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segNET is a suite of tools for identifying gene modules from complex genome-wide networks
Software for the Analysis of Focal Adhesion Images
Code used in the EXIT paper for sequence processing/analysis.
Quantitative Analysis of Single Invadopodia
Code from the paper: Xu K, Morgan KT, Todd A, Elston TC and Gomez SM. A whole-body model for glycogen regulation reveals a critical role for substrate cycling in maintaining blood glucose homeostasis. PLoS Computational Biology. 2011. Dec;7(12):e1002272.
Quantification of Invadopodia activity in cell populations
xCEED: Methods for the comparison of phylogenetic trees
Software for the Analysis of the Effects of CALI Before/After Experiments Around the Cell Edge