@griffithlab

The Griffith Lab

Academic Lab of Obi and Malachi Griffith

Pinned repositories

  1. civic-client

    Web client for CIViC: Clinical Interpretations of Variants in Cancer

    JavaScript 36 26

  2. dgi-db

    Rails frontend to The Genome Institute's drug gene interaction database.

    Ruby 39 17

  3. civic-server

    Backend Server for CIViC Project

    HTML 30 27

  4. regtools

    Integrate DNA-seq and RNA-seq data to identify mutations that are associated with regulatory effects on gene expression.

    C++ 25 16

  5. GenVisR

    Genome data visualizations

    R 134 52

  • Python 17 16 Updated Jul 20, 2018
  • Integrate DNA-seq and RNA-seq data to identify mutations that are associated with regulatory effects on gene expression.

    C++ 25 16 MIT Updated Jul 19, 2018
  • A python interface for the CIViC db application

    Python MIT Updated Jul 19, 2018
  • Monorepo for user-interface projects of the Bioinformatics and Genome Analytics group at MGI

    TypeScript 3 Updated Jul 19, 2018
  • A set of tools to annotate VCF files with expression and readcount data

    Python 1 2 MIT Updated Jul 19, 2018
  • Jupyter Notebook 3 1 MIT Updated Jul 17, 2018
  • Python CLI to convert between zero and one based genomic coordinate systems

    Python 5 2 Updated Jul 17, 2018
  • Website for the precision medicine workshop

    CSS 1 1 MIT Updated Jul 14, 2018
  • Griffith lab research website

    JavaScript 2 7 MIT Updated Jul 3, 2018
  • Rails frontend to The Genome Institute's drug gene interaction database.

    Ruby 39 17 MIT Updated Jul 2, 2018
  • Genome data visualizations

    R 134 52 CC0-1.0 Updated Jun 26, 2018
  • website for the rnaseq course

    HTML 1 MIT Updated Jun 25, 2018
  • Web client for CIViC: Clinical Interpretations of Variants in Cancer

    JavaScript 36 26 MIT Updated Jun 23, 2018
  • Backend Server for CIViC Project

    HTML 30 27 MIT Updated Jun 23, 2018
  • Repo for advertising and organizing CIViC hackathon/meeting activities

    7 3 Updated Jun 15, 2018
  • The project management repo of the Griffith Lab

    Updated Jun 13, 2018
  • Repo for analysis of CRC biomarkers from stool samples

    1 2 Updated Jun 11, 2018
  • Informatics for RNA-seq: A web resource for analysis on the cloud. Educational tutorials and working pipelines for RNA-seq analysis including an introduction to: cloud computing, critical file formats, reference genomes, gene annotation, expression, differential expression, alternative splicing, data visualization, and interpretation.

    R 495 309 CC-BY-SA-4.0 Updated May 31, 2018
  • The wiki repo, with pull request enabled, for the rnaseq_tutorial

    Perl 14 12 Updated May 31, 2018
  • Python package to add gnomAD allele frequencies to MGI annotated files

    Python 1 Updated May 5, 2018
  • cwl workflow for running regtools

    Common Workflow Language 1 Updated May 2, 2018
  • extraction of CIViC variants into the clinvar submission format

    Python MIT Updated May 2, 2018
  • Tools for selecting targets for and designing panel for various assays

    Jupyter Notebook Updated Mar 28, 2018
  • Instructions for setting up to run Toil on AWS

    Updated Mar 28, 2018
  • Conda recipes for the bioconda channel.

    Shell 735 Updated Mar 14, 2018
  • Beautiful static documentation for your API

    JavaScript 1 13,734 Updated Mar 7, 2018
  • Genomic data interpretation and visualization Workshop

    CSS 4 1 MIT Updated Feb 21, 2018
  • Rails frontend to The Genome Institute's database of curated mutations (DoCM)

    Ruby 6 5 MIT Updated Feb 13, 2018
  • This tool has been superseded by https://github.com/griffithlab/pVACtools

    Python 50 46 Updated Jan 24, 2018
  • Python 8 1 GPL-3.0 Updated Jan 20, 2018