(vtkViewImage2D *a) -{ - this->Superclass::RemoveItem (a); -} - -// Remove all objects from the list. -void vtkViewImage2DCollection::RemoveAllItems() -{ - this->Superclass::RemoveAllItems (); -} - - -// Replace the i'th item in the collection with a -void vtkViewImage2DCollection::ReplaceItem(int i, vtkViewImage2D *a) -{ - this->Superclass::ReplaceItem (i, a); -} - - -// Remove the i'th item in the list. -// Be careful if using this function during traversal of the list using -// GetNextItemAsObject (or GetNextItem in derived class). The list WILL -// be shortened if a valid index is given! If this->Current is equal to the -// element being removed, have it point to then next element in the list. -void vtkViewImage2DCollection::RemoveItem(int i) -{ - this->Superclass::RemoveItem (i); -} - - -void vtkViewImage2DCollection::Initialize(void) -{ - vtkProperty* plane_property = vtkProperty::New(); - plane_property->SetRepresentationToWireframe(); - - for (int i=0; iGetNumberOfItems(); i++) - { - for (int j=0; jGetNumberOfItems(); j++) - { - this->GetItem (j)->AddDataSet( - this->GetItem (i)->GetSlicePlane(), plane_property, ( i != j ) ); - } - } - plane_property->Delete(); -} - -void vtkViewImage2DCollection::SyncRender(void) -{ - this->InitTraversal(); - vtkViewImage2D* item = this->GetNextItem(); - while(item) - { - item->Render (); - item = this->GetNextItem(); - } - if (this->ExtraRenderWindow) - this->ExtraRenderWindow->Render(); -} - - -void vtkViewImage2DCollection::SyncReset(void) -{ - this->InitTraversal(); - vtkViewImage2D* item = this->GetNextItem(); - while(item) - { - item->Reset (); - item = this->GetNextItem(); - } -} - -void vtkViewImage2DCollection::SyncResetWindowLevel(void) -{ - this->InitTraversal(); - vtkViewImage2D* item = this->GetNextItem(); - while(item) - { - item->ResetWindowLevel (); - item = this->GetNextItem(); - } -} - - - - -//---------------------------------------------------------------------------- -vtkViewImage2DCollectionCommand::vtkViewImage2DCollectionCommand() -{ -} - -//---------------------------------------------------------------------------- -void vtkViewImage2DCollectionCommand::SetCollection(vtkViewImage2DCollection* p) -{ - this->Collection = p; -} - -//---------------------------------------------------------------------------- -void vtkViewImage2DCollectionCommand::Execute(vtkObject *caller, - unsigned long event, - void *vtkNotUsed(callData)) -{ - if (!this->Collection) - return; - - vtkInteractorStyleImage2D *isi = - vtkInteractorStyleImage2D::SafeDownCast(caller); - this->GetCollection()->InitTraversal(); - vtkViewImage2D* v = this->GetCollection()->GetNextItem(); - vtkViewImage2D* viewer = NULL; - while(v) - { - if (isi == v->GetInteractorStyle()) - viewer = v; - v = this->GetCollection()->GetNextItem(); - } - - if (!isi || !viewer || !viewer->GetInput()) - return; - - // Reset - if (event == vtkCommand::ResetWindowLevelEvent) - { - this->Collection->SyncResetWindowLevel(); - this->Collection->SyncRender(); - return; - } - // Reset - if (event == vtkViewImage2DCommand::ResetViewerEvent) - { - this->Collection->SyncReset(); - this->Collection->SyncRender(); - return; - } - - // Adjust the window level here - if (event == vtkCommand::WindowLevelEvent) - { - this->Collection->SyncSetColorWindow(viewer->GetColorWindow()); - this->Collection->SyncSetColorLevel(viewer->GetColorLevel()); - this->Collection->SyncRender(); - } - - // Move - if (event == vtkViewImage2DCommand::SliceMoveEvent) - { - // do not synchronize this, but render all - this->Collection->SyncRender(); - - } - - // Position requested - if (event == vtkViewImage2DCommand::RequestedPositionEvent) - { - double* position = viewer->GetWorldCoordinatesFromDisplayPosition ( - isi->GetRequestedPosition ()); - this->Collection->SyncSetWorldCoordinates(position); - this->Collection->SyncRender(); - } - - -} - - diff --git a/branches/ColorViewer/ExternalCode/MegaVTK/vtkRenderingAddOn/vtkViewImage2DCollection.h b/branches/ColorViewer/ExternalCode/MegaVTK/vtkRenderingAddOn/vtkViewImage2DCollection.h deleted file mode 100644 index fe92accc..00000000 --- a/branches/ColorViewer/ExternalCode/MegaVTK/vtkRenderingAddOn/vtkViewImage2DCollection.h +++ /dev/null @@ -1,255 +0,0 @@ -/*======================================================================== - Copyright (c) INRIA - ASCLEPIOS Project (http://www-sop.inria.fr/asclepios). - All rights reserved. - - Redistribution and use in source and binary forms, with or without - modification, are permitted provided that the following conditions are met: - - * Redistributions of source code must retain the above copyright notice, - this list of conditions and the following disclaimer. - - * Redistributions in binary form must reproduce the above copyright notice, - this list of conditions and the following disclaimer in the documentation - and/or other materials provided with the distribution. - - * Neither the name of INRIA or ASCLEPIOS, nor the names of any contributors - may be used to endorse or promote products derived from this software - without specific prior written permission. - - * Modified source versions must be plainly marked as such, and must not be - misrepresented as being the original software. - - THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDER AND CONTRIBUTORS ``AS IS'' - AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE - IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE - ARE DISCLAIMED. IN NO EVENT SHALL THE AUTHORS OR CONTRIBUTORS BE LIABLE FOR - ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL - DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR - SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER - CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, - OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE - OF THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE. - =========================================================================*/ - -/*========================================================================= - Modifications were made by the GoFigure Dev. Team. - while at Megason Lab, Systems biology, Harvard Medical school, 2009 - - Copyright (c) 2009, President and Fellows of Harvard College. - All rights reserved. - - Redistribution and use in source and binary forms, with or without - modification, are permitted provided that the following conditions are met: - - Redistributions of source code must retain the above copyright notice, - this list of conditions and the following disclaimer. - Redistributions in binary form must reproduce the above copyright notice, - this list of conditions and the following disclaimer in the documentation - and/or other materials provided with the distribution. - Neither the name of the President and Fellows of Harvard College - nor the names of its contributors may be used to endorse or promote - products derived from this software without specific prior written - permission. - - THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS - "AS IS" AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, - THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR - PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT OWNER OR CONTRIBUTORS - BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, - OR CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT - OF SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR PROFITS; - OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, - WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE - OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF - ADVISED OF THE POSSIBILITY OF SUCH DAMAGE. - - =========================================================================*/ - -#ifndef _vtkViewImage2DCollection_h_ -#define _vtkViewImage2DCollection_h_ - -#include "vtkCollection.h" -#include "vtkCommand.h" - -#include "vtkViewImage2D.h" -/** - This macro can be useful as we frequently set - an instance this way, meaning unregistering previously set instance, - registering given instance, and call a modified event. - However this might be not the best place to define it... -*/ -//BTX -#define vtkSyncSetMacro(name, type, base ) \ - virtual void SyncSet##name (type _arg) \ - { \ - this->InitTraversal(); \ - base* item = this->GetNextItem(); \ - while(item) \ - { \ - item->Set##name (_arg); \ - item = this->GetNextItem(); \ - } \ - } -///ETX - -///BTX -#define vtkSyncSetObjectMacro(name, type, base) \ - virtual void SyncSet##name (type* _arg) \ - { \ - this->InitTraversal(); \ - base* item = this->GetNextItem(); \ - while(item) \ - { \ - item->Set##name (_arg); \ - item = this->GetNextItem(); \ - } \ - } - -///ETX - - -class vtkScalarBarActor; -class vtkLookupTable; -class vtkTextProperty; -class vtkCornerAnnotation; -class vtkOrientationAnnotation; -class vtkPlane; -class vtkActor; -class vtkDataSet; -class vtkPolyData; -class vtkProperty; -class vtkProp3DCollection; -class vtkDataSetCollection; -class vtkMatrixToLinearTransform; -class vtkViewImage2DCollectionCommand; - -/** - -*/ - -class vtkViewImage2DCollection : public vtkCollection -{ - public: - - static vtkViewImage2DCollection* New(); - vtkTypeRevisionMacro(vtkViewImage2DCollection, vtkCollection); - - // Description: - // Get the next vtkViewImage2D in the list. Return NULL when at the end of the - // list. - vtkViewImage2D *GetNextItem() { - return static_cast(this->GetNextItemAsObject());}; - // Description: - // Get the next vtkViewImage2D2D in the list. Return NULL when at the end of - // the list. - vtkViewImage2D *GetItem(int i) { - return static_cast(this->GetItemAsObject(i));}; - // Description: - // Add an object to the list. Does not prevent duplicate entries. - void AddItem(vtkViewImage2D*); - - // Description: - // Replace the i'th item in the collection with a - void ReplaceItem(int i, vtkViewImage2D *); - - // Description: - // Remove the i'th item in the list. - // Be careful if using this function during traversal of the list using - // GetNextItemAsObject (or GetNextItem in derived class). The list WILL - // be shortened if a valid index is given! If this->Current is equal to the - // element being removed, have it point to then next element in the list. - void RemoveItem(int i); - - // Description: - // Remove an object from the list. Removes the first object found, not - // all occurrences. If no object found, list is unaffected. See warning - // in description of RemoveItem(int). - void RemoveItem(vtkViewImage2D *); - - // Description: - // Remove all objects from the list. - void RemoveAllItems(); - - // Description: - // Initialize the viewers togethers. - void Initialize(void); - - - vtkGetObjectMacro (Command, vtkViewImage2DCollectionCommand); - vtkGetObjectMacro (ExtraRenderWindow, vtkRenderWindow); - void SetExtraRenderWindow (vtkRenderWindow* win) - { this->ExtraRenderWindow = win; } - - vtkSyncSetMacro (Slice, int, vtkViewImage2D); - vtkSyncSetMacro (SliceOrientation, int, vtkViewImage2D); - vtkSyncSetMacro (ShowAnnotations, int, vtkViewImage2D); - vtkSyncSetMacro (ShowScalarBar, int, vtkViewImage2D); - - vtkSyncSetMacro (ColorWindow, double, vtkViewImage2D); - vtkSyncSetMacro (ColorLevel, double, vtkViewImage2D); - - vtkSyncSetObjectMacro (OrientationMatrix, vtkMatrix4x4, vtkViewImage2D); - vtkSyncSetObjectMacro (LookupTable, vtkLookupTable, vtkViewImage2D); - vtkSyncSetObjectMacro (TextProperty, vtkTextProperty, vtkViewImage2D); - vtkSyncSetObjectMacro (Input, vtkImageData, vtkViewImage2D); - vtkSyncSetObjectMacro (InputConnection, vtkAlgorithmOutput, vtkViewImage2D); - - vtkSyncSetObjectMacro (Size, int, vtkViewImage2D); - vtkSyncSetObjectMacro (Position, int, vtkViewImage2D); - vtkSyncSetObjectMacro (WorldCoordinates, double, vtkViewImage2D); - vtkSyncSetObjectMacro (Background, double, vtkViewImage2D); - - void SyncRender (void); - void SyncResetWindowLevel (void); - void SyncReset (void); - - protected: - - vtkViewImage2DCollection(); - ~vtkViewImage2DCollection(); - - vtkViewImage2DCollectionCommand* Command; - vtkRenderWindow* ExtraRenderWindow; -}; - - - - -class vtkViewImage2DCollectionCommand : - public vtkCommand -{ - - public: - - static vtkViewImage2DCollectionCommand *New() - {return new vtkViewImage2DCollectionCommand;}; - - vtkViewImage2DCollection* GetCollection (void) - { return this->Collection;}; - void SetCollection (vtkViewImage2DCollection* p); - - // Description: - // Satisfy the superclass API for callbacks. Recall that the caller is - // the instance invoking the event; eid is the event id (see - // vtkCommand.h); and calldata is information sent when the callback - // was invoked (e.g., progress value in the vtkCommand::ProgressEvent). - virtual void Execute(vtkObject *caller,unsigned long event, - void *vtkNotUsed(callData)); - - protected: - - vtkViewImage2DCollectionCommand(); - ~vtkViewImage2DCollectionCommand(){}; - - private: - vtkViewImage2DCollection* Collection; - - double InitialWindow; - double InitialLevel; - -}; - - - - -#endif /* _vtkViewImage2DCollection_h_ */ diff --git a/branches/ColorViewer/ExternalCode/MegaVTK/vtkRenderingAddOn/vtkViewImage2DCommand.cxx b/branches/ColorViewer/ExternalCode/MegaVTK/vtkRenderingAddOn/vtkViewImage2DCommand.cxx deleted file mode 100644 index c156fe0c..00000000 --- a/branches/ColorViewer/ExternalCode/MegaVTK/vtkRenderingAddOn/vtkViewImage2DCommand.cxx +++ /dev/null @@ -1,336 +0,0 @@ -/*======================================================================== - Copyright (c) INRIA - ASCLEPIOS Project (http://www-sop.inria.fr/asclepios). - All rights reserved. - - Redistribution and use in source and binary forms, with or without - modification, are permitted provided that the following conditions are met: - - * Redistributions of source code must retain the above copyright notice, - this list of conditions and the following disclaimer. - - * Redistributions in binary form must reproduce the above copyright notice, - this list of conditions and the following disclaimer in the documentation - and/or other materials provided with the distribution. - - * Neither the name of INRIA or ASCLEPIOS, nor the names of any contributors - may be used to endorse or promote products derived from this software - without specific prior written permission. - - * Modified source versions must be plainly marked as such, and must not be - misrepresented as being the original software. - - THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDER AND CONTRIBUTORS ``AS IS'' - AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE - IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE - ARE DISCLAIMED. IN NO EVENT SHALL THE AUTHORS OR CONTRIBUTORS BE LIABLE FOR - ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL - DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR - SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER - CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, - OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE - OF THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE. - =========================================================================*/ - -/*========================================================================= - Modifications were made by the GoFigure Dev. Team. - while at Megason Lab, Systems biology, Harvard Medical school, 2009 - - Copyright (c) 2009, President and Fellows of Harvard College. - All rights reserved. - - Redistribution and use in source and binary forms, with or without - modification, are permitted provided that the following conditions are met: - - Redistributions of source code must retain the above copyright notice, - this list of conditions and the following disclaimer. - Redistributions in binary form must reproduce the above copyright notice, - this list of conditions and the following disclaimer in the documentation - and/or other materials provided with the distribution. - Neither the name of the President and Fellows of Harvard College - nor the names of its contributors may be used to endorse or promote - products derived from this software without specific prior written - permission. - - THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS - "AS IS" AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, - THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR - PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT OWNER OR CONTRIBUTORS - BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, - OR CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT - OF SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR PROFITS; - OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, - WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE - OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF - ADVISED OF THE POSSIBILITY OF SUCH DAMAGE. - - =========================================================================*/ - -#ifdef _MSC_VER -# pragma warning (disable : 4018) -#endif - -#include -#include -#include -#include -#include -#include -#include -#include - -#include "vtkViewImage2D.h" -#include "vtkInteractorStyleImage2D.h" - - -#include "vtkViewImage2DCommand.h" -#include "vtkInteractorStyleImage2D.h" - -#include -#include - - -vtkViewImage2DCommand::vtkViewImage2DCommand() : Viewer( 0 ) -{} - -void -vtkViewImage2DCommand::Execute( vtkObject* caller, - unsigned long event, - void* callData) -{ - vtkInteractorStyleImage2D *isi = - static_cast(caller); - - if (!isi || !this->Viewer || !this->Viewer->GetInput()) - { - return; - } - - // Reset - if (event == vtkCommand::ResetWindowLevelEvent) - { - this->Viewer->ResetWindowLevel(); - this->Viewer->Render(); - return; - } - // Reset - if (event == vtkViewImage2DCommand::ResetViewerEvent) - { - this->Viewer->Reset(); - this->Viewer->Render(); - return; - } - - // Start - if (event == vtkCommand::StartWindowLevelEvent) - { - this->InitialWindow = this->Viewer->GetColorWindow(); - this->InitialLevel = this->Viewer->GetColorLevel(); - return; - } - - // Adjust the window level here - if (event == vtkCommand::WindowLevelEvent) - { - this->Windowing( isi ); - return; - } - - if (event == vtkCommand::KeyPressEvent) - { - vtkRenderWindowInteractor *rwi = - this->Viewer->GetRenderWindow()->GetInteractor(); - - if (rwi->GetKeyCode() == 't') - { - this->Viewer->SetViewOrientation ( - (this->Viewer->GetViewOrientation()+1)%3 ); - this->Viewer->Render(); - } - else if (rwi->GetKeyCode() == 'i') - { - this->Viewer->SetInterpolate ((this->Viewer->GetInterpolate() + 1)%2); - this->Viewer->Render(); - } - - return; - } - - if (event == vtkViewImage2DCommand::EndSliceMoveEvent) - { - int step = isi->GetSliceStep(); - this->Viewer->SetSlice (this->Viewer->GetSlice()+step); - this->Viewer->Render(); - } - - if( event == vtkViewImage2DCommand::ZoomEvent ) - { - this->Zooming(); - } - - if( event == vtkViewImage2DCommand::PanEvent ) - { - this->Panning(); - } - - // Move - // Position Value requested - if (event == vtkViewImage2DCommand::InteractionEvent) - { - PrintInformation(); - } - - // Position requested - if (event == vtkViewImage2DCommand::RequestedPositionEvent) - { - double* position = this->Viewer->GetWorldCoordinatesFromDisplayPosition ( - isi->GetRequestedPosition ()); - this->Viewer->SetWorldCoordinates(position); - this->Viewer->Render(); - } -} - -void vtkViewImage2DCommand::Windowing( vtkInteractorStyleImage2D* isi ) -{ - int *size = this->Viewer->GetRenderWindow()->GetSize(); - double window = this->InitialWindow; - double level = this->InitialLevel; - - // Compute normalized delta - double dx = 4.0 * - (isi->GetWindowLevelCurrentPosition()[0] - - isi->GetWindowLevelStartPosition()[0]) / size[0]; - double dy = 4.0 * - (isi->GetWindowLevelStartPosition()[1] - - isi->GetWindowLevelCurrentPosition()[1]) / size[1]; - - // Scale by current values - if (fabs(window) > 0.01) - dx = dx * window; - else - dx = dx * (window < 0 ? -0.01 : 0.01); - if (fabs(level) > 0.01) - dy = dy * level; - else - dy = dy * (level < 0 ? -0.01 : 0.01); - - // Abs so that direction does not flip - if (window < 0.0) - dx = -1*dx; - if (level < 0.0) - dy = -1*dy; - - // Compute new window level - double newWindow = dx + window; - double newLevel = level - dy; - - // Stay away from zero and really - if (fabs(newWindow) < 0.01) - newWindow = 0.01*(newWindow < 0 ? -1 : 1); - if (fabs(newLevel) < 0.01) - newLevel = 0.01*(newLevel < 0 ? -1 : 1); - - this->Viewer->SetColorWindow(newWindow); - this->Viewer->SetColorLevel(newLevel); - this->Viewer->Render(); -} - -void vtkViewImage2DCommand::PrintInformation() -{ - vtkRenderWindowInteractor *rwi = - this->Viewer->GetRenderWindow()->GetInteractor(); - - double* pos = this->Viewer->GetWorldCoordinatesFromDisplayPosition ( - rwi->GetLastEventPosition ()); - - int* idx = this->Viewer->GetImageCoordinatesFromWorldCoordinates( pos ); - - int dims[3]; - this->Viewer->GetInput()->GetDimensions( dims ); - - double spacing[3]; - this->Viewer->GetInput()->GetSpacing( spacing ); - - std::ostringstream os; - ///TODO dims and spacing must be computed from the orientation of the - /// image. - os <<"Size: " <<"[ " <Viewer->GetSlice() <<" / " - <Viewer->GetSliceMax() - this->Viewer->GetSliceMin() <Viewer->GetCornerAnnotation()->SetText (2, os.str().c_str()); - - std::ostringstream os2; - os2 <<"Location: " <<"[ " <Viewer->GetValueAtPosition (pos); - this->Viewer->GetCornerAnnotation()->SetText (3, os2.str().c_str()); - this->Viewer->Render(); -} - - -void vtkViewImage2DCommand::Zooming( ) -{ - vtkRenderWindowInteractor *rwi = - this->Viewer->GetRenderWindow()->GetInteractor(); - - rwi->FindPokedRenderer( rwi->GetEventPosition()[0], - rwi->GetEventPosition()[1]); - - vtkRenderer* ren = this->Viewer->GetRenderer(); - - double *center = ren->GetCenter(); - int dy = rwi->GetEventPosition()[1] - rwi->GetLastEventPosition()[1]; - - double factor = static_cast(dy) / static_cast( center[1] ); - - double z = 1.; - z *= pow((double)1.1, factor); - - this->Viewer->SetZoom( z ); -} - - -void vtkViewImage2DCommand::Panning( ) -{ - vtkRenderWindowInteractor *rwi = - this->Viewer->GetRenderWindow()->GetInteractor(); - - double ViewFocus[4]; - double NewPickPoint[4]; - - // Calculate the focal depth since we'll be using it a lot - vtkRenderer* ren = this->Viewer->GetRenderer(); - vtkCamera* camera = ren->GetActiveCamera(); - camera->GetFocalPoint(ViewFocus); - - vtkInteractorObserver::ComputeWorldToDisplay( ren, - ViewFocus[0], ViewFocus[1], ViewFocus[2], ViewFocus); - - double focalDepth = ViewFocus[2]; - - vtkInteractorObserver::ComputeDisplayToWorld( ren, - rwi->GetEventPosition()[0], - rwi->GetEventPosition()[1], - focalDepth, - NewPickPoint ); - - // Get the current focal point and position - - camera->GetFocalPoint(ViewFocus); - - // Compute a translation vector, moving everything 1/10 - // the distance to the cursor. (Arbitrary scale factor) - - double MotionVector[3]; - MotionVector[0] = 0.01 * (ViewFocus[0] - NewPickPoint[0]); - MotionVector[1] = 0.01 * (ViewFocus[1] - NewPickPoint[1]); - MotionVector[2] = 0.01 * (ViewFocus[2] - NewPickPoint[2]); - - this->Viewer->SetCameraMotionVector( MotionVector ); -} diff --git a/branches/ColorViewer/ExternalCode/MegaVTK/vtkRenderingAddOn/vtkViewImage2DCommand.h b/branches/ColorViewer/ExternalCode/MegaVTK/vtkRenderingAddOn/vtkViewImage2DCommand.h deleted file mode 100644 index a48dd42e..00000000 --- a/branches/ColorViewer/ExternalCode/MegaVTK/vtkRenderingAddOn/vtkViewImage2DCommand.h +++ /dev/null @@ -1,127 +0,0 @@ -/*======================================================================== - Copyright (c) INRIA - ASCLEPIOS Project (http://www-sop.inria.fr/asclepios). - All rights reserved. - - Redistribution and use in source and binary forms, with or without - modification, are permitted provided that the following conditions are met: - - * Redistributions of source code must retain the above copyright notice, - this list of conditions and the following disclaimer. - - * Redistributions in binary form must reproduce the above copyright notice, - this list of conditions and the following disclaimer in the documentation - and/or other materials provided with the distribution. - - * Neither the name of INRIA or ASCLEPIOS, nor the names of any contributors - may be used to endorse or promote products derived from this software - without specific prior written permission. - - * Modified source versions must be plainly marked as such, and must not be - misrepresented as being the original software. - - THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDER AND CONTRIBUTORS ``AS IS'' - AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE - IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE - ARE DISCLAIMED. IN NO EVENT SHALL THE AUTHORS OR CONTRIBUTORS BE LIABLE FOR - ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL - DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR - SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER - CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, - OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE - OF THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE. - =========================================================================*/ - -/*========================================================================= - Modifications were made by the GoFigure Dev. Team. - while at Megason Lab, Systems biology, Harvard Medical school, 2009 - - Copyright (c) 2009, President and Fellows of Harvard College. - All rights reserved. - - Redistribution and use in source and binary forms, with or without - modification, are permitted provided that the following conditions are met: - - Redistributions of source code must retain the above copyright notice, - this list of conditions and the following disclaimer. - Redistributions in binary form must reproduce the above copyright notice, - this list of conditions and the following disclaimer in the documentation - and/or other materials provided with the distribution. - Neither the name of the President and Fellows of Harvard College - nor the names of its contributors may be used to endorse or promote - products derived from this software without specific prior written - permission. - - THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS - "AS IS" AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, - THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR - PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT OWNER OR CONTRIBUTORS - BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, - OR CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT - OF SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR PROFITS; - OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, - WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE - OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF - ADVISED OF THE POSSIBILITY OF SUCH