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Integrate DNA-seq and RNA-seq data to identify mutations that are associated with regulatory effects on gene expression.
A python interface for the CIViC db application
Monorepo for user-interface projects of the Bioinformatics and Genome Analytics group at MGI
A set of tools to annotate VCF files with expression and readcount data
Python CLI to convert between zero and one based genomic coordinate systems
Website for the precision medicine workshop
Griffith lab research website
Rails frontend to The Genome Institute's drug gene interaction database.
Genome data visualizations
website for the rnaseq course
Web client for CIViC: Clinical Interpretations of Variants in Cancer
Backend Server for CIViC Project
Repo for advertising and organizing CIViC hackathon/meeting activities
The project management repo of the Griffith Lab
Repo for analysis of CRC biomarkers from stool samples
Informatics for RNA-seq: A web resource for analysis on the cloud. Educational tutorials and working pipelines for RNA-seq analysis including an introduction to: cloud computing, critical file formats, reference genomes, gene annotation, expression, differential expression, alternative splicing, data visualization, and interpretation.
The wiki repo, with pull request enabled, for the rnaseq_tutorial
Python package to add gnomAD allele frequencies to MGI annotated files
cwl workflow for running regtools
extraction of CIViC variants into the clinvar submission format
Tools for selecting targets for and designing panel for various assays
Instructions for setting up to run Toil on AWS
Conda recipes for the bioconda channel.
Beautiful static documentation for your API
Genomic data interpretation and visualization Workshop
Rails frontend to The Genome Institute's database of curated mutations (DoCM)
This tool has been superseded by https://github.com/griffithlab/pVACtools