Matrix-based storage & computation on hetnets to enable a search engine for hetnets
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1.diffusion-example.ipynb
2.xarray.ipynb
3.dwwc.ipynb
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README.md

hetmech: extracting mechanisms from hetnets

Build Status

Hetmech aims to identify the relevant network connections between a set of query nodes. The method is designed to operate on hetnets (networks with multiple node or relationship types).

This project is still under development. Use with caution.

Environment

This repository uses conda to manage its environment as specified in environment.yml. Install the environment with:

conda env create --file=environment.yml

Then use conda activate hetmech and conda deactivate to activate or deactivate the environment.

For local development, run the following with the hetmech environment activated:

pip install --editable .

Acknowledgments

This work is supported through a research collaboration with Pfizer Worldwide Research and Development. This work is funded in part by the Gordon and Betty Moore Foundation’s Data-Driven Discovery Initiative through Grants GBMF4552 to Casey Greene and GBMF4560 to Blair Sullivan.