DAMAGE. - - =========================================================================*/ - -#ifndef _vtkViewImage2DCommand_h_ -#define _vtkViewImage2DCommand_h_ - -#include - -class vtkInteractorStyleImage2D; -class vtkInteractorStyleImage; -class vtkViewImage2D; - -class vtkViewImage2DCommand : public vtkCommand -{ - public: - - static vtkViewImage2DCommand* New() - { return new vtkViewImage2DCommand; } - - //BTX - enum EventIds - { - SliceMoveEvent=(vtkCommand::UserEvent+1), - StartSliceMoveEvent, - EndSliceMoveEvent, - ZoomEvent, - PanEvent, - RequestedPositionEvent, - ResetViewerEvent - }; - //ETX - - - - // Description: - // Satisfy the superclass API for callbacks. Recall that the caller is - // the instance invoking the event; eid is the event id (see - // vtkCommand.h); and calldata is information sent when the callback - // was invoked (e.g., progress value in the vtkCommand::ProgressEvent). - virtual void Execute(vtkObject *caller,unsigned long event, - void *vtkNotUsed(callData)); - - void SetViewer(vtkViewImage2D *viewer) - { this->Viewer = viewer; } - - protected: - vtkViewImage2DCommand(); - ~vtkViewImage2DCommand(){}; - - void Windowing( vtkInteractorStyleImage2D* isi ); - void Zooming(); - void Panning(); - void PrintInformation(); - - private: - vtkViewImage2D* Viewer; - double InitialWindow; - double InitialLevel; - int InitialSlice; - -}; - -#endif diff --git a/branches/ColorViewer/ExternalCode/MegaVTK/vtkRenderingAddOn/vtkViewImage2DWithContourWidget.cxx b/branches/ColorViewer/ExternalCode/MegaVTK/vtkRenderingAddOn/vtkViewImage2DWithContourWidget.cxx deleted file mode 100644 index 10eaec9f..00000000 --- a/branches/ColorViewer/ExternalCode/MegaVTK/vtkRenderingAddOn/vtkViewImage2DWithContourWidget.cxx +++ /dev/null @@ -1,249 +0,0 @@ -/*======================================================================== - Copyright (c) INRIA - ASCLEPIOS Project (http://www-sop.inria.fr/asclepios). - All rights reserved. - - Redistribution and use in source and binary forms, with or without - modification, are permitted provided that the following conditions are met: - - * Redistributions of source code must retain the above copyright notice, - this list of conditions and the following disclaimer. - - * Redistributions in binary form must reproduce the above copyright notice, - this list of conditions and the following disclaimer in the documentation - and/or other materials provided with the distribution. - - * Neither the name of INRIA or ASCLEPIOS, nor the names of any contributors - may be used to endorse or promote products derived from this software - without specific prior written permission. - - * Modified source versions must be plainly marked as such, and must not be - misrepresented as being the original software. - - THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDER AND CONTRIBUTORS ``AS IS'' - AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE - IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE - ARE DISCLAIMED. IN NO EVENT SHALL THE AUTHORS OR CONTRIBUTORS BE LIABLE FOR - ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL - DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR - SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER - CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, - OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE - OF THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE. - =========================================================================*/ - -/*========================================================================= - Modifications were made by the GoFigure Dev. Team. - while at Megason Lab, Systems biology, Harvard Medical school, 2009 - - Copyright (c) 2009, President and Fellows of Harvard College. - All rights reserved. - - Redistribution and use in source and binary forms, with or without - modification, are permitted provided that the following conditions are met: - - Redistributions of source code must retain the above copyright notice, - this list of conditions and the following disclaimer. - Redistributions in binary form must reproduce the above copyright notice, - this list of conditions and the following disclaimer in the documentation - and/or other materials provided with the distribution. - Neither the name of the President and Fellows of Harvard College - nor the names of its contributors may be used to endorse or promote - products derived from this software without specific prior written - permission. - - THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS - "AS IS" AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, - THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR - PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT OWNER OR CONTRIBUTORS - BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, - OR CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT - OF SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR PROFITS; - OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, - WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE - OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF - ADVISED OF THE POSSIBILITY OF SUCH DAMAGE. - - =========================================================================*/ - -#include "vtkViewImage2DWithContourWidget.h" - -#include -#include -#include -#include -#include -#include -#include - -#include "vtkFillImageWithPolyData.h" - -vtkCxxRevisionMacro(vtkViewImage2DWithContourWidget, "$Revision 1$"); -vtkStandardNewMacro(vtkViewImage2DWithContourWidget); - - -vtkViewImage2DWithContourWidget::vtkViewImage2DWithContourWidget() -{ - this->ContourWidgetEnabled = false; - - this->ContourRepresentation = vtkOrientedGlyphContourRepresentation::New(); - - this->ContourWidget = vtkContourWidget::New(); - this->ContourWidget->SetPriority( 10.0 ); - - this->CornerAnnotation->SetText( 1, "Tracer OFF"); - - this->CurrentLabel = 1; - - this->LUT = vtkLookupTable::New(); - this->LUT->SetNumberOfTableValues( 256 ); - - this->LUT->SetTableValue (1, 1.0, 0.0, 0.0, 0.5); - this->LUT->SetTableValue (2, 0.0, 1.0, 0.0, 0.5); - this->LUT->SetTableValue (3, 0.0, 0.0, 1.0, 0.5); - this->LUT->SetTableValue (4, 1.0, 1.0, 0.0, 0.5); - this->LUT->SetTableValue (5, 0.0, 1.0, 1.0, 0.5); - this->LUT->SetTableValue (6, 1.0, 0.0, 1.0, 0.5); - - double d_id; - for( int i = 7; i < 256; i++ ) - { - d_id = static_cast< double >( i ); - if( i % 3 == 0 ) - { - this->LUT->SetTableValue( i, - ( 200. * ( 84.0 - d_id ) / 85. + 50. ) / 255., - ( 200. * d_id / 85. + 50. ) / 255., - 0., - 0.5); - } - else - { - if( i % 3 == 1 ) - { - this->LUT->SetTableValue( i, - 0, - ( ( 169. - d_id ) / 85. * 200. + 50. ) / 255., - ( ( d_id - 85. ) / 85. * 200. + 50. ) / 255., - 0.5 ); - } - else - { - this->LUT->SetTableValue( i, - ( ( d_id -170. ) / 85.0 * 200.0 + 50. ) / 255.0, - 0.0, - ( ( 255.0 - d_id ) / 85.0 * 200.0 + 50. ) /255.0, - 0.5); - } - } - } -} - -vtkViewImage2DWithContourWidget::~vtkViewImage2DWithContourWidget() -{ - this->ContourRepresentation->Delete(); - this->ContourWidget->Delete(); - this->LUT->Delete(); -} - -void vtkViewImage2DWithContourWidget::SetupInteractor( - vtkRenderWindowInteractor* arg ) -{ - vtkViewImage2D::SetupInteractor( arg ); - if( arg ) - { - this->ContourWidget->SetInteractor( arg ); - } -} - -void vtkViewImage2DWithContourWidget::SetInput( vtkImageData* image ) -{ - vtkViewImage2D::SetInput( image ); - if( image ) - { - vtkImageActorPointPlacer* point_placer = vtkImageActorPointPlacer::New(); - point_placer->SetImageActor( this->GetImageActor() ); - - this->ContourRepresentation->SetPointPlacer( point_placer ); - this->ContourWidget->SetRepresentation(this->ContourRepresentation); - - point_placer->Delete(); - this->SetContourWidgetInteractionOff(); - } -} - -void vtkViewImage2DWithContourWidget::ValidateTracing() -{ - vtkImageData* input = this->GetInput(); - - if( !input ) - { - return; - } - - vtkPolyData* contour = - this->ContourRepresentation->GetContourRepresentationAsPolyData( ); - - if( !contour || contour->GetNumberOfPoints()<3 ) - { - return; - } - - double val = this->CurrentLabel; - - vtkFillImageWithPolyData* filler = vtkFillImageWithPolyData::New(); - filler->SetInput ( input ); - filler->SetExtractionDirection( this->ViewOrientation ); - filler->SetPolyData( contour ); - filler->SetInsidePixelValue (val); - filler->Update(); - - this->Tracing = this->GetMaskImage(); - - // must check if the dimensions of the image match the dimensions of - // the tracing - if( this->Tracing ) - { - int* dims1 = this->Tracing->GetDimensions(); - int* dims2 = input->GetDimensions(); - if( (dims1[0]!=dims2[0]) || (dims1[1]!=dims2[1]) || (dims1[2]!=dims2[2]) ) - { - // I set to 0 the previous tracing - this->Tracing = 0; - } - } - - - // the output of the filler is merged with the previous tracing, if any - if( this->Tracing ) - { - // do the merging myself - unsigned long numPoints = this->Tracing->GetNumberOfPoints(); - unsigned char* buff1 = (unsigned char*)( this->Tracing->GetScalarPointer() ); - unsigned char* buff2 = (unsigned char*)( - filler->GetOutput()->GetScalarPointer() ); - unsigned char u_char_0 = static_cast< unsigned char >( 0 ); - unsigned char u_char_255 = static_cast< unsigned char >( 255 ); - - for( unsigned long i=0; i u_char_0 ) - *buff1 = *buff2; - } - - this->Tracing->Modified(); - } - else - { - this->Tracing = vtkImageData::New(); - this->Tracing->DeepCopy ( filler->GetOutput() ); - this->Tracing->SetOrigin( input->GetOrigin() ); - - this->SetMaskImage( this->Tracing, this->LUT, true ); - this->Tracing->Delete(); - this->ContourWidget->Initialize( 0 ); - } - - filler->Delete(); -} diff --git a/branches/ColorViewer/ExternalCode/MegaVTK/vtkRenderingAddOn/vtkViewImage2DWithContourWidget.h b/branches/ColorViewer/ExternalCode/MegaVTK/vtkRenderingAddOn/vtkViewImage2DWithContourWidget.h deleted file mode 100644 index c0597701..00000000 --- a/branches/ColorViewer/ExternalCode/MegaVTK/vtkRenderingAddOn/vtkViewImage2DWithContourWidget.h +++ /dev/null @@ -1,132 +0,0 @@ -/*======================================================================== - Copyright (c) INRIA - ASCLEPIOS Project (http://www-sop.inria.fr/asclepios). - All rights reserved. - - Redistribution and use in source and binary forms, with or without - modification, are permitted provided that the following conditions are met: - - * Redistributions of source code must retain the above copyright notice, - this list of conditions and the following disclaimer. - - * Redistributions in binary form must reproduce the above copyright notice, - this list of conditions and the following disclaimer in the documentation - and/or other materials provided with the distribution. - - * Neither the name of INRIA or ASCLEPIOS, nor the names of any contributors - may be used to endorse or promote products derived from this software - without specific prior written permission. - - * Modified source versions must be plainly marked as such, and must not be - misrepresented as being the original software. - - THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDER AND CONTRIBUTORS ``AS IS'' - AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE - IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE - ARE DISCLAIMED. IN NO EVENT SHALL THE AUTHORS OR CONTRIBUTORS BE LIABLE FOR - ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL - DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR - SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER - CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, - OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE - OF THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE. - =========================================================================*/ - -/*========================================================================= - Modifications were made by the GoFigure Dev. Team. - while at Megason Lab, Systems biology, Harvard Medical school, 2009 - - Copyright (c) 2009, President and Fellows of Harvard College. - All rights reserved. - - Redistribution and use in source and binary forms, with or without - modification, are permitted provided that the following conditions are met: - - Redistributions of source code must retain the above copyright notice, - this list of conditions and the following disclaimer. - Redistributions in binary form must reproduce the above copyright notice, - this list of conditions and the following disclaimer in the documentation - and/or other materials provided with the distribution. - Neither the name of the President and Fellows of Harvard College - nor the names of its contributors may be used to endorse or promote - products derived from this software without specific prior written - permission. - - THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS - "AS IS" AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, - THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR - PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT OWNER OR CONTRIBUTORS - BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, - OR CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT - OF SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR PROFITS; - OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, - WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE - OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF - ADVISED OF THE POSSIBILITY OF SUCH DAMAGE. - - =========================================================================*/ - -#ifndef __vtkViewImage2DWithContourWidget_h -#define __vtkViewImage2DWithContourWidget_h - -#include "vtkViewImage2D.h" -#include -#include -#include -#include - -class vtkViewImage2DWithContourWidget : public vtkViewImage2D -{ -public: - static vtkViewImage2DWithContourWidget* New(); - vtkTypeRevisionMacro( vtkViewImage2DWithContourWidget, vtkViewImage2D ); - - virtual void SetupInteractor( vtkRenderWindowInteractor* ); - - void SetContourWidgetInteractionOn( ) - { - this->ContourWidgetEnabled = true; - this->ContourWidget->On(); - this->CornerAnnotation->SetText( 1, "Tracer ON"); - } - void SetContourWidgetInteractionOff( ) - { - this->ContourWidgetEnabled = false; - this->ContourWidget->Off(); - this->CornerAnnotation->SetText( 1, "Tracer OFF"); - } - void SetContourWidgetInteraction( const bool& iState ) - { - if( iState ) - this->SetContourWidgetInteractionOn(); - else - this->SetContourWidgetInteractionOff(); - } - - vtkSetMacro( CurrentLabel, unsigned int ); - vtkGetMacro( CurrentLabel, unsigned int ); - - vtkGetMacro( ContourWidgetEnabled, bool ); - vtkGetObjectMacro( ContourWidget, vtkContourWidget ); - vtkGetObjectMacro( ContourRepresentation, - vtkOrientedGlyphContourRepresentation ); - virtual void SetInput( vtkImageData* image ); - - void ValidateTracing(); - -protected: - vtkViewImage2DWithContourWidget(); - ~vtkViewImage2DWithContourWidget(); - - unsigned int CurrentLabel; - bool ContourWidgetEnabled; - vtkOrientedGlyphContourRepresentation* ContourRepresentation; - vtkContourWidget* ContourWidget; - vtkLookupTable* LUT; - vtkImageData* Tracing; - -private: - vtkViewImage2DWithContourWidget( const vtkViewImage2DWithContourWidget& ); - void operator = ( const vtkViewImage2DWithContourWidget& ); -}; - -#endif diff --git a/branches/ColorViewer/ExternalCode/MegaVTK/vtkRenderingAddOn/vtkViewImage2DWithContourWidgetCollection.cxx b/branches/ColorViewer/ExternalCode/MegaVTK/vtkRenderingAddOn/vtkViewImage2DWithContourWidgetCollection.cxx deleted file mode 100644 index 1b59919c..00000000 --- a/branches/ColorViewer/ExternalCode/MegaVTK/vtkRenderingAddOn/vtkViewImage2DWithContourWidgetCollection.cxx +++ /dev/null @@ -1,423 +0,0 @@ -/*======================================================================== - Copyright (c) INRIA - ASCLEPIOS Project (http://www-sop.inria.fr/asclepios). - All rights reserved. - - Redistribution and use in source and binary forms, with or without - modification, are permitted provided that the following conditions are met: - - * Redistributions of source code must retain the above copyright notice, - this list of conditions and the following disclaimer. - - * Redistributions in binary form must reproduce the above copyright notice, - this list of conditions and the following disclaimer in the documentation - and/or other materials provided with the distribution. - - * Neither the name of INRIA or ASCLEPIOS, nor the names of any contributors - may be used to endorse or promote products derived from this software - without specific prior written permission. - - * Modified source versions must be plainly marked as such, and must not be - misrepresented as being the original software. - - THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDER AND CONTRIBUTORS ``AS IS'' - AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE - IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE - ARE DISCLAIMED. IN NO EVENT SHALL THE AUTHORS OR CONTRIBUTORS BE LIABLE FOR - ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL - DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR - SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER - CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, - OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE - OF THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE. - =========================================================================*/ - -/*========================================================================= - Modifications were made by the GoFigure Dev. Team. - while at Megason Lab, Systems biology, Harvard Medical school, 2009 - - Copyright (c) 2009, President and Fellows of Harvard College. - All rights reserved. - - Redistribution and use in source and binary forms, with or without - modification, are permitted provided that the following conditions are met: - - Redistributions of source code must retain the above copyright notice, - this list of conditions and the following disclaimer. - Redistributions in binary form must reproduce the above copyright notice, - this list of conditions and the following disclaimer in the documentation - and/or other materials provided with the distribution. - Neither the name of the President and Fellows of Harvard College - nor the names of its contributors may be used to endorse or promote - products derived from this software without specific prior written - permission. - - THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS - "AS IS" AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, - THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR - PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT OWNER OR CONTRIBUTORS - BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, - OR CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT - OF SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR PROFITS; - OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, - WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE - OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF - ADVISED OF THE POSSIBILITY OF SUCH DAMAGE. - - =========================================================================*/ - -#include "vtkViewImage2DWithContourWidgetCollection.h" - -#include -#include -#include -#include -#include -#include -#include -#include -#include -#include -#include - -#include "vtkViewImage2DCommand.h" - -vtkCxxRevisionMacro(vtkViewImage2DWithContourWidgetCollection, "$Revision: 1 $"); -vtkStandardNewMacro(vtkViewImage2DWithContourWidgetCollection); - -vtkViewImage2DWithContourWidgetCollection:: -vtkViewImage2DWithContourWidgetCollection( ) -{ - this->Command = vtkViewImage2DWithContourWidgetCollectionCommand::New(); - this->Command->SetCollection( this ); -} - -vtkViewImage2DWithContourWidgetCollection:: -~vtkViewImage2DWithContourWidgetCollection() -{ - this->Command->Delete(); -} - -void -vtkViewImage2DWithContourWidgetCollection:: -AddItem( vtkViewImage2DWithContourWidget* a ) -{ - this->Superclass::AddItem (a); - a->GetInteractorStyle()->RemoveObservers( - vtkCommand::ResetWindowLevelEvent ); - a->GetInteractorStyle()->RemoveObservers( - vtkViewImage2DCommand::SliceMoveEvent ); - a->GetInteractorStyle()->RemoveObservers( - vtkViewImage2DCommand::ResetViewerEvent ); - a->GetInteractorStyle()->RemoveObservers( vtkViewImage2DCommand:: - RequestedPositionEvent ); - - a->GetInteractorStyle()->AddObserver( vtkCommand::ResetWindowLevelEvent, - this->Command ); - a->GetInteractorStyle()->AddObserver( vtkCommand::WindowLevelEvent, - this->Command ); - a->GetInteractorStyle()->AddObserver( - vtkViewImage2DCommand::SliceMoveEvent, - this->Command ); - a->GetInteractorStyle()->AddObserver( - vtkViewImage2DCommand::ZoomEvent, - this->Command ); - a->GetInteractorStyle()->AddObserver( - vtkViewImage2DCommand::PanEvent, - this->Command ); - a->GetInteractorStyle()->AddObserver( - vtkViewImage2DCommand::RequestedPositionEvent, - this->Command ); - a->GetInteractorStyle()->AddObserver( - vtkViewImage2DCommand::ResetViewerEvent, - this->Command ); -} - - -void -vtkViewImage2DWithContourWidgetCollection:: -ReplaceItem( int i, vtkViewImage2DWithContourWidget* a ) -{ - this->Superclass::ReplaceItem( i, a ); -} - -void -vtkViewImage2DWithContourWidgetCollection:: -RemoveItem( int i ) -{ - this->Superclass::RemoveItem( i ); -} - -void -vtkViewImage2DWithContourWidgetCollection:: -RemoveItem( vtkViewImage2DWithContourWidget* a ) -{ - this->Superclass::RemoveItem( a ); -} - -void -vtkViewImage2DWithContourWidgetCollection:: -RemoveAllItems() -{ - this->Superclass::RemoveAllItems(); -} - -void -vtkViewImage2DWithContourWidgetCollection:: -Initialize() -{ - vtkProperty* plane_property = vtkProperty::New(); - plane_property->SetRepresentationToWireframe(); - - for (int i=0; iGetNumberOfItems(); i++) - { - for (int j=0; jGetNumberOfItems(); j++) - { - this->GetItem( j )->AddDataSet( - static_cast( this->GetItem( i )->GetSlicePlane() ), - plane_property, ( i != j ) ); - } - } - plane_property->Delete(); -} - - -void vtkViewImage2DWithContourWidgetCollection:: -SyncSetBackground( double* rgb ) -{ - this->InitTraversal(); - vtkViewImage2DWithContourWidget* item = this->GetNextItem(); - while(item) - { - item->SetBackground( rgb ); - item = this->GetNextItem(); - } - if (this->ExtraRenderWindow) - { - vtkRenderer* ren = - this->ExtraRenderWindow->GetRenderers()->GetFirstRenderer(); - ren->SetBackground( rgb ); - } -} - -void vtkViewImage2DWithContourWidgetCollection:: -SyncRender(void) -{ - this->InitTraversal(); - vtkViewImage2DWithContourWidget* item = this->GetNextItem(); - while(item) - { - item->Render (); - item = this->GetNextItem(); - } - if (this->ExtraRenderWindow) - this->ExtraRenderWindow->Render(); -} - - -void vtkViewImage2DWithContourWidgetCollection:: -SyncReset(void) -{ - this->InitTraversal(); - vtkViewImage2DWithContourWidget* item = this->GetNextItem(); - while(item) - { - item->Reset (); - item = this->GetNextItem(); - } -} - -void vtkViewImage2DWithContourWidgetCollection:: -SyncResetWindowLevel(void) -{ - this->InitTraversal(); - vtkViewImage2DWithContourWidget* item = this->GetNextItem(); - while(item) - { - item->ResetWindowLevel (); - item = this->GetNextItem(); - } -} - -void vtkViewImage2DWithContourWidgetCollection:: -SyncMaskImage( void ) -{ - for (int i=0; iGetNumberOfItems(); i++) - { - vtkImageData* mask = this->GetItem(i)->GetMaskImage(); - vtkLookupTable* lut = this->GetItem(i)->GetMaskLUT(); - - std::cout <GetNumberOfItems(); j++) - { - this->GetItem(j)->SetMaskImage( mask, lut, ( i == j ) ); - } - } -} - -void vtkViewImage2DWithContourWidgetCollection:: -SyncMaskImage( vtkImageData* mask, vtkLookupTable* lut ) -{ - this->InitTraversal(); - vtkViewImage2DWithContourWidget* item = this->GetNextItem(); - while(item) - { - item->SetMaskImage( mask, lut, true ); - item = this->GetNextItem(); - } -} -//---------------------------------------------------------------------------- -void vtkViewImage2DWithContourWidgetCollection:: -SyncPan() -{ - this->InitTraversal(); - vtkViewImage2DWithContourWidget* item = this->GetNextItem(); - while(item) - { - item = this->GetNextItem(); - } -} - -void vtkViewImage2DWithContourWidgetCollection:: -SyncSetZoomAndParallelScale( double Zoom, double ParallelScale ) -{ - this->InitTraversal(); - vtkViewImage2DWithContourWidget* item = this->GetNextItem(); - double t = ParallelScale / Zoom; - while(item) - { - item->SetZoom( Zoom ); - item->GetRenderer()->GetActiveCamera()->SetParallelScale( t ); - - if( item->GetInteractorStyle()->GetInteractor()->GetLightFollowCamera() ) - { - item->GetRenderer()->UpdateLightsGeometryToFollowCamera(); - } - item->Render(); - item = this->GetNextItem(); - } -} - -//---------------------------------------------------------------------------- -vtkViewImage2DWithContourWidgetCollectionCommand:: -vtkViewImage2DWithContourWidgetCollectionCommand () -{ -} - -//---------------------------------------------------------------------------- -void -vtkViewImage2DWithContourWidgetCollectionCommand::SetCollection( -vtkViewImage2DWithContourWidgetCollection* p) -{ - this->Collection = p; -} - -//---------------------------------------------------------------------------- -void vtkViewImage2DWithContourWidgetCollectionCommand::Execute(vtkObject *caller, - unsigned long event, - void *vtkNotUsed(callData)) -{ - if (!this->Collection) - return; - - vtkInteractorStyleImage2D *isi = - vtkInteractorStyleImage2D::SafeDownCast(caller); - this->GetCollection()->InitTraversal(); - vtkViewImage2DWithContourWidget* v = this->GetCollection()->GetNextItem(); - vtkViewImage2DWithContourWidget* viewer = NULL; - while(v) - { - if (isi == v->GetInteractorStyle()) - viewer = v; - v = this->GetCollection()->GetNextItem(); - } - - if (!isi || !viewer || !viewer->GetInput()) - return; - - if( !viewer->GetContourWidgetEnabled() ) - { - // Reset - if (event == vtkCommand::ResetWindowLevelEvent) - { - this->Collection->SyncResetWindowLevel(); - this->Collection->SyncRender(); - return; - } - // Reset - if (event == vtkViewImage2DCommand::ResetViewerEvent) - { - this->Collection->SyncReset(); - this->Collection->SyncRender(); - return; - } - - // Adjust the window level here - if (event == vtkCommand::WindowLevelEvent) - { - this->Collection->SyncSetColorWindow(viewer->GetColorWindow()); - this->Collection->SyncSetColorLevel(viewer->GetColorLevel()); - this->Collection->SyncRender(); - } - - // Move - if (event == vtkViewImage2DCommand::SliceMoveEvent) - { - // do not synchronize this, but render all - this->Collection->SyncRender(); - } - - if( event == vtkViewImage2DCommand::ZoomEvent ) - { - double z = viewer->GetZoom(); - double parallel_scale = - viewer->GetRenderer()->GetActiveCamera()->GetParallelScale(); - - this->Collection->SyncSetZoomAndParallelScale( z, parallel_scale ); - } - - if( event == vtkViewImage2DCommand::PanEvent ) - { - double motion[3]; - viewer->GetCameraMotionVector( motion ); - - this->GetCollection()->InitTraversal(); - v = this->GetCollection()->GetNextItem(); - double focal[3], pos[3], n[3]; - double dot = 0., u; - - while(v) - { - v->GetCameraFocalAndPosition( focal, pos ); - v->GetRenderer()->GetActiveCamera()->GetViewPlaneNormal( n ); - dot = vtkMath::Dot( n, motion ); - - for( int dim = 0; dim < 3; dim++ ) - { - u = motion[dim] - dot * n[dim]; - focal[dim] += u; - pos[dim] += u; - } - v->SetCameraFocalAndPosition( focal, pos ); - - if( v->GetInteractorStyle()->GetInteractor()->GetLightFollowCamera() ) - { - v->GetRenderer()->UpdateLightsGeometryToFollowCamera(); - } - v->Render(); - v = this->GetCollection()->GetNextItem(); - } - } - // Position requested - if (event == vtkViewImage2DCommand::RequestedPositionEvent) - { - double* position = viewer->GetWorldCoordinatesFromDisplayPosition ( - isi->GetRequestedPosition ()); - this->Collection->SyncSetWorldCoordinates(position); - this->Collection->SyncRender(); - } - } -} - - - diff --git a/branches/ColorViewer/ExternalCode/MegaVTK/vtkRenderingAddOn/vtkViewImage2DWithContourWidgetCollection.h b/branches/ColorViewer/ExternalCode/MegaVTK/vtkRenderingAddOn/vtkViewImage2DWithContourWidgetCollection.h deleted file mode 100644 index 3e3243b6..00000000 --- a/branches/ColorViewer/ExternalCode/MegaVTK/vtkRenderingAddOn/vtkViewImage2DWithContourWidgetCollection.h +++ /dev/null @@ -1,214 +0,0 @@ -/*======================================================================== - Copyright (c) INRIA - ASCLEPIOS Project (http://www-sop.inria.fr/asclepios). - All rights reserved. - - Redistribution and use in source and binary forms, with or without - modification, are permitted provided that the following conditions are met: - - * Redistributions of source code must retain the above copyright notice, - this list of conditions and the following disclaimer. - - * Redistributions in binary form must reproduce the above copyright notice, - this list of conditions and the following disclaimer in the documentation - and/or other materials provided with the distribution. - - * Neither the name of INRIA or ASCLEPIOS, nor the names of any contributors - may be used to endorse or promote products derived from this software - without specific prior written permission. - - * Modified source versions must be plainly marked as such, and must not be - misrepresented as being the original software. - - THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDER AND CONTRIBUTORS ``AS IS'' - AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE - IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE - ARE DISCLAIMED. IN NO EVENT SHALL THE AUTHORS OR CONTRIBUTORS BE LIABLE FOR - ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL - DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR - SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER - CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, - OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE - OF THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE. - =========================================================================*/ - -/*========================================================================= - Modifications were made by the GoFigure Dev. Team. - while at Megason Lab, Systems biology, Harvard Medical school, 2009 - - Copyright (c) 2009, President and Fellows of Harvard College. - All rights reserved. - - Redistribution and use in source and binary forms, with or without - modification, are permitted provided that the following conditions are met: - - Redistributions of source code must retain the above copyright notice, - this list of conditions and the following disclaimer. - Redistributions in binary form must reproduce the above copyright notice, - this list of conditions and the following disclaimer in the documentation - and/or other materials provided with the distribution. - Neither the name of the President and Fellows of Harvard College - nor the names of its contributors may be used to endorse or promote - products derived from this software without specific prior written - permission. - - THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS - "AS IS" AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, - THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR - PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT OWNER OR CONTRIBUTORS - BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, - OR CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT - OF SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR PROFITS; - OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, - WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE - OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF - ADVISED OF THE POSSIBILITY OF SUCH DAMAGE. - - =========================================================================*/ - -#ifndef __vtkViewImage2DWithContourWidgetCollection_h -#define __vtkViewImage2DWithContourWidgetCollection_h - -#include -#include - -#include "vtkViewImage2DCollection.h" -#include "vtkViewImage2DWithContourWidget.h" - -class vtkViewImage2DWithContourWidgetCollectionCommand; - -class vtkViewImage2DWithContourWidgetCollection : -public vtkCollection -{ -public: - static vtkViewImage2DWithContourWidgetCollection* New(); - vtkTypeRevisionMacro( vtkViewImage2DWithContourWidgetCollection, - vtkCollection ); - - // Description: - // Get the next vtkViewImage2D in the list. Return NULL when at the end of the - // list. - vtkViewImage2DWithContourWidget *GetNextItem() { - return static_cast( - this->GetNextItemAsObject() );}; - // Description: - // Get the next vtkViewImage2D2D in the list. Return NULL when at the end of - // the list. - vtkViewImage2DWithContourWidget *GetItem(int i) { - return static_cast( - this->GetItemAsObject(i) );}; - // Description: - // Add an object to the list. Does not prevent duplicate entries. - void AddItem(vtkViewImage2DWithContourWidget*); - - // Description: - // Replace the i'th item in the collection with a - void ReplaceItem(int i, vtkViewImage2DWithContourWidget *); - - // Description: - // Remove the i'th item in the list. - // Be careful if using this function during traversal of the list using - // GetNextItemAsObject (or GetNextItem in derived class). The list WILL - // be shortened if a valid index is given! If this->Current is equal to the - // element being removed, have it point to then next element in the list. - void RemoveItem(int i); - - // Description: - // Remove an object from the list. Removes the first object found, not - // all occurrences. If no object found, list is unaffected. See warning - // in description of RemoveItem(int). - void RemoveItem(vtkViewImage2DWithContourWidget *); - - // Description: - // Remove all objects from the list. - void RemoveAllItems(); - - // Description: - // Initialize the viewers togethers. - void Initialize(void); - - vtkGetObjectMacro (ExtraRenderWindow, vtkRenderWindow); - void SetExtraRenderWindow (vtkRenderWindow* win) - { this->ExtraRenderWindow = win; } - - vtkSyncSetMacro (Slice, int, vtkViewImage2DWithContourWidget ); - vtkSyncSetMacro (SliceOrientation, int, vtkViewImage2DWithContourWidget); - vtkSyncSetMacro (ShowAnnotations, int, vtkViewImage2DWithContourWidget); - vtkSyncSetMacro (ShowScalarBar, int, vtkViewImage2DWithContourWidget); - - vtkSyncSetMacro (ColorWindow, double, vtkViewImage2DWithContourWidget); - vtkSyncSetMacro (ColorLevel, double, vtkViewImage2DWithContourWidget); - - - vtkSyncSetObjectMacro (OrientationMatrix, vtkMatrix4x4, - vtkViewImage2DWithContourWidget); - vtkSyncSetObjectMacro (LookupTable, vtkLookupTable, - vtkViewImage2DWithContourWidget); - vtkSyncSetObjectMacro (TextProperty, vtkTextProperty, - vtkViewImage2DWithContourWidget); - vtkSyncSetObjectMacro (Input, vtkImageData, vtkViewImage2DWithContourWidget); - vtkSyncSetObjectMacro (InputConnection, vtkAlgorithmOutput, - vtkViewImage2DWithContourWidget); - - vtkSyncSetObjectMacro (Size, int, vtkViewImage2DWithContourWidget); - vtkSyncSetObjectMacro (Position, int, vtkViewImage2DWithContourWidget); - vtkSyncSetObjectMacro (WorldCoordinates, double, - vtkViewImage2DWithContourWidget); - - void SyncSetBackground( double* rgb ); - void SyncRender (void); - void SyncResetWindowLevel (void); - void SyncReset (void); - void SyncPan (void); - void SyncMaskImage( void ); - void SyncMaskImage( vtkImageData* mask, vtkLookupTable* lut ); - void SyncSetZoomAndParallelScale( double Zoom, double ParallelScale ); - -protected: - vtkViewImage2DWithContourWidgetCollection(); - ~vtkViewImage2DWithContourWidgetCollection(); - - vtkViewImage2DWithContourWidgetCollectionCommand* Command; - vtkRenderWindow* ExtraRenderWindow; - -private: - vtkViewImage2DWithContourWidgetCollection( - const vtkViewImage2DWithContourWidgetCollection& ); - void operator = ( const vtkViewImage2DWithContourWidgetCollection& ); -}; - - -class vtkViewImage2DWithContourWidgetCollectionCommand -: public vtkCommand -{ - - public: - - static vtkViewImage2DWithContourWidgetCollectionCommand *New() - {return new vtkViewImage2DWithContourWidgetCollectionCommand;}; - - vtkViewImage2DWithContourWidgetCollection* GetCollection (void) - { return this->Collection;}; - void SetCollection( vtkViewImage2DWithContourWidgetCollection* p ); - - // Description: - // Satisfy the superclass API for callbacks. Recall that the caller is - // the instance invoking the event; eid is the event id (see - // vtkCommand.h); and calldata is information sent when the callback - // was invoked (e.g., progress value in the vtkCommand::ProgressEvent). - virtual void Execute(vtkObject *caller,unsigned long event, - void *vtkNotUsed(callData)); - - protected: - - vtkViewImage2DWithContourWidgetCollectionCommand(); - ~vtkViewImage2DWithContourWidgetCollectionCommand(){}; - - private: - vtkViewImage2DWithContourWidgetCollection* Collection; - - double InitialWindow; - double InitialLevel; - -}; - -#endif diff --git a/branches/ColorViewer/ExternalCode/MegaVTK/vtkRenderingAddOn/vtkViewImage3D.cxx b/branches/ColorViewer/ExternalCode/MegaVTK/vtkRenderingAddOn/vtkViewImage3D.cxx deleted file mode 100644 index 0b9b0bcf..00000000 --- a/branches/ColorViewer/ExternalCode/MegaVTK/vtkRenderingAddOn/vtkViewImage3D.cxx +++ /dev/null @@ -1,567 +0,0 @@ -/*======================================================================== - Copyright (c) INRIA - ASCLEPIOS Project (http://www-sop.inria.fr/asclepios). - All rights reserved. - - Redistribution and use in source and binary forms, with or without - modification, are permitted provided that the following conditions are met: - - * Redistributions of source code must retain the above copyright notice, - this list of conditions and the following disclaimer. - - * Redistributions in binary form must reproduce the above copyright notice, - this list of conditions and the following disclaimer in the documentation - and/or other materials provided with the distribution. - - * Neither the name of INRIA or ASCLEPIOS, nor the names of any contributors - may be used to endorse or promote products derived from this software - without specific prior written permission. - - * Modified source versions must be plainly marked as such, and must not be - misrepresented as being the original software. - - THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDER AND CONTRIBUTORS ``AS IS'' - AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE - IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE - ARE DISCLAIMED. IN NO EVENT SHALL THE AUTHORS OR CONTRIBUTORS BE LIABLE FOR - ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL - DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR - SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER - CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, - OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE - OF THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE. - =========================================================================*/ - -/*========================================================================= - Modifications were made by the GoFigure Dev. Team. - while at Megason Lab, Systems biology, Harvard Medical school, 2009 - - Copyright (c) 2009, President and Fellows of Harvard College. - All rights reserved. - - Redistribution and use in source and binary forms, with or without - modification, are permitted provided that the following conditions are met: - - Redistributions of source code must retain the above copyright notice, - this list of conditions and the following disclaimer. - Redistributions in binary form must reproduce the above copyright notice, - this list of conditions and the following disclaimer in the documentation - and/or other materials provided with the distribution. - Neither the name of the President and Fellows of Harvard College - nor the names of its contributors may be used to endorse or promote - products derived from this software without specific prior written - permission. - - THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS - "AS IS" AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, - THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR - PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT OWNER OR CONTRIBUTORS - BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, - OR CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT - OF SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR PROFITS; - OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, - WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE - OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF - ADVISED OF THE POSSIBILITY OF SUCH DAMAGE. - - =========================================================================*/ - -#include "vtkViewImage3D.h" - -#include "vtkCamera.h" -#include "vtkCommand.h" -#include "vtkImageActor.h" -#include "vtkImageData.h" -#include "vtkImageMapToWindowLevelColors.h" -#include "vtkInteractorStyleImage.h" -#include "vtkObjectFactory.h" -#include "vtkRenderWindow.h" -#include "vtkRenderWindowInteractor.h" -#include "vtkRenderer.h" -#include "vtkMatrix4x4.h" -#include "vtkTransform.h" -#include "vtkScalarBarActor.h" -#include "vtkOrientationAnnotation.h" -#include "vtkCornerAnnotation.h" -#include "vtkTextProperty.h" -#include "vtkLookupTable.h" -#include "vtkMath.h" -#include "vtkPlane.h" -#include "vtkCutter.h" -#include "vtkActor.h" -#include "vtkPolyDataMapper.h" -#include "vtkProp3DCollection.h" -#include "vtkDataSetCollection.h" -#include "vtkPoints.h" -#include "vtkIdList.h" -#include "vtkOutlineSource.h" -#include "vtkMatrixToLinearTransform.h" -#include "vtkPointData.h" -#include "vtkUnsignedCharArray.h" -#include "vtkIntArray.h" -#include "vtkImageAccumulate.h" - - -#include -#include -#include -#include -#include -#include -#include -#include -#include -#include -#include -#include -#include -#include -#include -#include -#include -#include -#include -#include -#include -#include -#include -#include -#include -#include -#include -#include "vtkRenderWindow.h" -#include "vtkScalarsToColors.h" -#include "vtkColorTransferFunction.h" -#include -#include -#include -#include -#include -#include -#include -#include -#include -#include -#include -#include - -#include -#include - -vtkCxxRevisionMacro(vtkViewImage3D, "$Revision: 2 $"); -vtkStandardNewMacro(vtkViewImage3D); - - -//---------------------------------------------------------------------------- -class ImageActorCallback : public vtkCommand -{ -public: - - static ImageActorCallback *New() { return new ImageActorCallback; } - - void Execute(vtkObject *caller, - unsigned long event, - void *vtkNotUsed(callData)) - { - if (!this->Actor) - return; - vtkImageActor* imagecaller = vtkImageActor::SafeDownCast (caller); - - if( !imagecaller ) - return; - if( !imagecaller->GetInput() ) - return; - - if( event == vtkCommand::ModifiedEvent ) - { - this->Actor->SetInput(imagecaller->GetInput()); - this->Actor->SetInterpolate(imagecaller->GetInterpolate()); - this->Actor->SetOpacity(imagecaller->GetOpacity()); - this->Actor->SetDisplayExtent (imagecaller->GetDisplayExtent()); - } - } - - vtkImageActor* Actor; -protected: - ImageActorCallback() : Actor( 0 ) {} - ~ImageActorCallback() {} - -}; - - - -//---------------------------------------------------------------------------- -vtkViewImage3D::vtkViewImage3D() -{ - this->VolumeProperty = vtkVolumeProperty::New(); - this->VolumeActor = vtkVolume::New(); - this->VolumeRayCastMapper = vtkVolumeRayCastMapper::New(); - this->VolumeRayCastMIPFunction = vtkVolumeRayCastMIPFunction::New(); - this->VolumeRayCastCompositeFunction = - vtkVolumeRayCastCompositeFunction::New(); - this->VolumeRayCastIsosurfaceFunction = - vtkVolumeRayCastIsosurfaceFunction::New(); - this->OpacityFunction = vtkPiecewiseFunction::New(); - this->BoxWidget = vtkOrientedBoxWidget::New(); - this->Callback = vtkImage3DCroppingBoxCallback::New(); - this->Blender = vtkImageBlend::New(); - this->PlaneWidget = vtkPlaneWidget::New(); - this->VolumeMapper3D = vtkVolumeTextureMapper3D::New(); - - this->Phantom.push_back( vtkImageActor::New() ); - this->Phantom.push_back( vtkImageActor::New() ); - this->Phantom.push_back( vtkImageActor::New() ); - - this->PhantomCallback.push_back( ImageActorCallback::New() ); - this->PhantomCallback.push_back( ImageActorCallback::New() ); - this->PhantomCallback.push_back( ImageActorCallback::New() ); - - this->BoundsActor.push_back( vtkActor::New() ); - this->BoundsActor.push_back( vtkActor::New() ); - this->BoundsActor.push_back( vtkActor::New() ); - - this->SetupVolumeRendering(); - this->SetupWidgets(); -} - -//---------------------------------------------------------------------------- -vtkViewImage3D::~vtkViewImage3D() -{ - // delete all vtk objetcts: - this->VolumeMapper3D->Delete(); - this->VolumeProperty->Delete(); - this->VolumeActor->Delete(); - this->OpacityFunction->Delete(); - this->BoxWidget->Delete(); - this->Callback->Delete(); - this->Cube->Delete(); - this->Marker->Delete(); - this->Blender->Delete(); - this->PlaneWidget->Delete(); - this->VolumeRayCastMapper->Delete(); - this->VolumeRayCastMIPFunction->Delete(); - this->VolumeRayCastCompositeFunction->Delete(); - this->VolumeRayCastIsosurfaceFunction->Delete(); - this->Phantom[0]->Delete(); - this->Phantom[1]->Delete(); - this->Phantom[2]->Delete(); - this->PhantomCallback[0]->Delete(); - this->PhantomCallback[1]->Delete(); - this->PhantomCallback[2]->Delete(); - this->BoundsActor[0]->Delete(); - this->BoundsActor[1]->Delete(); - this->BoundsActor[2]->Delete(); -} - - -//---------------------------------------------------------------------------- -void vtkViewImage3D::SetupVolumeRendering() -{ - this->Blender->SetBlendModeToNormal(); - this->Blender->SetOpacity (0, 0.25); - this->Blender->SetOpacity (1, 0.75); - vtkVolumeTextureMapper3D* texturemapper = - vtkVolumeTextureMapper3D::SafeDownCast ( this->VolumeActor->GetMapper() ); - if (texturemapper) - { - texturemapper->SetSampleDistance(0.5); - texturemapper->SetPreferredMethodToNVidia(); - } - - this->VolumeMapper3D->CroppingOn(); - this->VolumeMapper3D->SetCroppingRegionFlagsToSubVolume(); - this->VolumeMapper3D->SetCroppingRegionFlags (0x7ffdfff); - this->VolumeRayCastMapper->SetSampleDistance(2.0); - this->VolumeRayCastMapper->CroppingOn(); - this->VolumeRayCastMapper->SetCroppingRegionFlags (0x7ffdfff); - vtkFiniteDifferenceGradientEstimator *gradest = - vtkFiniteDifferenceGradientEstimator::New(); - this->VolumeRayCastMapper->SetGradientEstimator(gradest); - gradest->Delete(); - this->VolumeRayCastMapper->SetVolumeRayCastFunction ( - this->VolumeRayCastCompositeFunction ); - this->OpacityFunction->AddPoint (0, 0.0); - this->OpacityFunction->AddPoint (255, 1.0); - vtkColorTransferFunction* colorfunction = vtkColorTransferFunction::New(); - colorfunction->AddRGBPoint (0, 0.0, 0.0, 0.0); - colorfunction->AddRGBPoint (255, 1.0, 1.0, 1.0); - this->VolumeProperty->IndependentComponentsOff(); - this->VolumeProperty->SetColor (colorfunction); - colorfunction->Delete(); - this->VolumeProperty->SetScalarOpacity(this->OpacityFunction); - this->VolumeProperty->SetInterpolationTypeToLinear(); - this->VolumeProperty->ShadeOff(); - this->VolumeProperty->SetDiffuse (0.9); - this->VolumeProperty->SetAmbient (0.2); - this->VolumeProperty->SetSpecular (0.3); - this->VolumeProperty->SetSpecularPower (15.0); - // set up the vtk pipeline: volume rendering - this->VolumeActor->SetProperty ( this->VolumeProperty ); - this->VolumeActor->SetMapper ( this->VolumeMapper3D ); - this->VolumeActor->PickableOff(); - this->VolumeActor->DragableOff(); - this->VolumeActor->SetVisibility (0); - - // set up the boxwidget/ callback - this->Callback->SetVolumeMapper ( this->VolumeMapper3D ); - - this->Renderer->AddViewProp (this->VolumeActor); - -} - - -//---------------------------------------------------------------------------- -void vtkViewImage3D::SetupWidgets() -{ - - // Create an annotated cube actor (directions) - this->Cube = vtkAnnotatedCubeActor::New(); - this->Cube->SetXPlusFaceText ("L"); - this->Cube->SetXMinusFaceText ("R"); - this->Cube->SetYPlusFaceText ("P"); - this->Cube->SetYMinusFaceText ("A"); - this->Cube->SetZPlusFaceText ("D"); - this->Cube->SetZMinusFaceText ("V"); - this->Cube->SetZFaceTextRotation (90); - this->Cube->SetFaceTextScale (0.65); - this->Cube->GetCubeProperty()->SetColor (0.5, 1, 1); - this->Cube->GetTextEdgesProperty()->SetLineWidth (1); - this->Cube->GetTextEdgesProperty()->SetDiffuse (0); - this->Cube->GetTextEdgesProperty()->SetAmbient (1); - this->Cube->GetTextEdgesProperty()->SetColor (0.18, 0.28, 0.23); - -#if VTK_MAJOR_VERSION==5 && VTK_MINOR_VERSION>=1 - this->Cube->SetTextEdgesVisibility (1); - this->Cube->SetCubeVisibility(1); - this->Cube->SetFaceTextVisibility(1); -#else - this->Cube->TextEdgesOn (); - this->Cube->FaceTextOn(); - this->Cube->CubeOn(); -#endif - - this->Cube->GetXPlusFaceProperty()->SetColor (1, 0, 0); - this->Cube->GetXPlusFaceProperty()->SetInterpolationToFlat(); - this->Cube->GetXMinusFaceProperty()->SetColor (1, 0, 0); - this->Cube->GetXMinusFaceProperty()->SetInterpolationToFlat(); - this->Cube->GetYPlusFaceProperty()->SetColor (0, 1, 0); - this->Cube->GetYPlusFaceProperty()->SetInterpolationToFlat(); - this->Cube->GetYMinusFaceProperty()->SetColor (0, 1, 0); - this->Cube->GetYMinusFaceProperty()->SetInterpolationToFlat(); - this->Cube->GetZPlusFaceProperty()->SetColor (0, 0, 1); - this->Cube->GetZPlusFaceProperty()->SetInterpolationToFlat(); - this->Cube->GetZMinusFaceProperty()->SetColor (0, 0, 1); - this->Cube->GetZMinusFaceProperty()->SetInterpolationToFlat(); - - this->Marker = vtkOrientationMarkerWidget::New(); - this->Marker->SetOutlineColor (0.93, 0.57, 0.13); - this->Marker->SetOrientationMarker (this->Cube); - this->Marker->SetViewport (0.0, 0.05, 0.15, 0.15); - - this->BoxWidget->RotationEnabledOff(); - this->BoxWidget->SetPlaceFactor (0.5); - this->BoxWidget->SetKeyPressActivationValue ('b'); - this->BoxWidget->AddObserver (vtkCommand::InteractionEvent, this->Callback); - - this->PlaneWidget->SetKeyPressActivationValue ('p'); - this->PlaneWidget->NormalToZAxisOn(); - -} - -//---------------------------------------------------------------------------- -void vtkViewImage3D::Render() -{ - - if (this->FirstRender) - { - // Initialize the size if not set yet - - vtkImageData *input = this->GetInput(); - if (this->RenderWindow->GetSize()[0] == 0 && input) - { - if (this->Renderer) - { - this->Renderer->ResetCamera(); - } - this->FirstRender = 0; - } - } - if (this->GetInput()) - { - this->RenderWindow->Render(); - } -} - - -void vtkViewImage3D::Add2DPhantom(const unsigned int& i, - vtkImageActor* input, - vtkPolyData* in_bounds ) -{ - if( i >= 3 ) - return; - - vtkRenderer* ren = this->GetRenderer(); - if( ren ) - { - this->Phantom[i]->SetInput (input->GetInput()); - this->Phantom[i]->SetDisplayExtent (input->GetDisplayExtent()); - this->Phantom[i]->SetUserMatrix (input->GetUserMatrix()); - this->PhantomCallback[i]->Actor = this->Phantom[i]; - input->AddObserver (vtkCommand::ModifiedEvent, this->PhantomCallback[i]); - ren->AddActor (this->Phantom[i]); - - /** - IMPORTANT NOTE - - Adding a 2D actor in the 3D scene should be as simple as the next line - instead of the code above... - - Unfortunately it does not seem to work properly. But this is something - we should investigate in because it would be much simpler - */ - // this->GetRenderer()->AddActor (input); - - if( in_bounds ) - { - vtkPolyDataMapper* bounds_mapper = vtkPolyDataMapper::New(); - bounds_mapper->SetInput( in_bounds ); - - this->BoundsActor[i]->SetMapper( bounds_mapper ); - this->BoundsActor[i]->GetProperty()->SetRepresentationToWireframe(); - this->BoundsActor[i]->GetProperty()->SetLineWidth( 2. ); - - ren->AddActor( this->BoundsActor[i] ); - bounds_mapper->Delete(); - } - - } - -} - -//---------------------------------------------------------------------------- -void vtkViewImage3D::InstallPipeline() -{ - if (this->RenderWindow && this->Renderer) - { - this->RenderWindow->AddRenderer(this->Renderer); - } - - if (this->Interactor) - { - - // init the interactor style: - vtkInteractorStyleSwitch* interactorStyle = vtkInteractorStyleSwitch::New(); - interactorStyle->SetCurrentStyleToTrackballCamera(); - this->Interactor->SetInteractorStyle (interactorStyle); - this->BoxWidget->SetInteractor ( this->Interactor ); - this->PlaneWidget->SetInteractor ( this->Interactor ); - this->Marker->SetInteractor ( this->Interactor ); - interactorStyle->Delete(); - this->Interactor->SetRenderWindow(this->RenderWindow); - - this->Marker->On(); - this->Marker->InteractiveOff (); - - } - -} - - -//---------------------------------------------------------------------------- -void vtkViewImage3D::SetInput(vtkImageData* image) -{ - this->Superclass::SetInput (image); - - if( !image ) - { - return; - } - - int* size = image->GetDimensions(); - - if ( (size[0] < 2) || - (size[1] < 2) || - (size[2] < 2) ) - { - vtkWarningMacro ( <<"Cannot do volume rendering for a single slice, skipping"<VolumeMapper3D->SetInput ( this->GetInput() ); - this->VolumeRayCastMapper->SetInput ( this->GetInput() ); - - this->SetupTextureMapper(); - - this->BoxWidget->SetInput (this->GetInput()); - this->BoxWidget->PlaceWidget(); - - this->PlaneWidget->SetInput (this->GetInput()); - this->PlaneWidget->PlaceWidget(); - - // line to be removed: the box has to be called externally - this->BoxWidget->On(); - - this->VolumeActor->SetVisibility (1); -} - - - -//---------------------------------------------------------------------------- -void vtkViewImage3D::SetOrientationMatrix (vtkMatrix4x4* matrix) -{ - this->Superclass::SetOrientationMatrix (matrix); - - this->VolumeActor->SetUserMatrix (matrix); - this->BoxWidget->SetOrientationMatrix (matrix); -// this->PlaneWidget->SetTransform (transform); -} - - - -//---------------------------------------------------------------------------- -void vtkViewImage3D::SetupTextureMapper() -{ - - if (!this->GetInput()) - return; - - vtkVolumeTextureMapper3D* mapper3D = - vtkVolumeTextureMapper3D::SafeDownCast( this->VolumeActor->GetMapper() ); - - if( mapper3D && !this->GetRenderWindow()->GetNeverRendered() ) - { - if( !mapper3D->IsRenderSupported ( this->VolumeProperty ) ) - { - //try the ATI fragment program implementation - mapper3D->SetPreferredMethodToFragmentProgram(); - if ( !mapper3D->IsRenderSupported ( this->VolumeProperty ) ) - { - vtkWarningMacro ( - <<"Warning: 3D Texture volume rendering is not supported by your" - <<" hardware, I switch to 2D Texture rendering."