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Find Samples on GitHub

Here's a list of what you'll find on GitHub.

Interactive Data Analysis Samples and Tools

getting-started-bigquery
Example queries to show how to get started with genomic data in BigQuery.
codelabs
Codelabs demonstrating usage of several tools and systems on genomic data.
bigquery-examples
Advanced BigQuery examples on genomic data.
datalab-examples
Example `Google Cloud Datalab`_ iPython Notebooks for genomics use cases.
bioconductor-workshop-r
R package containing instructional materials for using GoogleGenomics Bioconductor and bigrquery packages.
api-client-r
An R package for Google Genomics API queries.
gatk-tools-java
Tools for using Picard and GATK with the Google Genomics API.
beacon-go
AppEngine implementation of the Beacon API from the Global Alliance for Genomics and Health written in Go.

Cluster Computing Data Analysis Samples

dataflow-java
Google Cloud Dataflow pipelines such as Identity-By-State as well as useful utility classes.
spark-examples
Apache Spark jobs such as Principal Coordinate Analysis.
grid-computing-tools
Scripts and samples for using Grid Engine on Google Cloud Platform.

Working with the Google Genomics API

getting-started-with-the-api
Examples of how to get started with the Google Genomics API in many languages.
utils-java
Common Java files for Google Genomics integrations.

Data Visualization Application Samples

api-client-javascript
A simple web application that demonstrates how javascript can be used to fetch data from the Google Genomics APIs.
api-client-android
A sample Android app that calls the Google Genomics API.
api-client-python
Google AppEngine implementation of a simple genome browser that pulls data from the Google Genomics API.
api-client-r
An R package for Google Genomics API queries.

Data Analysis Application Samples

denovo-variant-caller-java
A de novo variant caller which uses information from a mother, father and child trio with a Bayesian inference method.
linkage-disequilibrium
A suite of Java tools to calculate linkage disequilibrium between variants and load the results into BigQuery and BigTable.

Miscellaneous

gce-images
Scripts that create Google Compute Engine images and Docker containers with popular genomics software installed.