From 46a529c6b4dc1017dfc90172e5090e10086488e2 Mon Sep 17 00:00:00 2001 From: Jacob Levernier Date: Thu, 4 Jan 2018 18:37:45 -0500 Subject: [PATCH] Accuracy analysis access status for 200 DOIs (#18) --- .../facilitate_going_through_dois_manually.R | 153 ++++--- .../manual-doi-checks.tsv | 400 +++++++++--------- 2 files changed, 276 insertions(+), 277 deletions(-) diff --git a/evaluate_library_access_from_output_tsv/facilitate_going_through_dois_manually.R b/evaluate_library_access_from_output_tsv/facilitate_going_through_dois_manually.R index dbfe4d8..effc483 100644 --- a/evaluate_library_access_from_output_tsv/facilitate_going_through_dois_manually.R +++ b/evaluate_library_access_from_output_tsv/facilitate_going_through_dois_manually.R @@ -1,94 +1,93 @@ -# Settings --------------------------------------------------------------------- - -manual_tsv_location <- file.path( - 'evaluate_library_access_from_output_tsv', - 'manual-doi-checks.tsv' -) - -# Open the tsv ----------------------------------------------------------------- - -dataset_to_go_through <- readr::read_tsv( - manual_tsv_location, - na = '' -) -# View(dataset_to_go_through) - -# Facilitate going through the rows that haven't been filled in ---------------- - -while (TRUE) { - user_location_input <- readline(paste0( - 'Are you on the university campus network', - '(y for on-campus, n for off-campus)? [y/n]' - )) +facilitate_going_through_dois <- function( + manual_tsv_location = file.path( + 'evaluate_library_access_from_output_tsv', + 'manual-doi-checks.tsv' + )){ + # Open the tsv ----------------------------------------------------------------- - if ( - tolower(user_location_input) == 'y' || - tolower(user_location_input) == 'n' - ) { - if (tolower(user_location_input) == 'y') { - column_for_data_entry <- 'full_text_indicator_manual_inside_campus' - column_for_date <- 'date_of_manual_full_text_check_inside_campus' - } else { - column_for_data_entry <- 'full_text_indicator_manual_outside_campus' - column_for_date <- 'date_of_manual_full_text_check_outside_campus' - } - - break # Break out of the loop, and move on. - } else { - message('Please enter y or n. Asking again...') - } -} - -for (row_number in which( - is.na(dataset_to_go_through[, column_for_data_entry]) -)) { - doi_for_row <- dataset_to_go_through[row_number, 'doi'] - - url_to_visit <- paste0( - 'https://doi.org/', - doi_for_row + dataset_to_go_through <- readr::read_tsv( + manual_tsv_location, + na = '' ) + # View(dataset_to_go_through) - message('Opening URL "', url_to_visit, '"...') - - utils::browseURL(url_to_visit) + # Facilitate going through the rows that haven't been filled in ---------------- while (TRUE) { - user_full_text_input <- readline( - 'Do we have full-text access to this DOI? [y/n/invalid] - ("invalid" = invalid DOI)' - ) + user_location_input <- readline(paste0( + 'Are you on the university campus network', + '(y for on-campus, n for off-campus)? [y/n]' + )) if ( - tolower(user_full_text_input) == 'y' || - tolower(user_full_text_input) == 'n' || - tolower(user_full_text_input) == 'invalid' + tolower(user_location_input) == 'y' || + tolower(user_location_input) == 'n' ) { - dataset_to_go_through[ - row_number, - column_for_date - ] <- as.character(Sys.Date()) - - if (tolower(user_full_text_input) == 'y') { - dataset_to_go_through[row_number, column_for_data_entry] <- 1 - } else if (tolower(user_full_text_input) == 'n') { - dataset_to_go_through[row_number, column_for_data_entry] <- 0 + if (tolower(user_location_input) == 'y') { + column_for_data_entry <- 'full_text_indicator_manual_inside_campus' + column_for_date <- 'date_of_manual_full_text_check_inside_campus' } else { - dataset_to_go_through[row_number, column_for_data_entry] <- 'invalid' + column_for_data_entry <- 'full_text_indicator_manual_outside_campus' + column_for_date <- 'date_of_manual_full_text_check_outside_campus' } break # Break out of the loop, and move on. } else { - message('Please enter y, n, or invalid. Asking again...') + message('Please enter y or n. Asking again...') } } - # Save the changes to the tsv: - write.table( - dataset_to_go_through, - file = manual_tsv_location, - sep = '\t', - na = '', - row.names = FALSE - ) + for (row_number in which( + is.na(dataset_to_go_through[, column_for_data_entry]) + )) { + doi_for_row <- dataset_to_go_through[row_number, 'doi'] + + url_to_visit <- paste0( + 'https://doi.org/', + doi_for_row + ) + + message('Opening URL "', url_to_visit, '"...') + + utils::browseURL(url_to_visit) + + while (TRUE) { + user_full_text_input <- readline( + 'Do we have full-text access to this DOI? [y/n/invalid] + ("invalid" = invalid DOI)' + ) + + if ( + tolower(user_full_text_input) == 'y' || + tolower(user_full_text_input) == 'n' || + tolower(user_full_text_input) == 'invalid' + ) { + dataset_to_go_through[ + row_number, + column_for_date + ] <- as.character(Sys.Date()) + + if (tolower(user_full_text_input) == 'y') { + dataset_to_go_through[row_number, column_for_data_entry] <- 1 + } else if (tolower(user_full_text_input) == 'n') { + dataset_to_go_through[row_number, column_for_data_entry] <- 0 + } else { + dataset_to_go_through[row_number, column_for_data_entry] <- 'invalid' + } + + break # Break out of the loop, and move on. + } else { + message('Please enter y, n, or invalid. Asking again...') + } + } + + # Save the changes to the tsv: + readr::write_tsv( + dataset_to_go_through, + manual_tsv_location, + na = '' + ) + } } + +facilitate_going_through_dois() diff --git a/evaluate_library_access_from_output_tsv/manual-doi-checks.tsv b/evaluate_library_access_from_output_tsv/manual-doi-checks.tsv index 3e1bf94..a04ac8e 100644 --- a/evaluate_library_access_from_output_tsv/manual-doi-checks.tsv +++ b/evaluate_library_access_from_output_tsv/manual-doi-checks.tsv @@ -1,201 +1,201 @@ doi full_text_indicator_automated date_of_manual_full_text_check_inside_campus full_text_indicator_manual_inside_campus date_of_manual_full_text_check_outside_campus full_text_indicator_manual_outside_campus -10.1007/bf01441062 0 -10.20531/tfb.2016.44.1.11 0 -10.1080/00377996.1953.9957299 0 -10.1038/s41550-016-0030 0 -10.1111/j.1478-4408.1958.tb02258.x 0 -10.1111/j.1550-7408.1962.tb02648.x 0 -10.1007/978-3-658-12388-8_1 0 -10.1017/s1357729800051109 0 -10.1108/s1479-3679(2013)0000020014 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