<CroppingOn(); - newMapper->SetCroppingRegionFlags (0x7ffdfff); - - - double* range = this->GetInput()->GetScalarRange(); - double shift = 0 - range[0]; - double scale = 65535.0/(range[1] - range[0]); - - vtkImageShiftScale* scaler = vtkImageShiftScale::New(); - scaler->SetInput (this->GetInput()); - scaler->SetShift (shift); - scaler->SetScale (scale); - scaler->SetOutputScalarTypeToUnsignedShort(); - scaler->Update(); - newMapper->SetInput ( scaler->GetOutput() ); - scaler->Delete(); - this->Callback->SetVolumeMapper (newMapper); - - mapper3D->Delete(); - this->VolumeMapper3D = newMapper; - this->VolumeActor->SetMapper ( this->VolumeMapper3D ); - } - } - } -} diff --git a/branches/ColorViewer/ExternalCode/MegaVTK/vtkRenderingAddOn/vtkViewImage3D.h b/branches/ColorViewer/ExternalCode/MegaVTK/vtkRenderingAddOn/vtkViewImage3D.h deleted file mode 100644 index 39295661..00000000 --- a/branches/ColorViewer/ExternalCode/MegaVTK/vtkRenderingAddOn/vtkViewImage3D.h +++ /dev/null @@ -1,335 +0,0 @@ -/*======================================================================== - Copyright (c) INRIA - ASCLEPIOS Project (http://www-sop.inria.fr/asclepios). - All rights reserved. - - Redistribution and use in source and binary forms, with or without - modification, are permitted provided that the following conditions are met: - - * Redistributions of source code must retain the above copyright notice, - this list of conditions and the following disclaimer. - - * Redistributions in binary form must reproduce the above copyright notice, - this list of conditions and the following disclaimer in the documentation - and/or other materials provided with the distribution. - - * Neither the name of INRIA or ASCLEPIOS, nor the names of any contributors - may be used to endorse or promote products derived from this software - without specific prior written permission. - - * Modified source versions must be plainly marked as such, and must not be - misrepresented as being the original software. - - THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDER AND CONTRIBUTORS ``AS IS'' - AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE - IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE - ARE DISCLAIMED. IN NO EVENT SHALL THE AUTHORS OR CONTRIBUTORS BE LIABLE FOR - ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL - DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR - SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER - CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, - OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE - OF THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE. - =========================================================================*/ - -/*========================================================================= - Modifications were made by the GoFigure Dev. Team. - while at Megason Lab, Systems biology, Harvard Medical school, 2009 - - Copyright (c) 2009, President and Fellows of Harvard College. - All rights reserved. - - Redistribution and use in source and binary forms, with or without - modification, are permitted provided that the following conditions are met: - - Redistributions of source code must retain the above copyright notice, - this list of conditions and the following disclaimer. - Redistributions in binary form must reproduce the above copyright notice, - this list of conditions and the following disclaimer in the documentation - and/or other materials provided with the distribution. - Neither the name of the President and Fellows of Harvard College - nor the names of its contributors may be used to endorse or promote - products derived from this software without specific prior written - permission. - - THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS - "AS IS" AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, - THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR - PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT OWNER OR CONTRIBUTORS - BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, - OR CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT - OF SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR PROFITS; - OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, - WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE - OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF - ADVISED OF THE POSSIBILITY OF SUCH DAMAGE. - - =========================================================================*/ - -#ifndef _vtkViewImage3D_h_ -#define _vtkViewImage3D_h_ - -#include "vtkViewImage.h" - -#include -#include -#include -#include -#include -#include -#include -#include -#include -#include -#include -#include -#include "vtkImage3DCroppingBoxCallback.h" -#include - -#include - -class vtkVolumeTextureMapper3D; -class vtkVolumeMapper; -class vtkVolumeRayCastFunction; -class vtkPiecewiseFunction; -class vtkColorTransferFunction; -class vtkVolume; -class vtkImageActor; -class vtkAxes; -class vtkDataSet3DCroppingPlaneCallback; -class vtkTubeFilter; -class vtkAnnotatedCubeActor; -class vtkOrientationMarkerWidget; -class vtkAxesActor; -class vtkImageBlend; -class vtkViewImage2D; -class vtkScalarsToColors; -class vtkColorTransferFunction; - - -/** - -*/ - -class ImageActorCallback; - -class vtkViewImage3D : public vtkViewImage -{ - - public: - - static vtkViewImage3D* New(); - vtkTypeRevisionMacro(vtkViewImage3D, vtkViewImage); - - // Description: - // Render the resulting image. - virtual void Render(void); - - /** - Add a dataset to the view (has to be subclass of vtkPointSet). - The dataset will be cut through the implicit slice plane - (GetImplicitSlicePlane()). - - This results in a loss of dimensionality, i.e. tetrahedron will be displayed - as triangles, triangles as lines, lines as points. - A vtkProperty of the dataset can be specified. - */ - virtual void AddDataSet (vtkDataSet* dataset, - vtkProperty* property = NULL, - const bool& intersection = true ) {}; - /** - Set/Get the current slice to display (depending on the orientation - this can be in X, Y or Z). - */ - virtual void SetSlice(int s){}; - virtual void SetSliceOrientation(int orientation){}; - // Description: - // Update the display extent manually so that the proper slice for the - // given orientation is displayed. It will also try to set a - // reasonable camera clipping range. - // This method is called automatically when the Input is changed, but - // most of the time the input of this class is likely to remain the same, - // i.e. connected to the output of a filter, or an image reader. When the - // input of this filter or reader itself is changed, an error message might - // be displayed since the current display extent is probably outside - // the new whole extent. Calling this method will ensure that the display - // extent is reset properly. - virtual void UpdateDisplayExtent(){}; - - virtual void Add2DPhantom( - const unsigned int& i, - vtkImageActor* input, - vtkPolyData* in_bounds = NULL ); - - virtual void SetInput (vtkImageData* input); - - virtual void SetOrientationMatrix (vtkMatrix4x4* matrix); - - void SetVolumeRenderingOff() - { - this->VolumeActor->SetVisibility (false); - this->BoxWidget->Off(); - } - - void SetVolumeRenderingOn() - { - this->VolumeActor->SetVisibility(true); - } - - void SetTriPlanarRenderingOn() - { - this->VolumeActor->SetVisibility(false); - for( int i = 0; i < 3; i++ ) - { - this->Phantom[i]->SetVisibility(true); - this->BoundsActor[i]->SetVisibility(true); - } - } - - void SetTriPlanarRenderingOff() - { - this->VolumeActor->SetVisibility(true); - for( int i = 0; i < 3; i++ ) - { - this->Phantom[i]->SetVisibility(false); - this->BoundsActor[i]->SetVisibility(false); - } - } - - void SetVolumeMapperToTexture (void) - { - this->VolumeActor->SetMapper ( this->VolumeMapper3D ); - this->Callback->SetVolumeMapper ( this->VolumeMapper3D ); - } - - void SetVolumeMapperToRayCast (void) - { - this->VolumeActor->SetMapper ( this->VolumeRayCastMapper ); - this->Callback->SetVolumeMapper ( this->VolumeRayCastMapper ); - } - - void SetVolumeRayCastFunctionToComposite (void) - { - this->VolumeRayCastMapper->SetVolumeRayCastFunction - (this->VolumeRayCastCompositeFunction ); - } - - - void SetVolumeRayCastFunctionToMIP (void) - { - this->VolumeRayCastMapper->SetVolumeRayCastFunction - ( this->VolumeRayCastMIPFunction ); - } - - - void SetVolumeRayCastFunctionToIsosurface (void) - { - this->VolumeRayCastMapper->SetVolumeRayCastFunction - ( this->VolumeRayCastIsosurfaceFunction ); - } - - - - /** Set the box widget visibility */ - void SetBoxWidgetVisibility (int a) - { - if (this->Interactor) - this->BoxWidget->SetEnabled (a); - } - bool GetBoxWidgetVisibility (void) - { - return ( this->BoxWidget->GetEnabled() == 1 ); - } - vtkBooleanMacro (BoxWidgetVisibility, int); - - /** Set the plane widget on */ - void SetPlaneWidgetVisibility (int a) - { - if (this->Interactor) - this->PlaneWidget->SetEnabled (a); - } - bool GetPlaneWidgetVisibility (void) - { - return ( this->PlaneWidget->GetEnabled() == 1 ); - } - vtkBooleanMacro (PlaneWidgetVisibility, int); - - /** Set the cube widget on */ - void SetCubeVisibility (int a) - { - if (this->Interactor) - this->Marker->SetEnabled (a); - } - bool GetCubeVisibility (void) - { - return ( this->Marker->GetEnabled() == 1 ); - } - vtkBooleanMacro (CubeVisibility, int); - - void SetShade (int a) - { - this->VolumeProperty->SetShade (a); - } - bool GetShade (void) - { - return ( this->VolumeProperty->GetShade() == 1 ); - } - vtkBooleanMacro (Shade, int); - - - /** Get volume actor */ - vtkGetObjectMacro (VolumeActor, vtkVolume); - vtkGetObjectMacro (PlaneWidget, vtkPlaneWidget); - vtkGetObjectMacro (VolumeProperty, vtkVolumeProperty); - vtkGetObjectMacro (BoxWidget, vtkOrientedBoxWidget); - - - - protected: - - vtkViewImage3D(); - ~vtkViewImage3D(); - - // Description: - virtual void InstallPipeline(); - virtual void UpdateOrientation(){} - - virtual void SetupVolumeRendering(); - virtual void SetupWidgets(); - virtual void SetupTextureMapper(); - - // texture mapper in 3D - vtkVolumeMapper* VolumeMapper3D; - // volume ray cast mapper - vtkVolumeRayCastMapper* VolumeRayCastMapper; - // ray cast function - vtkVolumeRayCastMIPFunction* VolumeRayCastMIPFunction; - // ray cast function - vtkVolumeRayCastCompositeFunction* VolumeRayCastCompositeFunction; - // ray cast function - vtkVolumeRayCastIsosurfaceFunction* VolumeRayCastIsosurfaceFunction; - // volume property - vtkVolumeProperty* VolumeProperty; - // volume actor - vtkVolume* VolumeActor; - // opacity transfer function - vtkPiecewiseFunction* OpacityFunction; - // blender - vtkImageBlend* Blender; - // image 3D cropping box callback - vtkImage3DCroppingBoxCallback* Callback; - - std::vector< vtkImageActor* > Phantom; - std::vector< ImageActorCallback* > PhantomCallback; - std::vector< vtkActor* > BoundsActor; - - // box widget - vtkOrientedBoxWidget* BoxWidget; - // vtkPlane widget - vtkPlaneWidget* PlaneWidget; - // annotated cube actor - vtkAnnotatedCubeActor* Cube; - vtkOrientationMarkerWidget* Marker; - -}; - -#endif /* _vtkViewImage3D_h_ */ diff --git a/branches/ColorViewer/ExternalCode/itkQt/itkQtAdaptor.h b/branches/ColorViewer/ExternalCode/itkQt/itkQtAdaptor.h deleted file mode 100644 index 86a9e821..00000000 --- a/branches/ColorViewer/ExternalCode/itkQt/itkQtAdaptor.h +++ /dev/null @@ -1,197 +0,0 @@ -/*========================================================================= - - Program: Insight Segmentation & Registration Toolkit - Module: $RCSfile: itkQtAdaptor.h,v $ - Language: C++ - Date: $Date: 2002-09-13 14:32:40 $ - Version: $Revision: 1.4 $ - - Copyright (c) 2002 Insight Consortium. All rights reserved. - See ITKCopyright.txt or http://www.itk.org/HTML/Copyright.htm for details. - - This software is distributed WITHOUT ANY WARRANTY; without even - the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR - PURPOSE. See the above copyright notices for more information. - -=========================================================================*/ - -/*========================================================================= - Modifications were made by the GoFigure Dev. Team. - while at Megason Lab, Systems biology, Harvard Medical school, 2009 - - Copyright (c) 2009, President and Fellows of Harvard College. - All rights reserved. - - Redistribution and use in source and binary forms, with or without - modification, are permitted provided that the following conditions are met: - - Redistributions of source code must retain the above copyright notice, - this list of conditions and the following disclaimer. - Redistributions in binary form must reproduce the above copyright notice, - this list of conditions and the following disclaimer in the documentation - and/or other materials provided with the distribution. - Neither the name of the President and Fellows of Harvard College - nor the names of its contributors may be used to endorse or promote - products derived from this software without specific prior written - permission. - - THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS - "AS IS" AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, - THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR - PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT OWNER OR CONTRIBUTORS - BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, - OR CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT - OF SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR PROFITS; - OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, - WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE - OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF - ADVISED OF THE POSSIBILITY OF SUCH DAMAGE. - -=========================================================================*/ - -#ifndef __itkQtAdaptor_h -#define __itkQtAdaptor_h - -#include -#include "itkObject.h" -#include "itkObjectFactory.h" -#include "itkCommand.h" - - -namespace itk { - -/** Helper class that interface with Qt Signals and Slots */ -class QtTranslator : public QObject -{ - - Q_OBJECT - -public: - QtTranslator() {} - virtual ~QtTranslator() {} - -signals: - void Signal(); - -public slots: - virtual void Slot() {}; - virtual void Slot(int) {}; - virtual void Slot(double) {}; - -}; - - - -/** Helper class that interface Methods with Qt Slots */ -template -class QtSlotAdaptor : public QtTranslator -{ - typedef void (T::*TMemberFunctionVoidPointer)(); - typedef void (T::*TMemberFunctionIntPointer)(int); - typedef void (T::*TMemberFunctionDoublePointer)(double); - -public: - QtSlotAdaptor():m_MemberFunctionVoid(0), - m_MemberFunctionInt(0), - m_MemberFunctionDouble(0) {} - - virtual ~QtSlotAdaptor() {} - - /** Specify the callback function. */ - void SetCallbackFunction(T* object, - TMemberFunctionVoidPointer memberFunction) - { - m_This = object; - m_MemberFunctionVoid = memberFunction; - } - - /** Specify the callback function. */ - void SetCallbackFunction(T* object, - TMemberFunctionIntPointer memberFunction) - { - m_This = object; - m_MemberFunctionInt = memberFunction; - } - - /** Specify the callback function. */ - void SetCallbackFunction(T* object, - TMemberFunctionDoublePointer memberFunction) - { - m_This = object; - m_MemberFunctionDouble = memberFunction; - } - - /** Slot to be connected to Qt Signals. */ - void Slot() - { - if( m_MemberFunctionVoid ) - { - ((*m_This).*(m_MemberFunctionVoid))(); - } - } - - /** Slot to be connected to Qt Signals. */ - void Slot(int value) - { - if( m_MemberFunctionInt ) - { - ((*m_This).*(m_MemberFunctionInt))(value); - } - } - - /** Slot to be connected to Qt Signals. */ - void Slot(double value) - { - if( m_MemberFunctionDouble ) - { - ((*m_This).*(m_MemberFunctionDouble))(value); - } - } - - - -protected: - T* m_This; - TMemberFunctionVoidPointer m_MemberFunctionVoid; - TMemberFunctionIntPointer m_MemberFunctionInt; - TMemberFunctionDoublePointer m_MemberFunctionDouble; - - -}; - - - - - -/** Helper class that interface Observers with Qt Signals */ -class QtSignalAdaptor : public QtTranslator -{ - typedef SimpleMemberCommand CommandType; - -public: - QtSignalAdaptor() - { - m_Command = CommandType::New(); - m_Command->SetCallbackFunction( this, & QtSignalAdaptor::EmitSignal ); - } - - virtual ~QtSignalAdaptor() {} - - CommandType * GetCommand() - { - return m_Command; - } - - void EmitSignal() - { - emit Signal(); - } - -private: - CommandType::Pointer m_Command; -}; - -} // end namespace - -#endif - diff --git a/branches/ColorViewer/ExternalCode/itkQt/itkQtProgressBar.cxx b/branches/ColorViewer/ExternalCode/itkQt/itkQtProgressBar.cxx deleted file mode 100644 index 42f3ddd1..00000000 --- a/branches/ColorViewer/ExternalCode/itkQt/itkQtProgressBar.cxx +++ /dev/null @@ -1,132 +0,0 @@ -/*========================================================================= - - Program: Insight Segmentation & Registration Toolkit - Module: $RCSfile: itkQtProgressBar.cxx,v $ - Language: C++ - Date: $Date: 2002-09-13 14:32:01 $ - Version: $Revision: 1.3 $ - - Copyright (c) 2002 Insight Consortium. All rights reserved. - See ITKCopyright.txt or http://www.itk.org/HTML/Copyright.htm for details. - - This software is distributed WITHOUT ANY WARRANTY; without even - the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR - PURPOSE. See the above copyright notices for more information. - -=========================================================================*/ - -/*========================================================================= - Modifications were made by the GoFigure Dev. Team. - while at Megason Lab, Systems biology, Harvard Medical school, 2009 - - Copyright (c) 2009, President and Fellows of Harvard College. - All rights reserved. - - Redistribution and use in source and binary forms, with or without - modification, are permitted provided that the following conditions are met: - - Redistributions of source code must retain the above copyright notice, - this list of conditions and the following disclaimer. - Redistributions in binary form must reproduce the above copyright notice, - this list of conditions and the following disclaimer in the documentation - and/or other materials provided with the distribution. - Neither the name of the President and Fellows of Harvard College - nor the names of its contributors may be used to endorse or promote - products derived from this software without specific prior written - permission. - - THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS - "AS IS" AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, - THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR - PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT OWNER OR CONTRIBUTORS - BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, - OR CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT - OF SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR PROFITS; - OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, - WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE - OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF - ADVISED OF THE POSSIBILITY OF SUCH DAMAGE. - - =========================================================================*/ - - -#include "itkProcessObject.h" -#include "itkQtProgressBar.h" - - -namespace itk { - -/** Constructor */ -QtProgressBar::QtProgressBar( QWidget *parent ):QProgressBar(parent) -{ - m_RedrawCommand = RedrawCommandType::New(); - m_RedrawCommand->SetCallbackFunction( this, &QtProgressBar::ProcessEvent ); - m_RedrawCommand->SetCallbackFunction( this, &QtProgressBar::ConstProcessEvent ); - - this->setMinimum( 0 ); - this->setMaximum( 100 ); - this->reset(); - -} - - -/** Get Command */ -QtProgressBar::RedrawCommandType * -QtProgressBar::GetRedrawCommand( void ) const -{ - return m_RedrawCommand.GetPointer(); -} - - - - - -/** Manage a Progress event */ -void -QtProgressBar::ProcessEvent( itk::Object * caller, - const itk::EventObject & event ) -{ - if( typeid( itk::ProgressEvent ) == typeid( event ) ) - { - ::itk::ProcessObject::Pointer process = - dynamic_cast< itk::ProcessObject *>( caller ); - - const int value = static_cast( - process->GetProgress() * this->maximum() ); - std::cout << "New Value : " << value << std::endl; - this->setValue( value ); - } -} - - - - -void -QtProgressBar::ConstProcessEvent( const itk::Object * caller, - const itk::EventObject & event ) -{ - if( typeid( itk::ProgressEvent ) == typeid( event ) ) - { - itk::ProcessObject::ConstPointer process = - dynamic_cast< const itk::ProcessObject *>( caller ); - - const int value = static_cast( - process->GetProgress() * this->maximum() ); - std::cout << "New Value : " << value << std::endl; - this->setValue( value ); - } -} - - -/** Manage a Progress event */ -void -QtProgressBar::Observe( itk::Object *caller ) -{ - caller->AddObserver( itk::ProgressEvent(), m_RedrawCommand.GetPointer() ); -} - - - -} // end namespace fltk - - diff --git a/branches/ColorViewer/ExternalCode/itkQt/itkQtProgressBar.h b/branches/ColorViewer/ExternalCode/itkQt/itkQtProgressBar.h deleted file mode 100644 index 738b2fce..00000000 --- a/branches/ColorViewer/ExternalCode/itkQt/itkQtProgressBar.h +++ /dev/null @@ -1,95 +0,0 @@ -/*========================================================================= - - Program: Insight Segmentation & Registration Toolkit - Module: $RCSfile: itkQtProgressBar.h,v $ - Language: C++ - Date: $Date: $ - Version: $Revision: $ - - Copyright (c) 2002 Insight Consortium. All rights reserved. - See ITKCopyright.txt or http://www.itk.org/HTML/Copyright.htm for details. - - This software is distributed WITHOUT ANY WARRANTY; without even - the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR - PURPOSE. See the above copyright notices for more information. - - =========================================================================*/ - -/*========================================================================= - Modifications were made by the GoFigure Dev. Team. - while at Megason Lab, Systems biology, Harvard Medical school, 2009 - - Copyright (c) 2009, President and Fellows of Harvard College. - All rights reserved. - - Redistribution and use in source and binary forms, with or without - modification, are permitted provided that the following conditions are met: - - Redistributions of source code must retain the above copyright notice, - this list of conditions and the following disclaimer. - Redistributions in binary form must reproduce the above copyright notice, - this list of conditions and the following disclaimer in the documentation - and/or other materials provided with the distribution. - Neither the name of the President and Fellows of Harvard College - nor the names of its contributors may be used to endorse or promote - products derived from this software without specific prior written - permission. - - THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS - "AS IS" AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, - THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR - PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT OWNER OR CONTRIBUTORS - BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, - OR CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT - OF SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR PROFITS; - OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, - WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE - OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF - ADVISED OF THE POSSIBILITY OF SUCH DAMAGE. - - =========================================================================*/ - -#ifndef __itkQtProgressBar_h -#define __itkQtProgressBar_h - -#include -#include "itkCommand.h" - -namespace itk { - - -class QtProgressBar : public ::QProgressBar -{ - -public: - - /** Command Class invoked for button redraw */ - typedef itk::MemberCommand< QtProgressBar > RedrawCommandType; - - /** Constructor */ - explicit QtProgressBar( QWidget *parent = 0 ); - - /** Get Command */ - RedrawCommandType * GetRedrawCommand( void ) const; - - - /** Manage a Progress event */ - void ProcessEvent(itk::Object * caller, const itk::EventObject & event ); - void ConstProcessEvent(const itk::Object * caller, const itk::EventObject & event ); - - - /** Manage a Progress event */ - void Observe( itk::Object *caller ); - -private: - - RedrawCommandType::Pointer m_RedrawCommand; - - - -}; - - -} // end of namespace - -#endif diff --git a/branches/ColorViewer/ExternalCode/qticonloader/qticonloader.cxx b/branches/ColorViewer/ExternalCode/qticonloader/qticonloader.cxx deleted file mode 100644 index 7ce4bfe7..00000000 --- a/branches/ColorViewer/ExternalCode/qticonloader/qticonloader.cxx +++ /dev/null @@ -1,351 +0,0 @@ -/**************************************************************************** -** -** Copyright (C) 2009 Nokia Corporation and/or its subsidiary(-ies). -** Contact: Qt Software Information (qt-info@nokia.com) -** -** This file is part of the QtIconLoader project on Qt Software Labs. -** -** Commercial Usage -** Licensees holding valid Qt Commercial licenses may use this file in -** accordance with the Qt Commercial License Agreement provided with the -** Software or, alternatively, in accordance with the terms contained in -** a written agreement between you and Nokia. -** -** -** GNU General Public License Usage -** Alternatively, this file may be used under the terms of the GNU -** General Public License versions 2.0 or 3.0 as published by the Free -** Software Foundation and appearing in the file LICENSE.GPL included in -** the packaging of this file. Please review the following information -** to ensure GNU General Public Licensing requirements will be met: -** http://www.fsf.org/licensing/licenses/info/GPLv2.html and -** http://www.gnu.org/copyleft/gpl.html. In addition, as a special -** exception, Nokia gives you certain additional rights. These rights -** are described in the Nokia Qt GPL Exception version 1.3, included in -** the file