From 774ed9020ea47ed572c6ef6b304697e69b3c4c2e Mon Sep 17 00:00:00 2001
From: Cory McLean <cym@google.com>
Date: Thu, 12 May 2016 10:41:23 -0700
Subject: [PATCH] Bug fix for range representation of Variants in
 AnnotateVariants.java.

---
 .../cloud/genomics/dataflow/pipelines/AnnotateVariants.java     | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/src/main/java/com/google/cloud/genomics/dataflow/pipelines/AnnotateVariants.java b/src/main/java/com/google/cloud/genomics/dataflow/pipelines/AnnotateVariants.java
index 134c575..92a1a52 100644
--- a/src/main/java/com/google/cloud/genomics/dataflow/pipelines/AnnotateVariants.java
+++ b/src/main/java/com/google/cloud/genomics/dataflow/pipelines/AnnotateVariants.java
@@ -175,7 +175,7 @@ public void processElement(
             .addAll(variant.getAlternateBasesList())
             .add(variant.getReferenceBases())
             .build();
-        Range<Long> pos = Range.openClosed(variant.getStart(), variant.getEnd());
+        Range<Long> pos = Range.closedOpen(variant.getStart(), variant.getEnd());
         for (String allele : alleles) {
           String outKey = Joiner.on(":").join(
               variant.getReferenceName(), variant.getStart(), allele, variant.getId());