GPL_EXCEPTION.txt in this package. -** -****************************************************************************/ - - -#include "qticonloader.h" -#include - -#include -#include -#include -#include -#include -#include -#include - -#ifdef Q_WS_X11 - -class QIconTheme -{ -public: - QIconTheme(QHash dirList, QStringList parents) : - _dirList(dirList), _parents(parents), _valid(true){ } - QIconTheme() : _valid(false){ } - QHash dirList() {return _dirList;} - QStringList parents() {return _parents;} - bool isValid() {return _valid;} - -private: - QHash _dirList; - QStringList _parents; - bool _valid; -}; - -class QtIconLoaderImplementation -{ -public: - QtIconLoaderImplementation(); - QPixmap findIcon(int size, const QString &name) const; - -private: - QIconTheme parseIndexFile(const QString &themeName) const; - void lookupIconTheme() const; - QPixmap findIconHelper(int size, - const QString &themeName, - const QString &iconName, - QStringList &visited) const; - mutable QString themeName; - mutable QStringList iconDirs; - mutable QHash themeList; -}; - -Q_GLOBAL_STATIC(QtIconLoaderImplementation, iconLoaderInstance) -#endif - -/*! - - Returns the standard icon for the given icon /a name - as specified in the freedesktop icon spec - http://standards.freedesktop.org/icon-naming-spec/icon-naming-spec-latest.html - - /a fallback is an optional argument to specify the icon to be used if - no icon is found on the platform. This is particularily useful for - crossplatform code. - -*/ -QIcon QtIconLoader::icon(const QString &name, const QIcon &fallback) -{ - QIcon icon; -#ifdef Q_WS_X11 - QString pngExtension(QLatin1String(".png")); - QList iconSizes; - iconSizes << 16 << 24 << 32 << 64; - foreach (int size, iconSizes) { - icon.addPixmap(iconLoaderInstance()->findIcon(size, name + pngExtension)); - } - - if (icon.isNull()) - icon = fallback; -#else - Q_UNUSED(name); - Q_UNUSED(fallback); -#endif // Q_WS_X11 - return icon; -} - -#ifdef Q_WS_X11 - -QtIconLoaderImplementation::QtIconLoaderImplementation() -{ - lookupIconTheme(); -} - -extern "C" { - struct GConfClient; - struct GError; - typedef void (*Ptr_g_type_init)(); - typedef GConfClient* (*Ptr_gconf_client_get_default)(); - typedef char* (*Ptr_gconf_client_get_string)(GConfClient*, const char*, GError **); - typedef void (*Ptr_g_object_unref)(void *); - typedef void (*Ptr_g_error_free)(GError *); - typedef void (*Ptr_g_free)(void*); - static Ptr_g_type_init p_g_type_init = 0; - static Ptr_gconf_client_get_default p_gconf_client_get_default = 0; - static Ptr_gconf_client_get_string p_gconf_client_get_string = 0; - static Ptr_g_object_unref p_g_object_unref = 0; - static Ptr_g_error_free p_g_error_free = 0; - static Ptr_g_free p_g_free = 0; -} - - -static int kdeVersion() -{ - static int version = -1; - if (version == -1) - version = qgetenv("KDE_SESSION_VERSION").toInt(); - return version; -} - -static QString kdeHome() -{ - static QString kdeHomePath; - if (kdeHomePath.isEmpty()) { - kdeHomePath = QString::fromLocal8Bit(qgetenv("KDEHOME")); - if (kdeHomePath.isEmpty()) { - int kdeSessionVersion = QString::fromLocal8Bit(qgetenv("KDE_SESSION_VERSION")).toInt(); - QDir homeDir(QDir::homePath()); - QString kdeConfDir(QLatin1String("/.kde")); - if (4 == kdeSessionVersion && homeDir.exists(QLatin1String(".kde4"))) - kdeConfDir = QLatin1String("/.kde4"); - kdeHomePath = QDir::homePath() + kdeConfDir; - } - } - return kdeHomePath; -} - -void QtIconLoaderImplementation::lookupIconTheme() const -{ - -#ifdef Q_WS_X11 - QString dataDirs = QLatin1String(getenv("XDG_DATA_DIRS")); - if (dataDirs.isEmpty()) - dataDirs = QLatin1String("/usr/local/share/:/usr/share/"); - - dataDirs.prepend(QDir::homePath() + QLatin1String("/:")); - iconDirs = dataDirs.split(QLatin1String(":")); - - // If we are running GNOME we resolve and use GConf. In all other - // cases we currently use the KDE icon theme - - if (qgetenv("DESKTOP_SESSION") == "gnome" || - !qgetenv("GNOME_DESKTOP_SESSION_ID").isEmpty()) { - - if (themeName.isEmpty()) { - // Resolve glib and gconf - - p_g_type_init = (Ptr_g_type_init)QLibrary::resolve(QLatin1String("gobject-2.0"), 0, "g_type_init"); - p_gconf_client_get_default = (Ptr_gconf_client_get_default)QLibrary::resolve(QLatin1String("gconf-2"), 4, "gconf_client_get_default"); - p_gconf_client_get_string = (Ptr_gconf_client_get_string)QLibrary::resolve(QLatin1String("gconf-2"), 4, "gconf_client_get_string"); - p_g_object_unref = (Ptr_g_object_unref)QLibrary::resolve(QLatin1String("gobject-2.0"), 0, "g_object_unref"); - p_g_error_free = (Ptr_g_error_free)QLibrary::resolve(QLatin1String("glib-2.0"), 0, "g_error_free"); - p_g_free = (Ptr_g_free)QLibrary::resolve(QLatin1String("glib-2.0"), 0, "g_free"); - - if (p_g_type_init && p_gconf_client_get_default && - p_gconf_client_get_string && p_g_object_unref && - p_g_error_free && p_g_free) { - - p_g_type_init(); - GConfClient* client = p_gconf_client_get_default(); - GError *err = 0; - - char *str = p_gconf_client_get_string(client, "/desktop/gnome/interface/icon_theme", &err); - if (!err) { - themeName = QString::fromUtf8(str); - p_g_free(str); - } - - p_g_object_unref(client); - if (err) - p_g_error_free (err); - } - if (themeName.isEmpty()) - themeName = QLatin1String("gnome"); - } - - if (!themeName.isEmpty()) - return; - } - - // KDE (and others) - if (dataDirs.isEmpty()) - dataDirs = QLatin1String("/usr/local/share/:/usr/share/"); - - dataDirs += QLatin1Char(':') + kdeHome() + QLatin1String("/share"); - dataDirs.prepend(QDir::homePath() + QLatin1String("/:")); - QStringList kdeDirs = QString::fromLocal8Bit(getenv("KDEDIRS")).split(QLatin1Char(':')); - foreach (const QString dirName, kdeDirs) - dataDirs.append(QLatin1String(":") + dirName + QLatin1String("/share")); - iconDirs = dataDirs.split(QLatin1Char(':')); - - QFileInfo fileInfo(QLatin1String("/usr/share/icons/default.kde")); - QDir dir(fileInfo.canonicalFilePath()); - int kdeVersion = qgetenv("KDE_SESSION_VERSION").toInt(); - QString kdeDefault = kdeVersion >= 4 ? QString::fromLatin1("oxygen") : QString::fromLatin1("crystalsvg"); - QString defaultTheme = fileInfo.exists() ? dir.dirName() : kdeDefault; - QSettings settings(kdeHome() + QLatin1String("/share/config/kdeglobals"), QSettings::IniFormat); - settings.beginGroup(QLatin1String("Icons")); - themeName = settings.value(QLatin1String("Theme"), defaultTheme).toString(); -#endif -} - -QIconTheme QtIconLoaderImplementation::parseIndexFile(const QString &themeName) const -{ - QIconTheme theme; - QFile themeIndex; - QStringList parents; - QHash dirList; - for ( int i = 0 ; i < iconDirs.size() && !themeIndex.exists() ; ++i) { - const QString &contentDir = QLatin1String(iconDirs[i].startsWith(QDir::homePath()) ? "/.icons/" : "/icons/"); - themeIndex.setFileName(iconDirs[i] + contentDir + themeName + QLatin1String("/index.theme")); - } - - if (themeIndex.open(QIODevice::ReadOnly | QIODevice::Text)) { - - QTextStream in(&themeIndex); - - while (!in.atEnd()) { - - QString line = in.readLine(); - - if (line.startsWith(QLatin1String("Inherits="))) { - line = line.right(line.length() - 9); - parents = line.split(QLatin1Char(',')); - } - - if (line.startsWith(QLatin1String("["))) { - line = line.trimmed(); - line.chop(1); - QString dirName = line.right(line.length() - 1); - if (!in.atEnd()) { - line = in.readLine(); - int size; - if (line.startsWith(QLatin1String("Size="))) { - size = line.right(line.length() - 5).toInt(); - if (size) - dirList.insertMulti(size, dirName); - } - } - } - } - } - - if (kdeVersion() >= 3) { - QFileInfo fileInfo(QLatin1String("/usr/share/icons/default.kde")); - QDir dir(fileInfo.canonicalFilePath()); - QString defaultKDETheme = dir.exists() ? dir.dirName() : kdeVersion() == 3 ? - QString::fromLatin1("crystalsvg") : QString::fromLatin1("oxygen"); - if (!parents.contains(defaultKDETheme) && themeName != defaultKDETheme) - parents.append(defaultKDETheme); - } else if (parents.isEmpty() && themeName != QLatin1String("hicolor")) { - parents.append(QLatin1String("hicolor")); - } - - theme = QIconTheme(dirList, parents); - return theme; -} - -QPixmap QtIconLoaderImplementation::findIconHelper(int size, const QString &themeName, - const QString &iconName, QStringList &visited) const -{ - QPixmap pixmap; - - if (!themeName.isEmpty()) { - visited << themeName; - QIconTheme theme = themeList.value(themeName); - - if (!theme.isValid()) { - theme = parseIndexFile(themeName); - themeList.insert(themeName, theme); - } - - if (!theme.isValid()) - return QPixmap(); - - QList subDirs = theme.dirList().values(size); - - for ( int i = 0 ; i < iconDirs.size() ; ++i) { - for ( int j = 0 ; j < subDirs.size() ; ++j) { - QString contentDir = (iconDirs[i].startsWith(QDir::homePath())) ? - QLatin1String("/.icons/") : QLatin1String("/icons/"); - QString fileName = iconDirs[i] + contentDir + themeName + QLatin1Char('/') + subDirs[j] + QLatin1Char('/') + iconName; - QFile file(fileName); - if (file.exists()) - pixmap.load(fileName); - if (!pixmap.isNull()) - break; - } - } - - if (pixmap.isNull()) { - QStringList parents = theme.parents(); - //search recursively through inherited themes - for (int i = 0 ; pixmap.isNull() && i < parents.size() ; ++i) { - QString parentTheme = parents[i].trimmed(); - if (!visited.contains(parentTheme)) //guard against endless recursion - pixmap = findIconHelper(size, parentTheme, iconName, visited); - } - } - } - return pixmap; -} - -QPixmap QtIconLoaderImplementation::findIcon(int size, const QString &name) const -{ - QPixmap pixmap; - QString pixmapName = QLatin1String("$qt") + name + QString::number(size); - if (QPixmapCache::find(pixmapName, pixmap)) - return pixmap; - - if (!themeName.isEmpty()) { - QStringList visited; - pixmap = findIconHelper(size, themeName, name, visited); - } - QPixmapCache::insert(pixmapName, pixmap); - return pixmap; -} -#endif //Q_WS_X11 diff --git a/branches/ColorViewer/ExternalCode/qticonloader/qticonloader.h b/branches/ColorViewer/ExternalCode/qticonloader/qticonloader.h deleted file mode 100644 index 67c8f053..00000000 --- a/branches/ColorViewer/ExternalCode/qticonloader/qticonloader.h +++ /dev/null @@ -1,44 +0,0 @@ -/**************************************************************************** -** -** Copyright (C) 2009 Nokia Corporation and/or its subsidiary(-ies). -** Contact: Qt Software Information (qt-info@nokia.com) -** -** This file is part of the QtIconLoader project on Qt Software Labs. -** -** Commercial Usage -** Licensees holding valid Qt Commercial licenses may use this file in -** accordance with the Qt Commercial License Agreement provided with the -** Software or, alternatively, in accordance with the terms contained in -** a written agreement between you and Nokia. -** -** -** GNU General Public License Usage -** Alternatively, this file may be used under the terms of the GNU -** General Public License versions 2.0 or 3.0 as published by the Free -** Software Foundation and appearing in the file LICENSE.GPL included in -** the packaging of this file. Please review the following information -** to ensure GNU General Public Licensing requirements will be met: -** http://www.fsf.org/licensing/licenses/info/GPLv2.html and -** http://www.gnu.org/copyleft/gpl.html. In addition, as a special -** exception, Nokia gives you certain additional rights. These rights -** are described in the Nokia Qt GPL Exception version 1.3, included in -** the file GPL_EXCEPTION.txt in this package. -** -****************************************************************************/ - -#ifndef QTICONLOADER_H -#define QTICONLOADER_H - -#include - -// This is the QtIconLoader -// Version 0.1 -// - -class QtIconLoader -{ -public: - static QIcon icon(const QString &name, const QIcon &fallback = QIcon()); -}; - -#endif // QTICONLOADER_H diff --git a/branches/ColorViewer/ExternalCode/vtkLSM/lzw.h b/branches/ColorViewer/ExternalCode/vtkLSM/lzw.h deleted file mode 100644 index 97a89198..00000000 --- a/branches/ColorViewer/ExternalCode/vtkLSM/lzw.h +++ /dev/null @@ -1,150 +0,0 @@ -/* - * LZW decoding - * Copyright (c) 2003 Fabrice Bellard - * Copyright (c) 2006 Konstantin Shishkov. - * Licensed under LGPL, see Licenses/LGPL for full license - */ -#define LZW_MAXBITS 12 -#define LZW_SIZTABLE (1<bbits < s->cursize) { - s->bbuf = (s->bbuf << 8) | (*s->pbuf++); - s->bbits += 8; - } - c = s->bbuf >> (s->bbits - s->cursize); - s->bbits -= s->cursize; - return c & s->curmask; -} - - -int lzw_decode_init(LZWState *p, int csize, unsigned char *buf, int buf_size) -{ - struct LZWState *s = (struct LZWState *)p; - - if(csize < 1 || csize > LZW_MAXBITS) - return -1; - /* read buffer */ - s->pbuf = buf; - s->ebuf = s->pbuf + buf_size; - s->bbuf = 0; - s->bbits = 0; - s->bs = 0; - - /* decoder */ - s->codesize = csize; - s->cursize = s->codesize + 1; - s->curmask = mask[s->cursize]; - s->top_slot = 1 << s->cursize; - s->clear_code = 1 << s->codesize; - s->end_code = s->clear_code + 1; - s->slot = s->newcodes = s->clear_code + 2; - s->oc = s->fc = -1; - s->sp = s->stack; - - s->extra_slot = 1; - return 0; -} - -/** - * Decode given number of bytes - * NOTE: the algorithm here is inspired from the LZW GIF decoder - * written by Steven A. Bennett in 1987. - */ -int lzw_decode(LZWState *p, unsigned char *buf, int len){ - int l, c, code, oc, fc; - unsigned char *sp; - struct LZWState *s = (struct LZWState *)p; - - if (s->end_code < 0) - return 0; - - l = len; - sp = s->sp; - oc = s->oc; - fc = s->fc; - - for (;;) { - while (sp > s->stack) { - *buf++ = *(--sp); - if ((--l) == 0) - goto the_end; - } - c = lzw_get_code(s); - if (c == s->end_code) { - break; - } else if (c == s->clear_code) { - s->cursize = s->codesize + 1; - s->curmask = mask[s->cursize]; - s->slot = s->newcodes; - s->top_slot = 1 << s->cursize; - fc= oc= -1; - } else { - code = c; - if (code == s->slot && fc>=0) { - *sp++ = fc; - code = oc; - }else if(code >= s->slot) - break; - while (code >= s->newcodes) { - *sp++ = s->suffix[code]; - code = s->prefix[code]; - } - *sp++ = code; - if (s->slot < s->top_slot && oc>=0) { - s->suffix[s->slot] = code; - s->prefix[s->slot++] = oc; - } - fc = code; - oc = c; - if (s->slot >= s->top_slot - s->extra_slot) { - if (s->cursize < LZW_MAXBITS) { - s->top_slot <<= 1; - s->curmask = mask[++s->cursize]; - } - } - } - } - s->end_code = -1; -the_end: - s->sp = sp; - s->oc = oc; - s->fc = fc; - return len - l; -} \ No newline at end of file diff --git a/branches/ColorViewer/ExternalCode/vtkLSM/vtkLSMReader.cxx b/branches/ColorViewer/ExternalCode/vtkLSM/vtkLSMReader.cxx deleted file mode 100644 index 7bdf8c06..00000000 --- a/branches/ColorViewer/ExternalCode/vtkLSM/vtkLSMReader.cxx +++ /dev/null @@ -1,1657 +0,0 @@ -/*========================================================================= - - Program: BioImageXD - Module: $RCSfile: vtkLSMReader.cxx,v $ - Language: C++ - Date: $Date: 2003/08/22 14:46:02 $ - Version: $Revision: 1.39 $ - - This is an open-source copyright as follows: - Copyright (c) 2004-2008 BioImageXD Development Team - - All rights reserved. - - Redistribution and use in source and binary forms, with or without - modification, are permitted provided that the following conditions are met: - - * Redistributions of source code must retain the above copyright notice, - this list of conditions and the following disclaimer. - - * Redistributions in binary form must reproduce the above copyright notice, - this list of conditions and the following disclaimer in the documentation - and/or other materials provided with the distribution. - - * Modified source versions must be plainly marked as such, and must not be - misrepresented as being the original software. - - THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS ``AS - IS'' AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, - THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR - PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL THE AUTHORS OR CONTRIBUTORS BE - LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR - CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF - SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS - INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN - CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) - ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE - POSSIBILITY OF SUCH DAMAGE. - -=========================================================================*/ - -/*========================================================================= - Modifications were made by the GoFigure Dev. Team. - while at Megason Lab, Systems biology, Harvard Medical school, 2009 - - Copyright (c) 2009, President and Fellows of Harvard College. - All rights reserved. - - Redistribution and use in source and binary forms, with or without - modification, are permitted provided that the following conditions are met: - - Redistributions of source code must retain the above copyright notice, - this list of conditions and the following disclaimer. - Redistributions in binary form must reproduce the above copyright notice, - this list of conditions and the following disclaimer in the documentation - and/or other materials provided with the distribution. - Neither the name of the President and Fellows of Harvard College - nor the names of its contributors may be used to endorse or promote - products derived from this software without specific prior written - permission. - - THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS - "AS IS" AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, - THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR - PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT OWNER OR CONTRIBUTORS - BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, - OR CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT - OF SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR PROFITS; - OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, - WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE - OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF - ADVISED OF THE POSSIBILITY OF SUCH DAMAGE. - - =========================================================================*/ - - -#include "vtkLSMReader.h" -#include "vtkObjectFactory.h" -#include "vtkImageData.h" -#include "vtkSource.h" -#include "vtkPointData.h" -#include "vtkByteSwap.h" -#include "vtkInformation.h" -#include "vtkInformationVector.h" -#include "vtkStreamingDemandDrivenPipeline.h" -#include - - -#define PRT_EXT(ext) ext[0],ext[1],ext[2],ext[3],ext[4],ext[5] -#define PRT_EXT2(ext) ext[0]<<","<SetNumberOfInputPorts(0); - this->SetNumberOfOutputPorts(1); - this->ChannelDataTypes = 0; - this->TrackWavelengths = 0; - this->ImageOffsets = 0; - this->ReadSizes = 0; - this->Clean(); -} - -vtkLSMReader::~vtkLSMReader() -{ - this->ClearFileName(); - this->ClearChannelNames(); - this->ChannelColors->Delete(); - this->BitsPerSample->Delete(); - this->StripOffset->Delete(); - this->StripByteCount->Delete(); - this->LaserNames->Delete(); - if(this->TrackWavelengths) { - this->TrackWavelengths->Delete(); - } - if(this->ChannelDataTypes) { - this->ChannelDataTypes->Delete(); - } - if(this->ImageOffsets) { - this->ImageOffsets->Delete(); - this->ImageOffsets = 0; - this->ReadSizes->Delete(); - this->ReadSizes = 0; - } - -} - -void vtkLSMReader::ClearFileName() -{ - if (this->File) - { - this->File->close(); - delete this->File; - this->File = NULL; - } - - if (this->FileName) - { - delete [] this->FileName; - this->FileName = NULL; - } -} -//---------------------------------------------------------------------------- -// This function sets the name of the file. -void vtkLSMReader::SetFileName(const char *name) -{ - if ( this->FileName && name && (!strcmp(this->FileName,name))) - { - return; - } - if (!name && !this->FileName) - { - return; - } - if (this->FileName) - { - delete [] this->FileName; - } - if (name) - { - this->FileName = new char[strlen(name) + 1]; - strcpy(this->FileName, name); - } - else - { - this->FileName = NULL; - } - this->NeedToReadHeaderInformationOn(); - this->Modified(); -} - - -void vtkLSMReader::Clean() -{ - - this->IntUpdateExtent[0] = this->IntUpdateExtent[1] = this->IntUpdateExtent[2] = this->IntUpdateExtent[4] = 0; - this->IntUpdateExtent[3] = this->IntUpdateExtent[5] = 0; - - this->DataExtent[0] = this->DataExtent[1] = this->DataExtent[2] = this->DataExtent[4] = 0; - this->DataExtent[3] = this->DataExtent[5] = 0; - this->OffsetToLastAccessedImage = 0; - this->NumberOfLastAccessedImage = 0; - this->FileNameChanged = 0; - this->FileName = NULL; - this->File = NULL; - this->VoxelSizes[0] = this->VoxelSizes[1] = this->VoxelSizes[2] = 0.0; - this->Identifier = 0; - - - this->LaserNames = vtkStringArray::New(); - this->TrackWavelengths = vtkDoubleArray::New(); - this->DataSpacing[0] = this->DataSpacing[1] = this->DataSpacing[2] = 1.0f; - this->Dimensions[0] = this->Dimensions[1] = this->Dimensions[2] = this->Dimensions[3] = this->Dimensions[4] = 0; - this->NewSubFileType = 0; - this->BitsPerSample = vtkUnsignedShortArray::New(); - this->BitsPerSample->SetNumberOfTuples(4); - this->BitsPerSample->SetNumberOfComponents(1); - this->Compression = 0; - this->StripOffset = vtkUnsignedIntArray::New(); - this->StripOffset->SetNumberOfTuples(4); - this->StripOffset->SetNumberOfComponents(1); - this->SamplesPerPixel = 0; - this->StripByteCount = vtkUnsignedIntArray::New(); - this->StripByteCount->SetNumberOfTuples(4); - this->StripByteCount->SetNumberOfComponents(1); - this->Predictor = 0; - this->PhotometricInterpretation = 0; - this->PlanarConfiguration = 0; - this->ColorMapOffset = 0; - this->LSMSpecificInfoOffset = 0; - this->NumberOfIntensityValues[0] = this->NumberOfIntensityValues[1] = - this->NumberOfIntensityValues[2] = this->NumberOfIntensityValues[3] = 0; - this->ScanType = 0; - this->DataType = 0; - this->ChannelColors = vtkIntArray::New(); - this->ChannelNames = NULL; - this->TimeStampInformation = vtkDoubleArray::New(); -} - - int vtkLSMReader::OpenFile() -{ - if (!this->FileName) - { - vtkErrorMacro(<<"FileName must be specified."); - return 0; - } - - // Close file from any previous image - if (this->File) - { - this->File->close(); - delete this->File; - this->File = NULL; - } - - // Open the new file -#ifdef _WIN32 - this->File = new ifstream(this->FileName, ios::in | ios::binary); -#else - this->File = new ifstream(this->FileName, ios::in); -#endif - if (! this->File || this->File->fail()) - { - vtkErrorMacro(<< "OpenFile: Could not open file " <FileName); - return 0; - } - return 1; -} - - -void vtkLSMReader::SetDataByteOrderToBigEndian() -{ -#ifndef VTK_WORDS_BIGENDIAN - this->SwapBytesOn(); -#else - this->SwapBytesOff(); -#endif -} - -void vtkLSMReader::SetDataByteOrderToLittleEndian() -{ -#ifdef VTK_WORDS_BIGENDIAN - this->SwapBytesOn(); -#else - this->SwapBytesOff(); -#endif -} - -void vtkLSMReader::SetDataByteOrder(int byteOrder) -{ - if ( byteOrder == VTK_FILE_BYTE_ORDER_BIG_ENDIAN ) - { - this->SetDataByteOrderToBigEndian(); - } - else - { - this->SetDataByteOrderToLittleEndian(); - } -} - -int vtkLSMReader::GetDataByteOrder() -{ -#ifdef VTK_WORDS_BIGENDIAN - if ( this->SwapBytes ) - { - return VTK_FILE_BYTE_ORDER_LITTLE_ENDIAN; - } - else - { - return VTK_FILE_BYTE_ORDER_BIG_ENDIAN; - } -#else - if ( this->SwapBytes ) - { - return VTK_FILE_BYTE_ORDER_BIG_ENDIAN; - } - else - { - return VTK_FILE_BYTE_ORDER_LITTLE_ENDIAN; - } -#endif -} - -const char *vtkLSMReader::GetDataByteOrderAsString() -{ -#ifdef VTK_WORDS_BIGENDIAN - if ( this->SwapBytes ) - { - return "LittleEndian"; - } - else - { - return "BigEndian"; - } -#else - if ( this->SwapBytes ) - { - return "BigEndian"; - } - else - { - return "LittleEndian"; - } -#endif -} - - -char* vtkLSMReader::GetChannelName(int chNum) -{ - if(!this->ChannelNames || chNum < 0 || chNum > this->GetNumberOfChannels()-1) - { - vtkDebugMacro(<<"GetChannelName: Illegal channel index!"); - return ""; - } - return this->ChannelNames[chNum]; -} - -int vtkLSMReader::ClearChannelNames() -{ - vtkDebugMacro(<<"clearing " << this->GetNumberOfChannels()<<"channel names"); - if(!this->ChannelNames || this->GetNumberOfChannels() < 1) - { - return 0; - } - - for(int i=0;iGetNumberOfChannels();i++) - { - delete [] this->ChannelNames[i]; - } - vtkDebugMacro(<<"almost done\n"); - delete [] this->ChannelNames; - vtkDebugMacro(<<"done"); - return 0; -} - -int vtkLSMReader::AllocateChannelNames(int chNum) -{ - this->ClearChannelNames(); - vtkDebugMacro(<<"allocating space for "<ChannelNames = new char*[chNum]; - if(!this->ChannelNames) - { - vtkErrorMacro(<<"Could not allocate memory for channel name table!"); - return 1; - } - for(int i=0;iChannelNames[i] = NULL; - } - return 0; -} - -int vtkLSMReader::SetChannelName(const char *chName, int chNum) -{ - char *name; - int length; - if(!chName || chNum > this->GetNumberOfChannels()) - { - return 0; - } - if(!this->ChannelNames) - { - this->AllocateChannelNames(this->GetNumberOfChannels()); - } - - length = strlen(chName); - vtkDebugMacro(<<"length="<ChannelNames[chNum] = name; - return 0; -} - -int vtkLSMReader::FindChannelNameStart(const char *nameBuff, int length) -{ - int i; - char ch; - for(i=0;i 32) - { - break; - } - } - if(i >= length) - { - vtkWarningMacro(<<"Start of the channel name may not be found!"); - } - return i; -} - -int vtkLSMReader::ReadChannelName(const char *nameBuff, int length, char *buffer) -{ - int i; - char component; - for(i=0;iGetNumberOfChannels(); - this->ChannelDataTypes = vtkUnsignedIntArray::New(); - this->ChannelDataTypes->SetNumberOfTuples(numOfChls); - this->ChannelDataTypes->SetNumberOfComponents(1); - for(unsigned int i=0; i < numOfChls; i++) { - dataType = this->ReadUnsignedInt(f, &pos); - this->ChannelDataTypes->SetValue(i, dataType); - vtkDebugMacro(<<"Channel "<ReadInt(f,&pos); - //vtkDebugMacro(<<"size of structure = "<ReadInt(f,&pos); - // Read number of names - nameNum = this->ReadInt(f,&pos); - //vtkDebugMacro(<<"nameNum="<GetNumberOfChannels()) - { - vtkDebugMacro(<<"Number of channel colors is not same as number of channels!"); - vtkDebugMacro(<<"numColors="<ChannelColors->Reset(); - this->ChannelColors->SetNumberOfValues(3*(colNum+1)); - this->ChannelColors->SetNumberOfComponents(3); - - - // Read the colors - for(int j = 0; j < this->GetNumberOfChannels(); j++) - { - this->ReadFile(f,&colorOffset,4,colorBuff,1); - - for(int i=0;i<3;i++) - { - component = this->CharPointerToUnsignedChar(colorBuff+i); - - this->ChannelColors->SetValue(i+(3*j),component); - } - } - - this->ReadFile(f,&nameOffset,sizeOfNames,nameBuff,1); - - nameLength = nameSkip = 0; - tempBuff = nameBuff; - for(int i = 0; i < this->GetNumberOfChannels(); i++) - { - nameSkip = this->FindChannelNameStart(tempBuff,sizeOfNames-nameSkip); - nameLength = this->ReadChannelName(tempBuff+nameSkip,sizeOfNames-nameSkip,name); - - tempBuff += nameSkip + nameLength; - vtkDebugMacro(<<"Setting channel "<SetChannelName(name,i); - } - - delete [] nameBuff; - delete [] name; - delete [] colorBuff; - return 0; -} - -int vtkLSMReader::ReadTimeStampInformation(ifstream *f,unsigned long offset) -{ - int numOffStamps = 0; - if( offset == 0 ) // position is 0 for non-timeseries files! - { - vtkDebugMacro(<<"No timestamp information available"); - return 0; - } - offset += 4; - numOffStamps = this->ReadInt(f,&offset); - vtkDebugMacro(<<"There are "<GetNumberOfTimePoints()) - { -// vtkWarningMacro(<<"Number of time stamps does not correspond to the number off time points!"); - } - this->TimeStampInformation->Reset(); - this->TimeStampInformation->SetNumberOfTuples(numOffStamps); - this->TimeStampInformation->SetNumberOfComponents(1); - for(int i=0;iTimeStampInformation->SetValue(i,this->ReadDouble(f,&offset)); - } - return 0; -} - -/* Read the TIF_CZ_LSMINFO entry described in Table 17 of the LSM file format specification - * - * - */ -int vtkLSMReader::ReadLSMSpecificInfo(ifstream *f,unsigned long pos) -{ - unsigned long offset; - vtkDebugMacro("ReadLSMSpecificInfo(stream,"<NumberOfIntensityValues[0] = this->ReadInt(f,&pos); - - // vtkByteSwap::Swap4LE((int*)&this->NumberOfIntensityValues[0]); - this->Dimensions[0] = this->NumberOfIntensityValues[0]; - // Y - this->NumberOfIntensityValues[1] = this->ReadInt(f,&pos); - this->Dimensions[1] = this->NumberOfIntensityValues[1]; - // and Z dimension - this->NumberOfIntensityValues[2] = this->ReadInt(f,&pos); - this->Dimensions[2] = this->NumberOfIntensityValues[2]; - vtkDebugMacro(<<"Dimensions =" << Dimensions[0]<<","<Dimensions[4] = this->ReadInt(f,&pos); - vtkDebugMacro(<<"Number of Channels"<Dimensions[4]<<"\n"); - - // Read number of timepoints - this->NumberOfIntensityValues[3] = this->ReadInt(f,&pos); - this->Dimensions[3] = this->NumberOfIntensityValues[3]; - - // Read datatype, 1 for 8-bit unsigned int - // 2 for 12-bit unsigned int - // 5 for 32-bit float (timeseries mean of ROIs) - // 0 if the channels have different types - // In that case, u32OffsetChannelDataTypes - // has further info - this->DataType = this->ReadInt(f,&pos); - vtkDebugMacro(<<"Data type="<DataType<<"\n"); - - // Skip the width and height of thumbnails - pos += 2 * 4; - - // Read voxel sizes - this->VoxelSizes[0] = this->ReadDouble(f,&pos); - this->VoxelSizes[1] = this->ReadDouble(f,&pos); - this->VoxelSizes[2] = this->ReadDouble(f,&pos); - vtkDebugMacro("Voxel size="<ScanType = this->ReadShort(f,&pos); - vtkDebugMacro("ScanType"<ScanType<<"\n"); - - // skip over SpectralScan flag - // if 0, no spectral scan - // if 1, image has been acquired with spectral scan mode with a "meta" detector - // skip over DataType, Offset to vector overlay, Offset to input LUT - pos += 1*2 + 4*4;// + 1*8 + 3*4; - - // Read OffsetChannelColors, which is an offset to channel colors and names - this->ChannelInfoOffset = this->ReadUnsignedInt(f,&pos); - vtkDebugMacro(<<"Channel info offset (from addr"<ChannelInfoOffset<<"\n"); - this->ReadChannelColorsAndNames(f,this->ChannelInfoOffset); - - // Skip time interval in seconds (8 bytes) - //pos += 1*8; - this->TimeInterval = this->ReadDouble(f, &pos); - printf("Time interval = %f\n", this->TimeInterval); - - // If each channel has different datatype (meaning DataType == 0), then - // read the offset to more information and read the info - this->ChannelDataTypesOffset = this->ReadInt(f, &pos); - unsigned long scanInformationOffset = this->ReadUnsignedInt(f, &pos); - if(this->DataType == 0) { - this->ReadChannelDataTypes(f, this->ChannelDataTypesOffset); - } - - // Read scan information - printf("Scan information offset = %ld\n", scanInformationOffset); - this->ReadScanInformation(f, scanInformationOffset); - // SKip Zeiss Vision KS-3D speific data - pos += 4; - // Read timestamp information - offset = this->ReadUnsignedInt(f,&pos); - this->ReadTimeStampInformation(f,offset); - - - return 1; -} -int vtkLSMReader::ReadScanInformation(ifstream* f, unsigned long pos) -{ - unsigned int entry, type, size; - unsigned int subblocksOpen = 0; - char* name; - double gain; - double wavelength; - int mode; - char* chName; - int chIsOn = 0, trackIsOn = 0, isOn = 0; - while( 1 ) { - entry = this->ReadUnsignedInt(f, &pos); - type = this->ReadUnsignedInt(f, &pos); - size = this->ReadUnsignedInt(f, &pos); - - //printf("entry=%d\n", entry); - if(type == TYPE_SUBBLOCK && entry == SUBBLOCK_END) subblocksOpen--; - else if(type == TYPE_SUBBLOCK) { - subblocksOpen++; - } - - switch(entry) { - case DETCHANNEL_ENTRY_DETECTOR_GAIN_FIRST: - gain = this->ReadDouble(f, &pos); - continue; - break; - case DETCHANNEL_ENTRY_DETECTOR_GAIN_LAST: - gain = this->ReadDouble(f, &pos); - continue; - break; - case DETCHANNEL_ENTRY_INTEGRATION_MODE: - mode = this->ReadInt(f, &pos); - continue; - break; - case LASER_ENTRY_NAME: - name = new char[size+1]; - this->ReadData(f, &pos, size, name); - //printf("Laser name: %s\n", name); - this->LaserNames->InsertNextValue(name); - delete[] name; - continue; - break; - case ILLUMCHANNEL_ENTRY_WAVELENGTH: - wavelength = this->ReadDouble(f, &pos); - - continue; - break; - case ILLUMCHANNEL_DETCHANNEL_NAME: - chName = new char[size+1]; - this->ReadData(f, &pos, size, chName); -// printf("chName = %s\n", chName); - delete[] chName; - continue; - break; - case TRACK_ENTRY_ACQUIRE: - trackIsOn = this->ReadInt(f, &pos); - - continue; - break; - case TRACK_ENTRY_NAME: - chName = new char[size+1]; - this->ReadData(f, &pos, size, chName); - if(trackIsOn) { - // printf("Track name = %s is on\n", chName); - } - delete[] chName; - continue; - break; - case DETCHANNEL_DETECTION_CHANNEL_NAME: - chName = new char[size+1]; - this->ReadData(f, &pos, size, chName); - if(chIsOn) { - //printf("Detection channel name = %s is on\n", chName); - } - delete[] chName; - continue; - break; - case DETCHANNEL_ENTRY_ACQUIRE: - chIsOn = this->ReadInt(f, &pos); - continue; - break; - - case ILLUMCHANNEL_ENTRY_AQUIRE: - isOn = this->ReadInt(f, &pos); - if(isOn) { - if(trackIsOn) { - this->TrackWavelengths->InsertNextValue(wavelength); - //printf("Acquired using wavelength: %f\n", wavelength); - } - } - continue; - break; - case RECORDING_ENTRY_DESCRIPTION: - Description = new char[size+1]; - this->ReadData(f, &pos, size, Description); - //printf("Description: %s\n", Description); - continue; - break; - case RECORDING_ENTRY_OBJETIVE: - Objective = new char[size+1]; - this->ReadData(f, &pos, size, Objective); - continue; - - case SUBBLOCK_RECORDING: - break; - case SUBBLOCK_LASERS: - break; - case SUBBLOCK_LASER: - break; - case SUBBLOCK_TRACKS: - break; - case SUBBLOCK_TRACK: - break; - case SUBBLOCK_DETECTION_CHANNELS: - break; - case SUBBLOCK_DETECTION_CHANNEL: - break; - case SUBBLOCK_ILLUMINATION_CHANNELS: - break; - case SUBBLOCK_ILLUMINATION_CHANNEL: - break; - case SUBBLOCK_BEAM_SPLITTERS: - break; - case SUBBLOCK_BEAM_SPLITTER: - break; - case SUBBLOCK_DATA_CHANNELS: - break; - case SUBBLOCK_DATA_CHANNEL: - break; - case SUBBLOCK_TIMERS: - break; - case SUBBLOCK_TIMER: - break; - case SUBBLOCK_MARKERS: - break; - case SUBBLOCK_MARKER: - break; - } - if(subblocksOpen == 0) break; - // By default, skip the entry - pos += size; - } - return 0; -} -int vtkLSMReader::AnalyzeTag(ifstream *f,unsigned long startPos) -{ - unsigned short type,length,tag; - unsigned long readSize; - int value, dataSize,i; - char tempValue[4],tempValue2[4]; - char *actualValue = NULL; - //vtkDebugMacro(<<"Analyze tag start pos="<ReadUnsignedShort(f,&startPos); - type = this->ReadUnsignedShort(f,&startPos); - length = this->ReadUnsignedInt(f,&startPos); - - this->ReadFile(f,&startPos,4,tempValue); - - for(i=0;i<4;i++)tempValue2[i]=tempValue[i]; -#ifdef VTK_WORDS_BIGENDIAN - vtkByteSwap::Swap4LE((unsigned int*)tempValue2); -#endif - value = this->CharPointerToUnsignedInt(tempValue2); - - // if there is more than 4 bytes in value, - // value is an offset to the actual data - dataSize = this->TIFF_BYTES(type); - readSize = dataSize*length; - if(readSize > 4 && tag != TIF_CZ_LSMINFO) - { - actualValue = new char[readSize]; - startPos = value; - if(tag == TIF_STRIPOFFSETS ||tag == TIF_STRIPBYTECOUNTS) { - // vtkDebugMacro(<<"Reading actual value from "<ReadFile(f,&startPos,readSize,actualValue) ) { - vtkErrorMacro(<<"Failde to get strip offsets\n"); - return 0; - } - } - } - else - { - actualValue = new char[4]; - for(int o=0;o<4;o++)actualValue[o] = tempValue[o]; - } - switch(tag) - { - case TIF_NEWSUBFILETYPE: -// vtkDebugMacro(<<"New subfile type="<NewSubFileType = value; - break; - - case TIF_IMAGEWIDTH: -#ifdef VTK_WORDS_BIGENDIAN - vtkByteSwap::Swap4LE((unsigned int*)actualValue); - vtkDebugMacro(<<"Image width="<Dimensions[0] = this->CharPointerToUnsignedInt(actualValue); - //this->Dimensions[0] = value; - break; - - case TIF_IMAGELENGTH: -#ifdef VTK_WORDS_BIGENDIAN - vtkByteSwap::Swap4LE((unsigned int*)actualValue); - //this->Dimensions[1] = this->CharPointerToUnsignedInt(actualValue); - vtkDebugMacro(<<"Image length="<Dimensions[1] = value; - break; - - case TIF_BITSPERSAMPLE: -#ifdef VTK_WORDS_BIGENDIAN - vtkByteSwap::Swap2LE((unsigned short*)actualValue); -#endif - this->BitsPerSample->SetNumberOfValues(length); - unsigned short bitsPerSample; - for(i=0;iCharPointerToUnsignedShort(actualValue + (this->TIFF_BYTES(TIFF_SHORT)*i)); - this->BitsPerSample->SetValue(i,bitsPerSample); - } - break; - - case TIF_COMPRESSION: -#ifdef VTK_WORDS_BIGENDIAN - vtkByteSwap::Swap2LE((unsigned short*)actualValue); -#endif - this->Compression = this->CharPointerToUnsignedShort(actualValue); - break; - - case TIF_PHOTOMETRICINTERPRETATION: -#ifdef VTK_WORDS_BIGENDIAN - vtkByteSwap::Swap2LE((unsigned short*)actualValue); -#endif - this->PhotometricInterpretation = this->CharPointerToUnsignedShort(actualValue); - break; - - case TIF_STRIPOFFSETS: - // vtkDebugMacro(<<"Number of values="<StripOffset->SetNumberOfValues(length); -#ifdef VTK_WORDS_BIGENDIAN - vtkByteSwap::Swap4LERange((unsigned int*)actualValue,length); -#endif - if(length>1) { - for(i=0;iStripByteCount->SetNumberOfValues(length); - - if(length>1) { - for(i=0;iCharPointerToUnsignedInt(actualValue + (this->TIFF_BYTES(TIFF_LONG)*i)); - - this->StripByteCount->SetValue(i,bytecount); - // vtkDebugMacro(<<"Strip byte count of " << i <<"="<ReadSizes->GetValue(timepoint*this->Dimensions[2]+slice); -} - -unsigned int vtkLSMReader::GetSliceOffset(unsigned int timepoint, unsigned int slice) { - if(!this->ImageOffsets) { - vtkErrorMacro(<<"Request slice offset but table not constructed\n"); - return 0; - } - return this->ImageOffsets->GetValue(timepoint*this->Dimensions[2]+slice); -} - -void vtkLSMReader::ConstructSliceOffsets() -{ -// unsigned long int startPos = 2; - if(!this->ImageOffsets) { - this->ImageOffsets = vtkUnsignedIntArray::New(); - this->ReadSizes = vtkUnsignedIntArray::New(); - this->ImageOffsets->SetNumberOfTuples(this->Dimensions[2]*this->Dimensions[3]); - this->ReadSizes->SetNumberOfTuples(this->Dimensions[2]*this->Dimensions[3]); - for(int j = 0; j < this->Dimensions[2]*this->Dimensions[3]; j++) { - this->ImageOffsets->SetValue(j, 0); - this->ReadSizes->SetValue(j, 0); - } - } - int channel = this->GetUpdateChannel(); - - for(int tp = 0; tp < this->Dimensions[3]; tp++) { - for(int slice = 0; slice < this->Dimensions[2]; slice++) { - this->GetOffsetToImage(slice, tp); - unsigned long offset = this->StripOffset->GetValue(channel); - unsigned long readSize = this->StripByteCount->GetValue(channel); - this->ImageOffsets->SetValue(tp*this->Dimensions[2]+slice, offset); - this->ReadSizes->SetValue(tp*this->Dimensions[2]+slice, readSize); - } - } -} - -unsigned long vtkLSMReader::GetOffsetToImage(int slice, int timepoint) -{ - return this->SeekFile(slice+(timepoint*this->Dimensions[2])); -} - -unsigned long vtkLSMReader::SeekFile(int image) -{ - unsigned long offset = 4, finalOffset; - // int readSize = 4; - int i=0; - //unsigned short numberOfTags = 0; - int imageCount = image+1; - - if(this->OffsetToLastAccessedImage && (this->NumberOfLastAccessedImage < image)) - { - offset = this->OffsetToLastAccessedImage; - imageCount = image - this->NumberOfLastAccessedImage; -// vtkDebugMacro(<<"offset of last image: "<ReadInt(this->GetFile(),&offset); - vtkDebugMacro(<<"offset (from file): "<< offset<<"\n"); - } - - offset = this->ReadImageDirectory(this->GetFile(),offset); -// vtkDebugMacro(<<"Offset: "<NewSubFileType == 0) - { - i++; - } - finalOffset = offset; - offset = this->ReadImageDirectory(this->GetFile(),offset); - //vtkDebugMacro(<<"i="<OffsetToLastAccessedImage = finalOffset; - this->NumberOfLastAccessedImage = image; - - return finalOffset; -} - -unsigned long vtkLSMReader::ReadImageDirectory(ifstream *f,unsigned long offset) -{ - unsigned short numberOfTags=0; - unsigned long nextOffset = offset; - - //vtkDebugMacro(<<"Reading unsigned short from "<ReadUnsignedShort(f,&offset); - for(int i = 0; i < numberOfTags; i++) - { - this->AnalyzeTag(f,offset); - //vtkDebugMacro(<<"Tag analyed...\n"); - if(this->NewSubFileType == 1) { - //vtkDebugMacro(<<"Found thumbnail, get next"); - break; //thumbnail image - } - offset = offset + 12; - //vtkDebugMacro(<<"New offset="<ReadUnsignedInt(f,&nextOffset); -} - - -void vtkLSMReader::DecodeHorizontalDifferencing(unsigned char *buffer, int size) -{ - for(int i=1;iDimensions[0]; - int channel = this->GetUpdateChannel(); - int bytes = this->BYTES_BY_DATA_TYPE(this->GetDataTypeForChannel(channel)); - int lines = size / (width*bytes); - lzw_decode_init(s, 8, bufp, size); - vtkDebugMacro(<<"Size: "<Predictor == 2) { - if(bytes == 1) - this->DecodeHorizontalDifferencing(outbufp,width*bytes); - else { - this->DecodeHorizontalDifferencingUnsignedShort((unsigned short*)outbufp, width); - } - } - outbufp += width*bytes; - } - for(int i=0;i < size;i++) { - buffer[i] = outbuf[i]; - } - vtkDebugMacro(<<"Decoding done"<<"\n"); - delete s; - delete []outbuf; - -} - -int vtkLSMReader::GetDataTypeForChannel(unsigned int channel) -{ - if(this->DataType != 0) { - return this->DataType; - } - if(!this->ChannelDataTypes) return 1; - return this->ChannelDataTypes->GetValue(channel); -} - -//---------------------------------------------------------------------------- -// Convert to Imaging API -int vtkLSMReader::RequestData( - vtkInformation *vtkNotUsed(request), - vtkInformationVector **vtkNotUsed(inputVector), - vtkInformationVector *outputVector) -{ - unsigned long offset;//, imageOffset;; - unsigned char *buf, *tempBuf; - int size,readSize,numberOfPixels,timepoint,channel; - time_t start, end; - int outExtent[6]; - - if(!this->ImageOffsets) { - vtkDebugMacro(<<"Constructing slice offset table\n"); - this->ConstructSliceOffsets(); - } - - // get the info object - vtkInformation *outInfo = outputVector->GetInformationObject(0); - vtkImageData *data = this->AllocateOutputData(outInfo->Get(vtkDataObject::DATA_OBJECT())); - data->GetPointData()->GetScalars()->SetName("LSM Scalars"); - - data->GetExtent(outExtent); - if(!this->Identifier) - { - vtkDebugMacro(<<"Can not execute data since information has not been executed!"); - return 0; - } - vtkDebugMacro(<<"Update extent: " << outExtent[0]<<", "<IntUpdateExtent[3]>this->GetNumberOfTimePoints()-1?this->GetNumberOfTimePoints()-1:this->IntUpdateExtent[3]); - channel = this->GetUpdateChannel(); -// int nSlices = (outExtent[5]-outExtent[4])+1; - // std::cout <<"Timepoint="<Dimensions[0]*this->Dimensions[1]*(outExtent[5]-outExtent[4]+1 ); - int dataType = this->GetDataTypeForChannel(channel); - size = numberOfPixels * this->BYTES_BY_DATA_TYPE(dataType); - vtkDebugMacro(<<"numberOfPixels=" << numberOfPixels << ", buffer size="<GetSliceOffset(timepoint, i); - readSize = this->GetStripByteCount(timepoint, i); - - vtkDebugMacro(<<"Offset to tp "<ReadFile(this->GetFile(),&offset,readSize,(char *)tempBuf,1); - - if(bytes != readSize) { - vtkDebugMacro(<<"Asked for " << readSize<<" bytes, got "<GetFile()->fail()<<", eof: "<GetFile()->eof()<<"\n"); - this->GetFile()->clear(); - } - if(this->IsCompressed()) - { - this->DecodeLZWCompression(tempBuf,readSize); - } - tempBuf += readSize; - } - end = time (NULL); - - vtkDebugMacro(<<"Dataset generation time: "<BYTES_BY_DATA_TYPE(dataType) > 1) - { - ussarray = vtkUnsignedShortArray::New(); - ussarray->SetNumberOfComponents(1); - ussarray->SetNumberOfValues(numberOfPixels); - - ussarray->SetArray((unsigned short *)buf, numberOfPixels, 0); - data->GetPointData()->SetScalars(ussarray); - - ussarray->Delete(); - } - else - { - uscarray = vtkUnsignedCharArray::New(); - uscarray->SetNumberOfComponents(1); - uscarray->SetNumberOfValues(numberOfPixels); - - uscarray->SetArray(buf, numberOfPixels, 0); - data->GetPointData()->SetScalars(uscarray); - - uscarray->Delete(); - } - - return 1; - -} - -int vtkLSMReader::RequestUpdateExtent ( - vtkInformation* request, - vtkInformationVector** inputVector, - vtkInformationVector* outputVector) -{ - int uext[6], ext[6]; - - vtkInformation* outInfo = outputVector->GetInformationObject(0); - //vtkInformation *inInfo = inputVector[0]->GetInformationObject(0); - - outInfo->Get(vtkStreamingDemandDrivenPipeline::WHOLE_EXTENT(),ext); - // Get the requested update extent from the output. - outInfo->Get(vtkStreamingDemandDrivenPipeline::UPDATE_EXTENT(), uext); - - // If they request an update extent that doesn't cover the whole slice - // then modify the uextent - if(uext[1] < ext[1] ) uext[1] = ext[1]; - if(uext[3] < ext[3] ) uext[3] = ext[3]; - outInfo->Set(vtkStreamingDemandDrivenPipeline::UPDATE_EXTENT(), uext,6); - //request->Set(vtkStreamingDemandDrivenPipeline::REQUEST_UPDATE_EXTENT(), uext,6); - return 1; -} - -int vtkLSMReader::RequestInformation ( - - vtkInformation * vtkNotUsed( request ), - - vtkInformationVector** vtkNotUsed( inputVector ), - - vtkInformationVector * outputVector) -{ - unsigned long startPos; - unsigned int imageDirOffset; - int dataType; - - -// char buf[12]; - - vtkInformation* outInfo = outputVector->GetInformationObject(0); - - this->SetDataByteOrderToLittleEndian(); - - if(!this->NeedToReadHeaderInformation()) - { - vtkDebugMacro(<<"Don't need to read header information"); - return 1; - } - - vtkDebugMacro(<<"Executing information."); - - if(!this->OpenFile()) - { - this->Identifier = 0; - return 0; - } - - - startPos = 2; // header identifier - - this->Identifier = this->ReadUnsignedShort(this->GetFile(),&startPos); - if(!this->IsValidLSMFile()) - { - vtkErrorMacro("Given file is not a valid LSM-file."); - return 0; - } - - imageDirOffset = this->ReadUnsignedInt(this->GetFile(),&startPos); - - this->ReadImageDirectory(this->GetFile(),imageDirOffset); - - if(this->LSMSpecificInfoOffset) - { - ReadLSMSpecificInfo(this->GetFile(),(unsigned long)this->LSMSpecificInfoOffset); - } - else - { - vtkErrorMacro("Did not found LSM specific info!"); - return 0; - } - if( !(this->ScanType == 6 || this->ScanType == 0 || this->ScanType == 3) ) - { - vtkErrorMacro("Sorry! Your LSM-file must be of type 6 LSM-file (time series x-y-z) or type 0 (normal x-y-z) or type 3 (2D + time). Type of this File is " <ScanType); - return 0; - } - - vtkDebugMacro(<<"Executing information: first directory has been read."); - - this->CalculateExtentAndSpacing(this->DataExtent,this->DataSpacing); - outInfo->Set(vtkDataObject::SPACING(), this->DataSpacing, 3); - - - outInfo->Set(vtkStreamingDemandDrivenPipeline::WHOLE_EXTENT(), - this->DataExtent, 6); - - this->NumberOfScalarComponents = 1; - - int channel = this->GetUpdateChannel(); - dataType = this->GetDataTypeForChannel(channel); - if(dataType > 1) - { - this->DataScalarType = VTK_UNSIGNED_SHORT; - } - else - { - this->DataScalarType = VTK_UNSIGNED_CHAR; - } - vtkDataObject::SetPointDataActiveScalarInfo(outInfo, this->DataScalarType, - this->NumberOfScalarComponents); - - this->NeedToReadHeaderInformationOff(); - vtkDebugMacro(<<"Executing information: executed."); - return 1; -} - -void vtkLSMReader::CalculateExtentAndSpacing(int extent[6],double spacing[3]) -{ - - extent[0] = extent[2] = extent[4] = 0; - extent[1] = this->Dimensions[0]-1; - extent[3] = this->Dimensions[1]-1; - extent[5] = this->Dimensions[2]-1; - - - spacing[0] = this->VoxelSizes[0]*1000000; - spacing[1] = this->VoxelSizes[1]*1000000; - spacing[2] = this->VoxelSizes[2]*1000000; -} - -//---------------------------------------------------------------------------- - -int vtkLSMReader::GetChannelColorComponent(int ch, int component) -{ - if(ch < 0 || ch > this->GetNumberOfChannels()-1 || component < 0 || component > 2) - { - return 0; - } - return *(this->ChannelColors->GetPointer((ch*3) + component)); -} - -vtkImageData* vtkLSMReader:: GetTimePointOutput(int timepoint, int channel) -{ - this->SetUpdateTimePoint(timepoint); - this->SetUpdateChannel(channel); - return this->GetOutput(); -} - -void vtkLSMReader::SetUpdateTimePoint(int timepoint) -{ - if(timepoint < 0 || timepoint == this->IntUpdateExtent[3]) - { - return; - } - this->IntUpdateExtent[3] = timepoint; - this->Modified(); -} - -void vtkLSMReader::SetUpdateChannel(int ch) -{ - if(ch < 0 || ch == this->IntUpdateExtent[4]) - { - return; - } - this->IntUpdateExtent[4] = ch; - // std::cout << "Update channel is now " << ch << std::endl; - this->Modified(); -} - -void vtkLSMReader::NeedToReadHeaderInformationOn() -{ - this->FileNameChanged = 1; -} - -void vtkLSMReader::NeedToReadHeaderInformationOff() -{ - this->FileNameChanged = 0; -} - -int vtkLSMReader::NeedToReadHeaderInformation() -{ - return this->FileNameChanged; -} - -ifstream *vtkLSMReader::GetFile() -{ - return this->File; -} - -int vtkLSMReader::BYTES_BY_DATA_TYPE(int type) -{ - int bytes = 1; - switch(type) - { - case(1): - return 1; - case(2): - return 2; - case(5): - return 4; - } - return bytes; -} - -int vtkLSMReader::TIFF_BYTES(unsigned short type) -{ - int bytes = 1; - switch(type) - { - case(TIFF_BYTE): - return 1; - case(TIFF_ASCII): - case(TIFF_SHORT): - return 2; - case(TIFF_LONG): - case(TIFF_RATIONAL): - return 4; - } - return bytes; -} - -unsigned char vtkLSMReader::CharPointerToUnsignedChar(char *buf) -{ - return *((unsigned char*)(buf)); -} - -int vtkLSMReader::CharPointerToInt(char *buf) -{ - return *((int*)(buf)); -} - -unsigned int vtkLSMReader::CharPointerToUnsignedInt(char *buf) -{ - return *((unsigned int*)(buf)); -} - -short vtkLSMReader::CharPointerToShort(char *buf) -{ - return *((short*)(buf)); -} - -unsigned short vtkLSMReader::CharPointerToUnsignedShort(char *buf) -{ - return *((unsigned short*)(buf)); -} - -double vtkLSMReader::CharPointerToDouble(char *buf) -{ - return *((double*)(buf)); -} - -int vtkLSMReader::ReadInt(ifstream *f,unsigned long *pos) -{ - char buff[4]; - this->ReadFile(f,pos,4,buff); -#ifdef VTK_WORDS_BIGENDIAN - vtkByteSwap::Swap4LE((int*)buff); -#endif - return CharPointerToInt(buff); -} - -unsigned int vtkLSMReader::ReadUnsignedInt(ifstream *f,unsigned long *pos) -{ - char buff[4]; - this->ReadFile(f,pos,4,buff); -#ifdef VTK_WORDS_BIGENDIAN - vtkByteSwap::Swap4LE((unsigned int*)buff); -#endif - return this->CharPointerToUnsignedInt(buff); -} - -short vtkLSMReader::ReadShort(ifstream *f,unsigned long *pos) -{ - char buff[2]; - this->ReadFile(f,pos,2,buff); -#ifdef VTK_WORDS_BIGENDIAN - vtkByteSwap::Swap2LE((short*)buff); -#endif - return this->CharPointerToShort(buff); -} - -unsigned short vtkLSMReader::ReadUnsignedShort(ifstream *f,unsigned long *pos) -{ - char buff[2]; - this->ReadFile(f,pos,2,buff); -#ifdef VTK_WORDS_BIGENDIAN - vtkByteSwap::Swap2LE((unsigned short*)buff); -#endif - return this->CharPointerToUnsignedShort(buff); -} - -double vtkLSMReader::ReadDouble(ifstream *f,unsigned long *pos) -{ - char buff[8]; - this->ReadFile(f,pos,8,buff); -#ifdef VTK_WORDS_BIGENDIAN - vtkByteSwap::Swap8LE((double*)buff); -#endif - return this->CharPointerToDouble(buff); -} - -int vtkLSMReader::ReadData(ifstream *f,unsigned long *pos,int size,char *buf) -{ - return this->ReadFile(f,pos,size,buf,1); -} - -int vtkLSMReader::ReadFile(ifstream *f,unsigned long *pos,int size,char *buf,bool swap) -{ - unsigned int ret = 1; - f->seekg(*pos,ios::beg); - f->read(buf,size); -#ifdef VTK_WORDS_BIGENDIAN - if(swap) { - vtkByteSwap::SwapLERange(buf,size); - } -#endif - //if(f->fail() || f->eof()) ret=0; - ret = f->gcount(); - if( !f ) return 0; - *pos = *pos + size; - return ret; -} - -unsigned int vtkLSMReader::GetUpdateChannel() { - return (this->IntUpdateExtent[4]>this->GetNumberOfChannels()-1?this->GetNumberOfChannels()-1:this->IntUpdateExtent[4]); - -} - -void vtkLSMReader::PrintSelf(ostream& os, vtkIndent indent) -{ - this->Superclass::PrintSelf(os,indent); - os << indent << "Identifier: " << this->Identifier <<"\n"; - os << indent << "Dimensions: " << this->Dimensions[0] << "," << this->Dimensions[1] << ","<Dimensions[2] << "\n"; - os << indent << "Time points: " << this->Dimensions[3] << "\n"; - os << "Number of channels: " << this->Dimensions[4] << "\n"; - os << "\n"; - os << indent << "Number of intensity values X: " << this->NumberOfIntensityValues[0] << "\n"; - os << indent << "Number of intensity values Y: " << this->NumberOfIntensityValues[1] << "\n"; - os << indent << "Number of intensity values Z: " << this->NumberOfIntensityValues[2] << "\n"; - os << indent << "Number of intensity values Time: " << this->NumberOfIntensityValues[3] << "\n"; - os << indent << "Voxel size X: " << this->VoxelSizes[0] << "\n"; - os << indent << "Voxel size Y: " << this->VoxelSizes[1] << "\n"; - os << indent << "Voxel size Z: " << this->VoxelSizes[2] << "\n"; - os << "\n"; - os << indent << "Scan type: " << this->ScanType << "\n"; - os << indent << "Data type: " << this->DataType << "\n"; - if(this->DataType == 0) { - for(int i=0; i < this->GetNumberOfChannels(); i++) { - os << indent << indent << "Data type of channel "<ChannelDataTypes->GetValue(i)<<"\n"; - } - } - os << indent << "Compression: " << this->Compression << "\n"; - os << "\n"; - os << indent << "Planar configuration: " << this->PlanarConfiguration << "\n"; - os << indent << "Photometric interpretation: " << this->PhotometricInterpretation << "\n"; - os << indent << "Predictor: " << this->Predictor << "\n"; - os << indent << "Channel info:\n"; - - for(int i=0;iDimensions[4];i++) - { - os << indent << indent << this->GetChannelName(i)<<",("<GetChannelColorComponent(i,0)<<","<GetChannelColorComponent(i,1)<<","<GetChannelColorComponent(i,2)<<")\n"; - } - os << indent << "Strip byte counts:\n"; - - for(int i=0;iDimensions[4];i++) - { - os << indent << indent << this->StripByteCount->GetValue(i) << "\n"; - } -} - diff --git a/branches/ColorViewer/ExternalCode/vtkLSM/vtkLSMReader.h b/branches/ColorViewer/ExternalCode/vtkLSM/vtkLSMReader.h deleted file mode 100644 index eedccce6..00000000 --- a/branches/ColorViewer/ExternalCode/vtkLSM/vtkLSMReader.h +++ /dev/null @@ -1,404 +0,0 @@ -/*========================================================================= - - Program: BioImageXD - Module: $RCSfile: vtkLSMReader.h,v $ - Language: C++ - Date: $Date: 2003/08/22 14:46:02 $ - Version: $Revision: 1.39 $ - - This is an open-source copyright as follows: - Copyright (c) 2004-2008 BioImageXD Development Team - - All rights reserved. - - Redistribution and use in source and binary forms, with or without - modification, are permitted provided that the following conditions are met: - - * Redistributions of source code must retain the above copyright notice, - this list of conditions and the following disclaimer. - - * Redistributions in binary form must reproduce the above copyright notice, - this list of conditions and the following disclaimer in the documentation - and/or other materials provided with the distribution. - - * Modified source versions must be plainly marked as such, and must not be - misrepresented as being the original software. - - THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS ``AS - IS'' AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, - THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR - PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL THE AUTHORS OR CONTRIBUTORS BE - LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR - CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF - SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS - INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN - CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) - ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE - POSSIBILITY OF SUCH DAMAGE. - -=========================================================================*/ - -/*========================================================================= - Modifications were made by the GoFigure Dev. Team. - while at Megason Lab, Systems biology, Harvard Medical school, 2009 - - Copyright (c) 2009, President and Fellows of Harvard College. - All rights reserved. - - Redistribution and use in source and binary forms, with or without - modification, are permitted provided that the following conditions are met: - - Redistributions of source code must retain the above copyright notice, - this list of conditions and the following disclaimer. - Redistributions in binary form must reproduce the above copyright notice, - this list of conditions and the following disclaimer in the documentation - and/or other materials provided with the distribution. - Neither the name of the President and Fellows of Harvard College - nor the names of its contributors may be used to endorse or promote - products derived from this software without specific prior written - permission. - - THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS - "AS IS" AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, - THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR - PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT OWNER OR CONTRIBUTORS - BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, - OR CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT - OF SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR PROFITS; - OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, - WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE - OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF - ADVISED OF THE POSSIBILITY OF SUCH DAMAGE. - - =========================================================================*/ - - -#define TIF_NEWSUBFILETYPE 254 -#define TIF_IMAGEWIDTH 256 -#define TIF_IMAGELENGTH 257 -#define TIF_BITSPERSAMPLE 258 -#define TIF_COMPRESSION 259 -#define TIF_PHOTOMETRICINTERPRETATION 262 -#define TIF_STRIPOFFSETS 273 -#define TIF_SAMPLESPERPIXEL 277 -#define TIF_STRIPBYTECOUNTS 279 -#define TIF_PLANARCONFIGURATION 284 -#define TIF_PREDICTOR 317 -#define TIF_COLORMAP 320 -#define TIF_CZ_LSMINFO 34412 - -#define SUBBLOCK_END 0x0FFFFFFFF -#define SUBBLOCK_RECORDING 0x010000000 -#define SUBBLOCK_LASERS 0x030000000 -#define SUBBLOCK_LASER 0x050000000 -#define SUBBLOCK_TRACKS 0x020000000 -#define SUBBLOCK_TRACK 0x040000000 -#define SUBBLOCK_DETECTION_CHANNELS 0x060000000 -#define SUBBLOCK_DETECTION_CHANNEL 0x070000000 -#define SUBBLOCK_ILLUMINATION_CHANNELS 0x080000000 -#define SUBBLOCK_ILLUMINATION_CHANNEL 0x090000000 -#define SUBBLOCK_BEAM_SPLITTERS 0x0A0000000 -#define SUBBLOCK_BEAM_SPLITTER 0x0B0000000 -#define SUBBLOCK_DATA_CHANNELS 0x0C0000000 -#define SUBBLOCK_DATA_CHANNEL 0x0D0000000 -#define SUBBLOCK_TIMERS 0x011000000 -#define SUBBLOCK_TIMER 0x012000000 -#define SUBBLOCK_MARKERS 0x013000000 -#define SUBBLOCK_MARKER 0x014000000 -#define SUBBLOCK_END 0x0FFFFFFFF - -#define RECORDING_ENTRY_NAME 0x010000001 -#define RECORDING_ENTRY_DESCRIPTION 0x010000002 -#define RECORDING_ENTRY_NOTES 0x010000003 -#define RECORDING_ENTRY_OBJETIVE 0x010000004 -#define RECORDING_ENTRY_PROCESSING_SUMMARY 0x010000005 -#define RECORDING_ENTRY_SPECIAL_SCAN_MODE 0x010000006 -#define RECORDING_ENTRY_SCAN_TYPE 0x010000007 -#define OLEDB_RECORDING_ENTRY_SCAN_MODE 0x010000008 -#define RECORDING_ENTRY_NUMBER_OF_STACKS 0x010000009 -#define RECORDING_ENTRY_LINES_PER_PLANE 0x01000000A -#define RECORDING_ENTRY_SAMPLES_PER_LINE 0x01000000B -#define RECORDING_ENTRY_PLANES_PER_VOLUME 0x01000000C -#define RECORDING_ENTRY_IMAGES_WIDTH 0x01000000D -#define RECORDING_ENTRY_IMAGES_HEIGHT 0x01000000E -#define RECORDING_ENTRY_IMAGES_NUMBER_PLANES 0x01000000F -#define RECORDING_ENTRY_IMAGES_NUMBER_STACKS 0x010000010 -#define RECORDING_ENTRY_IMAGES_NUMBER_CHANNELS 0x010000011 -#define RECORDING_ENTRY_LINSCAN_XY_SIZE 0x010000012 -#define RECORDING_ENTRY_SCAN_DIRECTION 0x010000013 -#define RECORDING_ENTRY_TIME_SERIES 0x010000014 -#define RECORDING_ENTRY_ORIGINAL_SCAN_DATA 0x010000015 -#define RECORDING_ENTRY_ZOOM_X 0x010000016 -#define RECORDING_ENTRY_ZOOM_Y 0x010000017 -#define RECORDING_ENTRY_ZOOM_Z 0x010000018 -#define RECORDING_ENTRY_SAMPLE_0X 0x010000019 -#define RECORDING_ENTRY_SAMPLE_0Y 0x01000001A -#define RECORDING_ENTRY_SAMPLE_0Z 0x01000001B -#define RECORDING_ENTRY_SAMPLE_SPACING 0x01000001C -#define RECORDING_ENTRY_LINE_SPACING 0x01000001D -#define RECORDING_ENTRY_PLANE_SPACING 0x01000001E -#define RECORDING_ENTRY_PLANE_WIDTH 0x01000001F -#define RECORDING_ENTRY_PLANE_HEIGHT 0x010000020 -#define RECORDING_ENTRY_VOLUME_DEPTH 0x010000021 -#define RECORDING_ENTRY_ROTATION 0x010000034 -#define RECORDING_ENTRY_NUTATION 0x010000023 -#define RECORDING_ENTRY_PRECESSION 0x010000035 -#define RECORDING_ENTRY_SAMPLE_0TIME 0x010000036 - - -#define LASER_ENTRY_NAME 0x050000001 -#define LASER_ENTRY_ACQUIRE 0x050000002 -#define LASER_ENTRY_POWER 0x050000003 - -#define DETCHANNEL_ENTRY_DETECTOR_GAIN_FIRST 0x070000003 -#define DETCHANNEL_ENTRY_DETECTOR_GAIN_LAST 0x070000004 -#define DETCHANNEL_ENTRY_INTEGRATION_MODE 0x070000001 -#define DETCHANNEL_ENTRY_ACQUIRE 0x07000000B -#define DETCHANNEL_DETECTION_CHANNEL_NAME 0x070000014 - -#define RECORDING_ENTRY_DESCRIPTION 0x010000002 - -#define ILLUMCHANNEL_ENTRY_WAVELENGTH 0x090000003 -#define ILLUMCHANNEL_ENTRY_AQUIRE 0x090000004 -#define ILLUMCHANNEL_DETCHANNEL_NAME 0x090000005 - -#define TRACK_ENTRY_ACQUIRE 0x040000006 -#define TRACK_ENTRY_NAME 0x04000000C -#define TYPE_SUBBLOCK 0 -#define TYPE_LONG 4 -#define TYPE_RATIONAL 5 -#define TYPE_ASCII 2 -// .NAME vtkLSMReader - read LSM files -// .SECTION Description -// vtkLSMReader is a source object that reads LSM files. -// It should be able to read most any LSM file -// -// .SECTION Thanks -// This class was developed as a part of the BioImageXD Project. -// The BioImageXD project includes the following people: -// -// Dan White -// Kalle Pahajoki -// Pasi Kankaanpää -// - - -#ifndef __vtkLSMReader_h -#define __vtkLSMReader_h - -#include "vtkImageSource.h" -#include "vtkImageAlgorithm.h" -#include "vtkIntArray.h" -#include "vtkUnsignedIntArray.h" -#include "vtkDoubleArray.h" -#include "vtkUnsignedShortArray.h" -#include "vtkUnsignedCharArray.h" -#include "vtkStringArray.h" - -#define TIFF_BYTE 1 -#define TIFF_ASCII 2 -#define TIFF_SHORT 3 -#define TIFF_LONG 4 -#define TIFF_RATIONAL 5 - -#define LSM_MAGIC_NUMBER 42 - -#define LSM_COMPRESSED 5 - -#define VTK_FILE_BYTE_ORDER_BIG_ENDIAN 0 -#define VTK_FILE_BYTE_ORDER_LITTLE_ENDIAN 1 - -class vtkLSMReader : public vtkImageAlgorithm -{ -public: - - static vtkLSMReader *New(); - vtkTypeMacro(vtkLSMReader,vtkImageAlgorithm); - virtual void PrintSelf(ostream& os, vtkIndent indent); - - // Description: - // Get the file extensions for this format. - // Returns a string with a space separated list of extensions in - // the format .extension - const char* GetFileExtensions() - { - return ".lsm .LSM"; - } - - int GetHeaderIdentifier(); - int IsValidLSMFile(); - int IsCompressed(); - int GetNumberOfTimePoints(); - int GetNumberOfChannels(); - int OpenFile(); - - int GetChannelColorComponent(int,int); - char* GetChannelName(int); - void SetFileName(const char *); - //void ExecuteInformation(); - int RequestInformation ( - vtkInformation * vtkNotUsed( request ), - vtkInformationVector** vtkNotUsed( inputVector ), - vtkInformationVector * outputVector); - void SetUpdateTimePoint(int); - void SetUpdateChannel(int); - - void SetDataByteOrderToBigEndian(); - void SetDataByteOrderToLittleEndian(); - void SetDataByteOrder(int); - int GetDataByteOrder(); - const char *GetDataByteOrderAsString(); - - // Description: - // Set/Get the byte swapping to explicitly swap the bytes of a file. - vtkSetMacro(SwapBytes,int); - virtual int GetSwapBytes() {return this->SwapBytes;} - vtkBooleanMacro(SwapBytes,int); - - int GetDataTypeForChannel(unsigned int channel); - - vtkGetStringMacro(Objective); - vtkGetStringMacro(Description); - - vtkGetStringMacro(FileName); - vtkGetVector3Macro(VoxelSizes,double); - vtkGetVectorMacro(Dimensions,int,5); - vtkGetVectorMacro(NumberOfIntensityValues,int,4); - vtkGetVectorMacro(DataSpacing,double,3); - vtkGetMacro(Identifier,unsigned short); - vtkGetMacro(NewSubFileType,unsigned int); - vtkGetMacro(Compression,unsigned int); - vtkGetMacro(SamplesPerPixel,unsigned int); - vtkGetMacro(ScanType,unsigned short); - vtkGetMacro(DataType,int); - vtkGetMacro(TimeInterval, double); - vtkGetObjectMacro(TimeStampInformation,vtkDoubleArray); - vtkGetObjectMacro(ChannelColors,vtkIntArray); - vtkGetObjectMacro(TrackWavelengths, vtkDoubleArray); - unsigned int GetUpdateChannel(); - vtkImageData* GetTimePointOutput(int,int); - -protected: - - vtkLSMReader(); - ~vtkLSMReader(); - - int TIFF_BYTES(unsigned short); - int BYTES_BY_DATA_TYPE(int); - void ClearFileName(); - void Clean(); - unsigned long ReadImageDirectory(ifstream *,unsigned long); - int AllocateChannelNames(int); - int SetChannelName(const char *,int); - int ClearChannelNames(); - int FindChannelNameStart(const char *, int); - int ReadChannelName(const char *, int, char *); - int ReadChannelDataTypes(ifstream*, unsigned long); - int ReadChannelColorsAndNames(ifstream *,unsigned long); - int ReadTimeStampInformation(ifstream *,unsigned long); - int ReadLSMSpecificInfo(ifstream *,unsigned long); - int AnalyzeTag(ifstream *,unsigned long); - int ReadScanInformation(ifstream*, unsigned long); - int NeedToReadHeaderInformation(); - void NeedToReadHeaderInformationOn(); - void NeedToReadHeaderInformationOff(); - unsigned long SeekFile(int); - unsigned long GetOffsetToImage(int, int); - ifstream *GetFile(); - - int RequestUpdateExtent ( - vtkInformation* request, - vtkInformationVector** inputVector, - vtkInformationVector* outputVector); - -int RequestData( - - vtkInformation *vtkNotUsed(request), - - vtkInformationVector **vtkNotUsed(inputVector), - - vtkInformationVector *outputVector); - - - - - //void ExecuteData(vtkDataObject *out); - void CalculateExtentAndSpacing(int extent[6],double spacing[3]); - void DecodeHorizontalDifferencing(unsigned char *,int); - void DecodeHorizontalDifferencingUnsignedShort(unsigned short*, int); - void DecodeLZWCompression(unsigned char *,int); - void ConstructSliceOffsets(); - unsigned int GetStripByteCount(unsigned int timepoint, unsigned int slice); - unsigned int GetSliceOffset(unsigned int timepoint, unsigned int slice); - - - int SwapBytes; - - int IntUpdateExtent[6]; - unsigned long OffsetToLastAccessedImage; - int NumberOfLastAccessedImage; - int FileNameChanged; - ifstream *File; - char *FileName; - double VoxelSizes[3]; - int Dimensions[5];// x,y,z,time,channels - int NumberOfIntensityValues[4]; - unsigned short Identifier; - unsigned int NewSubFileType; - vtkUnsignedShortArray *BitsPerSample; - unsigned int Compression; - vtkUnsignedIntArray *StripOffset; - vtkUnsignedIntArray *ChannelDataTypes; - vtkDoubleArray *TrackWavelengths; - unsigned int SamplesPerPixel; - vtkUnsignedIntArray *StripByteCount; - unsigned int LSMSpecificInfoOffset; - unsigned short PhotometricInterpretation; - unsigned long ColorMapOffset; - unsigned short PlanarConfiguration; - unsigned short Predictor; - unsigned short ScanType; - int DataScalarType; - - vtkUnsignedIntArray *ImageOffsets; - vtkUnsignedIntArray *ReadSizes; - vtkDoubleArray* DetectorOffsetFirstImage; - vtkDoubleArray* DetectorOffsetLastImage; - - vtkStringArray* LaserNames; - - - double DataSpacing[3]; - int DataExtent[6]; - int NumberOfScalarComponents; - int DataType; - unsigned long ChannelInfoOffset; - unsigned long ChannelDataTypesOffset; - vtkIntArray *ChannelColors; - char **ChannelNames; - vtkDoubleArray *TimeStampInformation; - char* Objective; - char* Description; - double TimeInterval; - - unsigned char CharPointerToUnsignedChar(char *); - int CharPointerToInt(char *); - unsigned int CharPointerToUnsignedInt(char *); - short CharPointerToShort(char *); - unsigned short CharPointerToUnsignedShort(char *); - double CharPointerToDouble(char *); - - int ReadInt(ifstream *,unsigned long *); - unsigned int ReadUnsignedInt(ifstream *,unsigned long *); - short ReadShort(ifstream *,unsigned long *); - unsigned short ReadUnsignedShort(ifstream *,unsigned long *); - double ReadDouble(ifstream *,unsigned long *); - int ReadFile(ifstream *,unsigned long *,int,char *,bool swap=0); - int ReadData(ifstream *,unsigned long *,int,char *); - - -private: - vtkLSMReader(const vtkLSMReader&); // Not implemented. - void operator=(const vtkLSMReader&); // Not implemented. -}; -#endif diff --git a/branches/ColorViewer/QGoMainWindow.cxx b/branches/ColorViewer/QGoMainWindow.cxx deleted file mode 100644 index 97d2832c..00000000 --- a/branches/ColorViewer/QGoMainWindow.cxx +++ /dev/null @@ -1,728 +0,0 @@ -/*========================================================================= - Authors: The GoFigure Dev. Team. - at Megason Lab, Systems biology, Harvard Medical school, 2009 - - Copyright (c) 2009, President and Fellows of Harvard College. - All rights reserved. - - Redistribution and use in source and binary forms, with or without - modification, are permitted provided that the following conditions are met: - - Redistributions of source code must retain the above copyright notice, - this list of conditions and the following disclaimer. - Redistributions in binary form must reproduce the above copyright notice, - this list of conditions and the following disclaimer in the documentation - and/or other materials provided with the distribution. - Neither the name of the President and Fellows of Harvard College - nor the names of its contributors may be used to endorse or promote - products derived from this software without specific prior written - permission. - - THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS - "AS IS" AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, - THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR - PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT OWNER OR CONTRIBUTORS - BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, - OR CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT - OF SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR PROFITS; - OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, - WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE - OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF - ADVISED OF THE POSSIBILITY OF SUCH DAMAGE. - - =========================================================================*/ - -#include "QGoMainWindow.h" - -#include - -#include -#include -#include - -#include "itkQtAdaptor.h" -#include "itkQtProgressBar.h" -#include "QColorImagePageView.h" - -#include -#include -#include - -#include "vtkImageAppendComponents.h" - -// ***************************************************************************** -QGoMainWindow::QGoMainWindow( ) -{ - this->setupUi( this ); - this->setCentralWidget( this->CentralImageTabWidget ); - this->setWindowTitle( tr( "~~>=O~~ GoFigure ~~O=<~~") ); - this->statusbar->showMessage( tr( "No data" ) ); - this->CentralImageTabWidget->clear(); - this->KishoreSegDockWidget->setVisible(false); - this->ManualSegmentationDockWidget->setVisible(false); - this->OneClickSegmentationDockWidget->setVisible(false); - this->statusbar->addPermanentWidget( &m_Bar ); - m_Bar.hide(); - //setCurrentFile(""); - -#if QT_VERSION_MAJOR == 4 && QT_VERSION_MINOR >= 5 - //NOTE: The next properties appear in Qt 4.5. - this->CentralImageTabWidget->setTabsClosable( true ); - this->CentralImageTabWidget->setTabsMovable( true ); -#endif - - m_LUTDialog = new QGoLUTDialog( this ); - - QObject::connect( this->m_LUTDialog, SIGNAL( accepted( ) ), - this, SLOT( ChangeLookupTable( ) ) ); - - /* QObject::connect( this->TracerPolygonBtn, SIGNAL( released( ) ), - this, SLOT( SetTracerToPolygonTracer() ) ); - QObject::connect( this->TracerFreeLineBtn, SIGNAL( released( ) ), - this, SLOT( SetTracerToFreeLineTracer() ) ); - QObject::connect( this->TracerTranslationBtn, SIGNAL( released() ), - this, SLOT( SetTracerToTranslateContourTracer() ) ); - QObject::connect( this->TracerRotationBtn, SIGNAL( released() ), - this, SLOT( SetTracerToRotateContourTracer() ) ); - QObject::connect( this->TracerScalingBtn, SIGNAL( released() ), - this, SLOT( SetTracerToScaleContourTracer() ) );*/ - - QObject::connect( this->ManualSegmentationOnRadioBtn, SIGNAL( toggled(bool) ), - this, SLOT( SetContourTracerOn(bool) ) ); - QObject::connect( this->ManualSegmentationOffRadioBtn, SIGNAL( toggled(bool) ), - this, SLOT( SetContourTracerOff(bool) ) ); - QObject::connect( this->IdContourColorBtn, SIGNAL( released( ) ), - this, SLOT( SetColorForGivenId( ) ) ); - QObject::connect( this->TracerValidationBtn, SIGNAL( released( ) ), - this, SLOT( ValidateContourTracer() ) ); - QObject::connect( this->TracerReinitializeBtn, SIGNAL( released() ), - this, SLOT( ReinitializeContourTracer() ) ); - //QObject::connect( this->actionOpen, SIGNAL( activated( ) ), - //this, SLOT( showprogressloading() ) ); - QObject::connect(CentralImageTabWidget,SIGNAL(currentChanged(int)),this, SLOT(UpdateFullScreenViewButtons(int))); - - Fullscreenbuttons(); - - for (int i = 0; i < MaxRecentFiles; ++i) - { - recentFileActions[i] = new QAction(this); - recentFileActions[i]->setVisible(false); - QObject::connect(this->recentFileActions[i], SIGNAL(triggered()), - this, SLOT(openRecentFile())); - } - - readSettings(); -} - -// ***************************************************************************** -QGoMainWindow::~QGoMainWindow() -{ - while( !m_PageView.empty() ) - { - delete m_PageView.last(); - m_PageView.pop_back(); - } - delete m_LUTDialog; -} - -// ***************************************************************************** -void QGoMainWindow::on_actionOpen_activated( ) -{ - // NOTE: Handling symbolic links will be done later - // (that way it requires much more code than expected) - // QFileDialog filedialog( this, tr( "Select Image" ) ); - // filedialog.setResolveSymlinks( true ); - QString filename = QFileDialog::getOpenFileName( this, tr( "Select Image" ) ); - - if( !filename.isEmpty() ) - { - SetFileName( filename ); - } -} - -// ***************************************************************************** -void QGoMainWindow::on_actionClose_activated( ) -{ - int idx = this->CentralImageTabWidget->currentIndex(); - // NOTE ALEX: should check idx against min and max of array - this->CentralImageTabWidget->removeTab( idx ); - if (idx>=0) - {delete m_PageView[idx]; - m_PageView.remove( idx ); - } - - // NOTE ALEX: - // we should remove the datasets in m_ITK, m_VTK arrays - // by default to release memory - // - // We should check if it was the last tab, in which case, - // the close option shoudl be disactivated - - writeSettings(); -} - -// ***************************************************************************** -void QGoMainWindow::on_actionClose_all_activated( ) -{ - this->CentralImageTabWidget->clear( ); - while( !m_PageView.empty() ) - { - delete m_PageView.last(); - m_PageView.pop_back(); - writeSettings(); - } -} - -// ***************************************************************************** -void QGoMainWindow::on_actionQuit_activated( ) -{ - this->close(); - writeSettings(); -} - -// ***************************************************************************** -void QGoMainWindow::on_actionBackground_activated( ) -{ - int idx = this->CentralImageTabWidget->currentIndex(); - double* rgb = m_PageView[idx]->GetBackgroundColor(); - QColor color( static_cast< int >( 255. * rgb[0] ), - static_cast< int >( 255. * rgb[1] ), - static_cast< int >( 255. * rgb[2] ) ); - m_PageView[idx]->SetBackgroundColor( QColorDialog::getColor( color, this ) ); -} - -// ***************************************************************************** -void QGoMainWindow::on_actionLookup_Table_activated( ) -{ - m_LUTDialog->show(); -} - -// ***************************************************************************** -void QGoMainWindow::on_actionQuad_View_activated( ) -{ - int idx = this->CentralImageTabWidget->currentIndex(); - m_PageView[idx]->quadview(); -} - -// ***************************************************************************** -void QGoMainWindow::on_actionFull_screen_XY_activated( ) -{ - int idx = this->CentralImageTabWidget->currentIndex(); - m_PageView[idx]->FullScreenViewXY(); -} - -// ***************************************************************************** -void QGoMainWindow::on_actionFull_screen_YZ_activated( ) -{ - int idx = this->CentralImageTabWidget->currentIndex(); - m_PageView[idx]->FullScreenView3(); -} - -// ***************************************************************************** -void QGoMainWindow::on_actionFull_screen_XZ_activated( ) -{ - int idx = this->CentralImageTabWidget->currentIndex(); - m_PageView[idx]->FullScreenView2(); -} - -// ***************************************************************************** -void QGoMainWindow::on_actionFull_screen_XYZ_activated( ) -{ - int idx = this->CentralImageTabWidget->currentIndex(); - m_PageView[idx]->FullScreenViewXYZ(); -} - -// ***************************************************************************** -void QGoMainWindow::on_actionVolume_rendering_XYZ_activated( ) -{ - int idx = this->CentralImageTabWidget->currentIndex(); - if (actionVolume_rendering_XYZ->isChecked()) - m_PageView[idx]->SetView3DToVolumeRenderingMode(); - else - m_PageView[idx]->SetView3DToTriPlanarMode(); -} - -// ***************************************************************************** -void QGoMainWindow::on_actionScale_bars_activated( ) -{ - int idx = this->CentralImageTabWidget->currentIndex(); - if (actionScale_bars->isChecked()) - m_PageView[idx]->SetShowScalarBar(true); - else - m_PageView[idx]->SetShowScalarBar(false); -} - -// ***************************************************************************** -void QGoMainWindow::SetContourTracerOn(const bool& iChecked) -{ - if( iChecked ) - { - int idx = this->CentralImageTabWidget->currentIndex(); - m_PageView[idx]->SetTracerON(); - } -} - -// ***************************************************************************** -void QGoMainWindow::SetContourTracerOff(const bool& iChecked) -{ - if( iChecked ) - { - int idx = this->CentralImageTabWidget->currentIndex(); - m_PageView[idx]->SetTracerOFF(); - } -} -// void QGoMainWindow::SetTracerToPolygonTracer() -// { -// m_PageView->SetTracerToPolygon(); -// } - -// ***************************************************************************** -// void QGoMainWindow::SetTracerToFreeLineTracer() -// { -// m_PageView->SetTracerToFreeLine(); -// } - -// ***************************************************************************** -// void QGoMainWindow::SetTracerToTranslateContourTracer() -// { -// m_PageView->SetTracerToTranslateExistingContour(); -// } - -// ***************************************************************************** -// void QGoMainWindow::SetTracerToRotateContourTracer() -// { -// m_PageView->SetTracerToRotateExistingContour(); -// } - -// ***************************************************************************** -// void QGoMainWindow::SetTracerToScaleContourTracer() -// { -// m_PageView->SetTracerToScaleExistingContour(); -// } - - -// ***************************************************************************** -void QGoMainWindow::ChangeLookupTable( ) -{ - int idx = this->CentralImageTabWidget->currentIndex(); - m_PageView[idx]->SetLookupTable( this->m_LUTDialog->GetLookupTable() ); -} - -// ***************************************************************************** -void QGoMainWindow::SetColorForGivenId( const bool& iSelect ) -{ - unsigned int cell_id = IdContourBox->value(); - - // m_PageView-> - vnl_random random( 12 ); - QColor color; - - if( cell_id < 7 ) - { - switch( cell_id ) - { - default: - case 1: - color.setHsv( 0, 255, 255 ); - break; - case 2: - color.setHsv( 60, 255, 255 ); - break; - case 3: - color.setHsv( 120, 255, 255 ); - break; - case 4: - color.setHsv( 180, 255, 255 ); - break; - case 5: - color.setHsv( 240, 255, 255 ); - break; - case 6: - color.setHsv( 300, 255, 255 ); - break; - } - } - else - { - switch( cell_id % 6 ) - { - case 0: - color.setHsv( random.lrand32( 0, 60 ), random.lrand32( 0, 255 ), random.lrand32( 0, 255 ) ); - break; - case 1: - color.setHsv( random.lrand32( 60, 120 ), random.lrand32( 0, 255 ), random.lrand32( 0, 255 ) ); - break; - case 2: - color.setHsv( random.lrand32( 120, 180 ), random.lrand32( 0, 255 ), random.lrand32( 0, 255 ) ); - break; - case 3: - color.setHsv( random.lrand32( 180, 240 ), random.lrand32( 0, 255 ), random.lrand32( 0, 255 ) ); - break; - case 4: - color.setHsv( random.lrand32( 240, 300 ), random.lrand32( 0, 255 ), random.lrand32( 0, 255 ) ); - break; - case 5: - color.setHsv( random.lrand32( 300, 360 ), random.lrand32( 0, 255 ), random.lrand32( 0, 255 ) ); - break; - } - } - - if( iSelect ) - { - m_IdColorMap[ cell_id ] = QColorDialog::getColor( color, this ); - } - else - { - m_IdColorMap[ cell_id ] = color; - } - -} - -// ***************************************************************************** -void QGoMainWindow::ValidateContourTracer( ) -{ - int idx = this->CentralImageTabWidget->currentIndex(); - unsigned int cell_id = IdContourBox->value(); - m_PageView[idx]->SetCellId( cell_id ); - - if( m_IdColorMap.find( cell_id ) == m_IdColorMap.end() ) - SetColorForGivenId( false ); - - m_PageView[idx]->ValidateContour( - cell_id, - m_IdColorMap[ cell_id ], - this->SaveContourCheckBox->isChecked() ); -} - -// ***************************************************************************** -void QGoMainWindow::ReinitializeContourTracer() -{ - int idx = this->CentralImageTabWidget->currentIndex(); - m_PageView[idx]->ReinitializeContour(); -} - - -// ***************************************************************************** -void QGoMainWindow::SetFileName( const QString& iFile ) -{ - if( QFile::exists( iFile ) ) - { - this->setCurrentFile( iFile ); - // parse extension - QFileInfo fi(iFile); - QString ext = fi.suffix(); - if( ext.compare("lsm") == 0 ) - { - this->OpenAndDisplayLSMFile( m_CurrentFile, 0, true ); - } - else - { - this->OpenImage( m_CurrentFile ); - this->DisplayImage( m_CurrentFile ); - } - } -} - -// ***************************************************************************** -void QGoMainWindow::OpenImage( const QString& iFile ) -{ - typedef itk::ImageFileReader< ImageType > ImageReaderType; - typedef ImageReaderType::Pointer ImageReaderPointer; - - ImageReaderPointer reader = ImageReaderType::New(); - reader->SetFileName( iFile.toAscii( ).constData( ) ); - - //BUG 03/23: This next line is commented for the time being since - // it makes gofigure crashing. - // this->ShowProgressLoading( reader ); - reader->Update(); - this->HideProgressLoading(); - - m_ITKImage.push_back( reader->GetOutput() ); - m_ITKImage.last()->DisconnectPipeline(); - -} - -// ***************************************************************************** -void QGoMainWindow::DisplayImage( QString iTag ) -{ - m_Convert.push_back( VTKConvertImageType::New() ); - m_Convert.last()->SetInput( m_ITKImage.last() ); - ShowProgressLoading( m_Convert.last() ); - m_Convert.last()->Update(); - HideProgressLoading(); - - m_VTKImage.push_back( m_Convert.last()->GetOutput() ); - - m_PageView.push_back( new QImagePageViewTracer ); - m_PageView.last()->SetImage( m_VTKImage.last() ); - - int idx = this->CentralImageTabWidget->addTab( m_PageView.last(), iTag ); - this->CentralImageTabWidget->setCurrentIndex( idx ); -} - -// ***************************************************************************** -void QGoMainWindow::OpenAndDisplayLSMFile( QString iTag, int timePoint, bool ComposeChannels ) -{ - this->OpenLSMFile( iTag, timePoint, ComposeChannels ); - - //m_PageView.push_back( new QImagePageViewTracer ); - QColorImagePageView * viewer = new QColorImagePageView; - //m_PageView.last()->SetImage( m_VTKImage.last() ); - viewer->SetImage( m_VTKImage.last() ); - - int idx = this->CentralImageTabWidget->addTab( viewer, iTag ); - this->CentralImageTabWidget->setCurrentIndex( idx ); -} - -// ***************************************************************************** -void QGoMainWindow::OpenLSMFile( QString iTag, int timePoint, bool ComposeChannels ) -{ - vtkLSMReader* reader=vtkLSMReader::New(); - reader->SetFileName( iTag.toAscii( ).constData( ) ); - reader->SetUpdateTimePoint( timePoint ); - reader->Update(); - - int NumberOfChannels = reader->GetNumberOfChannels(); - - if( !ComposeChannels || NumberOfChannels < 2 ) - { - vtkImageData * result = vtkImageData::New(); - result->ShallowCopy( reader->GetOutput() ); - m_VTKImage.push_back( result ); - reader->Delete(); - return; - } - - vtkLSMReader* reader2 = vtkLSMReader::New(); - reader2->SetFileName( iTag.toAscii( ).constData( ) ); - reader2->SetUpdateTimePoint( timePoint ); - reader2->SetUpdateChannel( 1 ); - reader2->Update(); - - vtkImageAppendComponents* appendFilter1 = vtkImageAppendComponents::New(); - appendFilter1->AddInput( reader->GetOutput() ); - appendFilter1->AddInput( reader2->GetOutput() ); - appendFilter1->Update(); - - reader->Delete(); - reader2->Delete(); - - // NOTE ALEX: if channel == 2 we could do a deepcopy - // for faster process - vtkLSMReader* reader3 = vtkLSMReader::New(); - reader3->SetFileName( iTag.toAscii( ).constData( ) ); - reader3->SetUpdateTimePoint( timePoint ); - reader3->SetUpdateChannel( 2 ); - reader3->Update(); - - int * dimensions = reader3->GetDimensions(); - int flatindex = dimensions[0] * dimensions[1] * dimensions[2]; - if( NumberOfChannels == 2 ) // dummy third channel - { - // here we suppose the type to be char - // to be improved - char *ptr = (char*)( reader3->GetOutput()->GetScalarPointer()); - for( int k=0; k < flatindex; k++ ) - { - *ptr++ = 0; - } - } - - vtkImageAppendComponents* appendFilter2 = vtkImageAppendComponents::New(); - appendFilter2->AddInput( appendFilter1->GetOutput() ); - appendFilter2->AddInput( reader3->GetOutput() ); - appendFilter2->Update(); - - appendFilter1->Delete(); - reader3->Delete(); - - vtkImageData * result = vtkImageData::New(); - result->ShallowCopy( appendFilter2->GetOutput() ); - appendFilter2->Delete(); - - m_VTKImage.push_back( result ); - - return; -} - -// ***************************************************************************** -void QGoMainWindow::DisplayInTab( vtkImageData* myImage, int TabIndex ) -{ - m_PageView[ TabIndex ]->SetImage( myImage ); -} - - - -// ***************************************************************************** -void QGoMainWindow::on_actionAbout_activated( ) -{ - QString version( tr( "v0.5" ) ); - - QString about_gofigure( tr( "GoFigure V2 \n\n" ) ); - - QString authors( tr( "Authors in alphabetical order:\n" ) ); - authors.append( " * 2008 ~ Arnaud Gelas\n" ); - authors.append( " * 2007 ~ Alexandre Gouaillard\n" ); - authors.append( " * 2008 ~ Kishore Mosaliganti\n" ); - authors.append( " * 2008 ~ Lydie Souhait\n\n" ); - authors.append( " * Principal Investigator\n" ); - authors.append( " * Sean Megason\n" ); - - QString message = QString( "GoFigure V2 %1\n\n" ).arg( version ); - message.append( about_gofigure ); - message.append( authors ); - - QMessageBox::about( this, tr( "About GoFigure" ), message ); -} - -// ***************************************************************************** -void QGoMainWindow::on_actionAbout_Qt_activated( ) -{ - QMessageBox::aboutQt( this, tr( "About Qt" ) ); -} - -// ***************************************************************************** -void QGoMainWindow::Fullscreenbuttons() -{ - m_FullscreenGroup = new QActionGroup (this); - m_FullscreenGroup->addAction( this->actionFull_screen_XY ); - m_FullscreenGroup->addAction( this->actionFull_screen_YZ ); - m_FullscreenGroup->addAction( this->actionFull_screen_XZ ); - m_FullscreenGroup->addAction( this->actionFull_screen_XYZ ); - m_FullscreenGroup->addAction( this->actionQuad_View ); -} - -// ***************************************************************************** -void QGoMainWindow::setCurrentFile(const QString &fileName) -{ - m_CurrentFile = fileName; - this->setWindowModified( false ); - QString shownName = "Untitled"; - if( !m_CurrentFile.isEmpty() ) - { - shownName = strippedName( m_CurrentFile ); - m_RecentFiles.removeAll( m_CurrentFile ); - m_RecentFiles.prepend( m_CurrentFile ); - updateRecentFileActions(); - } -} - -// ***************************************************************************** -QString QGoMainWindow::strippedName(const QString &fullFileName) -{ - return QFileInfo(fullFileName).fileName(); -} - -// ***************************************************************************** -void QGoMainWindow::updateRecentFileActions() -{ - QMutableStringListIterator i(m_RecentFiles); - while (i.hasNext()) - { - if (!QFile::exists(i.next())) - i.remove(); - } - if (!m_RecentFiles.isEmpty()) - { - menuOpen_Recent_Files->setEnabled(true); - } - - for (int j = 0; j < MaxRecentFiles; ++j) - { - if (j < m_RecentFiles.count()) - { - QString text = tr("&%1 %2 ") - .arg(j + 1) - .arg(strippedName(m_RecentFiles[j])); - - recentFileActions[j]->setText(text); - recentFileActions[j]->setData(m_RecentFiles[j]); - recentFileActions[j]->setVisible(true); - menuOpen_Recent_Files->addAction(recentFileActions[j]); - } - } -} - -// ***************************************************************************** -void QGoMainWindow::openRecentFile() -{ - QAction* action = qobject_cast< QAction* >( sender() ); - if( action ) - { - SetFileName(action->data().toString()); - } -} - - -// ***************************************************************************** -void QGoMainWindow::readSettings() -{ - QSettings settings("MegasonLab", "Gofigure2"); - m_RecentFiles = settings.value("recentFiles").toStringList(); - updateRecentFileActions(); -} - -// ***************************************************************************** -void QGoMainWindow::writeSettings() -{ - QSettings settings("MegasonLab", "Gofigure2"); - settings.setValue("recentFiles", m_RecentFiles); -} - -// ***************************************************************************** -void QGoMainWindow::ShowProgressLoading( itk::Object * myFilter ) -{ - m_Bar.setValue(50); - m_Bar.show(); - m_Bar.Observe( myFilter ); - - myFilter->AddObserver( itk::EndEvent(), m_SignalAdaptor.GetCommand() ); - - QObject::connect( &m_SignalAdaptor, SIGNAL(Signal()), - &(this->m_Bar), SLOT(hide()) ); -} - -// ***************************************************************************** -void QGoMainWindow::HideProgressLoading() -{ - m_Bar.hide(); -} - -// ***************************************************************************** -void QGoMainWindow::UpdateFullScreenViewButtons(int idx) -{ - if( (idx>=0) && (idxGetFullScreenView(); -switch( whichview ) - { - default: - case 0: - { this->actionQuad_View->setChecked(true); - break; - } - case 1: - { - this->actionFull_screen_XY->setChecked(true); - break; - } - case 2: - { - this->actionFull_screen_XZ->setChecked(true); - break; - } - case 3: - { - this->actionFull_screen_YZ->setChecked(true); - break; - } - case 4: - { - this->actionFull_screen_XYZ->setChecked(true); - break; - } - } -} -} diff --git a/branches/ColorViewer/QGoMainWindow.h b/branches/ColorViewer/QGoMainWindow.h deleted file mode 100644 index cbb3c27a..00000000 --- a/branches/ColorViewer/QGoMainWindow.h +++ /dev/null @@ -1,187 +0,0 @@ -/*========================================================================= - Authors: The GoFigure Dev. Team. - at Megason Lab, Systems biology, Harvard Medical school, 2009 - - Copyright (c) 2009, President and Fellows of Harvard College. - All rights reserved. - - Redistribution and use in source and binary forms, with or without - modification, are permitted provided that the following conditions are met: - - Redistributions of source code must retain the above copyright notice, - this list of conditions and the following disclaimer. - Redistributions in binary form must reproduce the above copyright notice, - this list of conditions and the following disclaimer in the documentation - and/or other materials provided with the distribution. - Neither the name of the President and Fellows of Harvard College - nor the names of its contributors may be used to endorse or promote - products derived from this software without specific prior written - permission. - - THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS - "AS IS" AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, - THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR - PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT OWNER OR CONTRIBUTORS - BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, - OR CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT - OF SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR PROFITS; - OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, - WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE - OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF - ADVISED OF THE POSSIBILITY OF SUCH DAMAGE. - - =========================================================================*/ - -#ifndef __QGoMainWindow_h -#define __QGoMainWindow_h - -#include - -#include -#include - -// ALEX: Have to use decorator pattern here -#include -// #include "QColorImagePageView.h" -#include -#include "itkQtProgressBar.h" -#include "itkQtAdaptor.h" -#include "vtkLSMReader.h" - -#include -#include -#include -#include - -#include "QGoLUTDialog.h" -#include "ui_go.h" - - -class QGoMainWindow : public QMainWindow, - private Ui::go_mainwindow -{ - Q_OBJECT - -public: - typedef itk::Image< unsigned char, 3 > ImageType; - typedef ImageType::Pointer ImagePointer; - - typedef itk::ImageToVTKImageFilter< ImageType > VTKConvertImageType; - typedef VTKConvertImageType::Pointer VTKConvertImagePointer; - - QGoMainWindow( ); - virtual ~QGoMainWindow(); - - void SetFileName( const QString& iFileName ); - - -protected slots: - void on_actionOpen_activated( ); -// void on_actionSave_activated(); - void on_actionClose_activated( ); - void on_actionClose_all_activated( ); - void on_actionQuit_activated( ); - - void on_actionBackground_activated( ); - void on_actionLookup_Table_activated( ); - - void on_actionQuad_View_activated( ); - void on_actionFull_screen_XY_activated( ); - void on_actionFull_screen_YZ_activated( ); - void on_actionFull_screen_XZ_activated( ); - void on_actionFull_screen_XYZ_activated( ); - void on_actionVolume_rendering_XYZ_activated( ); - void on_actionScale_bars_activated( ); - - void on_actionAbout_activated( ); - void on_actionAbout_Qt_activated( ); - - void SetContourTracerOn(const bool& iChecked); - void SetContourTracerOff(const bool& iChecked); - void ShowProgressLoading( itk::Object * myFilter ); - void HideProgressLoading(); -/**\Update the full screen button group when the current tab is changed*/ - void UpdateFullScreenViewButtons(int idx); - - -// void SetTracerToPolygonTracer(); -// void SetTracerToFreeLineTracer(); -// void SetTracerToTranslateContourTracer(); -// void SetTracerToRotateContourTracer(); -// void SetTracerToScaleContourTracer(); - - void ChangeLookupTable( ); - - void SetColorForGivenId( const bool& iSelected = true ); - void ValidateContourTracer(); - void ReinitializeContourTracer(); - void openRecentFile(); - -protected: - QVector< ImagePointer > m_ITKImage; - QVector< vtkImageData* > m_VTKImage; - - /** \brief Quad View*/ - // QVector< QWidget* > m_PageView; - QVector< QImagePageViewTracer* > m_PageView; - - /** \brief Convert itk::Image format to vtkImageData */ - QVector< VTKConvertImagePointer > m_Convert; - - /** \brief Look-up Table dialog */ - QGoLUTDialog* m_LUTDialog; - - QHash< unsigned int, QColor > m_IdColorMap; - QActionGroup* m_FullscreenGroup; - - /** \brief */ - void setCurrentFile(const QString &fileName); - - /** \brief */ - void updateRecentFileActions(); - - /** \brief Open Image with given iFileName - \param[in] iFileName - */ - void OpenImage( const QString& iFileName ); - - /** \brief Display Image in a "quad-view" widget in a tab. - The title of the tab is given by iTag. - \param[in] iImage - \param[in] iTag - */ - void DisplayImage( QString iTag ); - - /** \brief Create Fullscreengroup*/ - void Fullscreenbuttons(); - - void readSettings(); - void writeSettings(); - - itk::QtSignalAdaptor m_SignalAdaptor; - - /** \brief list of recent files */ - QStringList m_RecentFiles; - - /** \brief current file name */ - QString m_CurrentFile; - - /** \brief Remove path from a given FileName*/ - QString strippedName(const QString &fullFileName); - - itk::QtProgressBar m_Bar; - //QProgressBar m_Bar; - - enum { MaxRecentFiles = 5 }; - QAction *recentFileActions[MaxRecentFiles]; - -private: - QGoMainWindow( const QGoMainWindow& ); - QGoMainWindow operator = ( const QGoMainWindow& ); - - void DisplayInTab( vtkImageData* myImage, int TabIndex ); - void OpenLSMFile( QString iTag, int timePoint, bool ComposeChannels ); - void OpenAndDisplayLSMFile( QString iTag, int timePoint, bool ComposeChannels ); - -}; -#endif diff --git a/branches/ColorViewer/go.ui b/branches/ColorViewer/go.ui deleted file mode 100644 index ffebea31..00000000 --- a/branches/ColorViewer/go.ui +++ /dev/null @@ -1,1541 +0,0 @@ - - go_mainwindow - - - Qt::NonModal - - - - 0 - 0 - 1440 - 829 - - - - GoFigure - - - true - - - - - - - QTabWidget::North - - - QTabWidget::Rounded - - - 0 - - - Qt::ElideLeft - - - - Tab 1 - - - - - Page - - - - - - - - - - 0 - 0 - 1440 - 25 - - - - - File - - - - false - - - Open Recent Files - - - - - - - - - - - - - View - - - - - - - - - - - - - - - - - Help - - - - - - - Segmentation - - - - - - - - false - - - Tracking - - - - - false - - - Lineage - - - - - Properties - - - - - - - - - - - - - - - - false - - - - - toolBar - - - TopToolBarArea - - - false - - - - - - - toolBar_2 - - - TopToolBarArea - - - false - - - - - - - - - - true - - - - 196 - 93 - - - - - 299 - 578 - - - - false - - - QDockWidget::AllDockWidgetFeatures - - - Geodesic Active Contour - - - 1 - - - - - - 0 - 0 - 211 - 381 - - - - - 50 - false - false - false - false - true - - - - Qt::LeftToRight - - - false - - - QFrame::Plain - - - 0 - - - 2 - - - - - 0 - 0 - 201 - 284 - - - - Foreground Extraction - - - - - 30 - 250 - 152 - 60 - - - - Qt::Vertical - - - QDialogButtonBox::Apply|QDialogButtonBox::RestoreDefaults - - - false - - - - - - 0 - 0 - 192 - 261 - - - - - - - - - Nuclei Stain -Threshold Min - - - - - - - 255 - - - 70 - - - - - - - - - - - Nuclei Stain -Threshold Max - - - m_NucleiTresholdSpinBox - - - - - - - 255 - - - 120 - - - - - - - - - - - Membrane Stain -Threshold - - - m_MembraneThresholdSpinBox - - - - - - - 255 - - - 255 - - - - - - - - - - - Correlation -Threshold - - - m_CorrelationThresholdSpinBox - - - - - - - 255 - - - 5 - - - - - - - - - - - Average Cell -Radius - - - m_CellRadiusSpinBox - - - - - - - 255 - - - 40 - - - - - - - - - - - Sigma Form - - - - - - - 2.000000000000000 - - - - - - - - - - - - 0 - 0 - 201 - 284 - - - - Feature Extraction - - - - - 30 - 220 - 152 - 60 - - - - Qt::Vertical - - - QDialogButtonBox::Apply|QDialogButtonBox::RestoreDefaults - - - - - - 0 - 0 - 202 - 222 - - - - - - - - - Sigma Cell -Stain - - - - - - - 0.400000000000000 - - - - - - - - - - - Sigma - Correlation Map - - - - - - - 0.400000000000000 - - - - - - - - - - - Distance Map -Weight - - - spinBox_8 - - - - - - - % - - - 100 - - - 30 - - - - - - - - - - - Gradient -Weight - - - spinBox_9 - - - - - - - % - - - - - - 100 - - - 30 - - - - - - - - - - - Gauss - Weight - - - spinBox_6 - - - - - - - % - - - 100 - - - 10 - - - - - - - - - - - - 0 - 0 - 201 - 284 - - - - Level Set Evolution - - - - - 30 - 260 - 152 - 60 - - - - Qt::Vertical - - - QDialogButtonBox::Apply|QDialogButtonBox::RestoreDefaults - - - - - - 0 - 0 - 187 - 268 - - - - - - - - - Max. Nb. -Iter. - - - spinBox_10 - - - - - - - Maximum Number Of Iterations - - - 1000 - - - 500 - - - - - - - - - - - Propagation -Weight - - - spinBox_11 - - - - - - - % - - - 100 - - - 3 - - - - - - - - - - - Curvature -Weight - - - spinBox_12 - - - - - - - % - - - 100 - - - 1 - - - - - - - - - - - Advection -Weight - - - spinBox_13 - - - - - - - % - - - 100 - - - 3 - - - - - - - - - - - Max RMS -Change - - - - - - - 4 - - - 0.001000000000000 - - - - - - - - - - - Min -Component - - - - - - - 2 - - - 2.000000000000000 - - - - - - - - - - - - - 30 - 430 - 158 - 28 - - - - Qt::Horizontal - - - QDialogButtonBox::Apply|QDialogButtonBox::Cancel - - - - - - - - 196 - 70 - - - - Manual Segmentation - - - 1 - - - - - - 20 - 0 - 49 - 56 - - - - - - - On - - - - - - - Off - - - true - - - - - - - - - 30 - 110 - 121 - 23 - - - - Save Contours - - - - - - 50 - 140 - 96 - 58 - - - - - - - Reinitialize - - - - - - - Validate - - - - - - - - - 11 - 71 - 186 - 29 - - - - - - - Id - - - IdContourBox - - - - - - - 1 - - - 10000 - - - - - - - false - - - Set Color... - - - - - - layoutWidget - TracerValidationBtn - layoutWidget - TracerReinitializeBtn - SaveContourCheckBox - OneClickSegmentationDockWidget - - - - - toolBar - - - - 22 - 22 - - - - TopToolBarArea - - - false - - - - - - - - - - - One Click - - - 1 - - - - - - 30 - 140 - 126 - 26 - - - - QDialogButtonBox::Cancel|QDialogButtonBox::Ok - - - - - - 7 - 60 - 161 - 20 - - - - Qt::Horizontal - - - - - - 10 - 10 - 108 - 48 - - - - - - - Chan Vese - - - true - - - - - - - Shape-Based - - - - - - - - - 10 - 80 - 170 - 50 - - - - - - - - - 2D - - - true - - - - - - - 3D - - - - - - - - - - - Radius - - - - - - - um - - - 0.100000000000000 - - - 6.000000000000000 - - - 0.100000000000000 - - - 3.000000000000000 - - - - - - - - - - - - false - - - false - - - - :/newPrefix/fig/document-open.png:/newPrefix/fig/document-open.png - - - Open - - - Ctrl+O - - - - - true - - - - :/newPrefix/fig/filesaveas.png:/newPrefix/fig/filesaveas.png - - - Save As... - - - Ctrl+S - - - - - - :/newPrefix/fig/system-quit.png:/newPrefix/fig/system-quit.png - - - Quit - - - Ctrl+Q - - - true - - - - - New Tab - - - - - Close - - - Ctrl+W - - - - - true - - - - :/newPrefix/fig/xy.png:/newPrefix/fig/xy.png - - - Full-screen XY - - - - - true - - - - :/newPrefix/fig/yz.png:/newPrefix/fig/yz.png - - - Full-screen YZ - - - - - true - - - - :/newPrefix/fig/zx.png:/newPrefix/fig/zx.png - - - Full-screen XZ - - - - - true - - - false - - - - :/newPrefix/fig/xyz.png:/newPrefix/fig/xyz.png - - - Full-screen (tri-planar) XYZ - - - Tri-planar XYZ - - - - - About - - - QAction::AboutRole - - - - - About Qt - - - QAction::AboutQtRole - - - - - true - - - false - - - false - - - Geodesic Active Contour Seg. - - - - - Background ... - - - - - false - - - Image ... - - - - - false - - - Mesh ... - - - - - true - - - true - - - - :/newPrefix/fig/VolumeRendering1.png:/newPrefix/fig/VolumeRendering1.png - - - Volume rendering on/off - - - Volume Rendering XYZ - - - - - Free-Line - - - - - Polygon - - - - - Translation - - - - - Rotation - - - - - Scaling - - - - - Move Node - - - - - Add Node - - - - - Remove Node - - - - - Translation - - - - - Rotation - - - - - Scaling - - - - - Move node - - - - - Add node - - - - - Delete node - - - - - Copy - - - - - Add Contour - - - - - true - - - false - - - true - - - Manual Segmentation - - - - - false - - - - :/newPrefix/fig/page-zoom.png:/newPrefix/fig/page-zoom.png - - - Zoom - - - true - - - - - true - - - - :/newPrefix/fig/LookupTable.png:/newPrefix/fig/LookupTable.png - - - Lookup Table - - - - - false - - - - :/newPrefix/fig/Hand.png:/newPrefix/fig/Hand.png - - - Pan - - - - - false - - - - :/newPrefix/fig/selection.png:/newPrefix/fig/selection.png - - - Select - - - - - Close all - - - - - true - - - true - - - - :/newPrefix/fig/4views.png:/newPrefix/fig/4views.png - - - Quad-View - - - - - true - - - false - - - - :/newPrefix/fig/scalarbar.png:/newPrefix/fig/scalarbar.png - - - Scalar bars - - - - - ??? - - - - - true - - - false - - - One Click Segmentation - - - - - m_NucleiTresholdSpinBox - m_MembraneThresholdSpinBox - m_CorrelationThresholdSpinBox - m_CellRadiusSpinBox - ForegroundExtractionbuttonBox - spinBox_6 - spinBox_8 - spinBox_9 - buttonBox_4 - spinBox_10 - spinBox_11 - spinBox_12 - spinBox_13 - buttonBox_3 - m_KishoreGlobalApplyBtn - - - - - - - actionCopy - toggled(bool) - KishoreSegDockWidget - setVisible(bool) - - - -1 - -1 - - - 107 - 325 - - - - - actionManual_Segmentation - toggled(bool) - ManualSegmentationDockWidget - setVisible(bool) - - - -1 - -1 - - - 107 - 462 - - - - - actionOne_Click_Segmentation - toggled(bool) - OneClickSegmentationDockWidget - setVisible(bool) - - - -1 - -1 - - - 97 - 672 - - - - - diff --git a/branches/ColorViewer/gofigure.cxx b/branches/ColorViewer/gofigure.cxx deleted file mode 100644 index 8ad4cde7..00000000 --- a/branches/ColorViewer/gofigure.cxx +++ /dev/null @@ -1,83 +0,0 @@ -/*========================================================================= - Authors: The GoFigure Dev. Team. - at Megason Lab, Systems biology, Harvard Medical school, 2009 - - Copyright (c) 2009, President and Fellows of Harvard College. - All rights reserved. - - Redistribution and use in source and binary forms, with or without - modification, are permitted provided that the following conditions are met: - - Redistributions of source code must retain the above copyright notice, - this list of conditions and the following disclaimer. - Redistributions in binary form must reproduce the above copyright notice, - this list of conditions and the following disclaimer in the documentation - and/or other materials provided with the distribution. - Neither the name of the President and Fellows of Harvard College - nor the names of its contributors may be used to endorse or promote - products derived from this software without specific prior written - permission. - - THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS - "AS IS" AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, - THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR - PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT OWNER OR CONTRIBUTORS - BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, - OR CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT - OF SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR PROFITS; - OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, - WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE - OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF - ADVISED OF THE POSSIBILITY OF SUCH DAMAGE. - - =========================================================================*/ - -#include -#include "QGoMainWindow.h" -#include - -int main( int argc, char** argv ) -{ - QApplication app(argc, argv); - - QPixmap pixmap(":/fig/splash.jpg"); - QSplashScreen *splash = new QSplashScreen(pixmap,Qt::WindowStaysOnTopHint); - - splash->show(); - - app.processEvents(); - splash->showMessage("Application loading...please wait"); - - QGoMainWindow form; - - if( argc == 2 ) - { - splash->showMessage("Image loading...please wait"); - form.SetFileName( argv[1] ); - } - - app.setMainWidget( &form ); - - form.show( ); - - splash->showMessage("Application ready"); - // app.processEvents(); - splash->finish(&form); - delete splash; - - return app.exec(); -} - - - - - - - - - -/*establishConnections(); -mainWin.show(); -splash->finish(&mainWin); -delete splash; -return app.exec();*/ diff --git a/branches/ColorViewer/resources/axes.qrc b/branches/ColorViewer/resources/axes.qrc deleted file mode 100644 index f568e465..00000000 --- a/branches/ColorViewer/resources/axes.qrc +++ /dev/null @@ -1,68 +0,0 @@ - - - fig/splash.jpg - - - fig/xy.png - - - fig/scalarbar.png - - - fig/4views.png - - - fig/selection.png - - - fig/filesaveas.png - - - fig/document-open.png - - - fig/Hand.png - - - fig/LookupTable.png - - - fig/folder.png - - - fig/page-zoom.png - - - fig/system-quit.png - - - fig/spline.png - - - fig/tracer.png - - - fig/scaling.png - - - fig/rotation.png - - - 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