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add changes to setup files

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jneich committed May 5, 2017
1 parent 3368ec5 commit a9ed860e981bf7cf6d1376c14c20a2a39c8bd7bb
Showing with 18 additions and 1 deletion.
  1. +4 −0 environment.yml
  2. +1 −0 pvacseq/lib/__init__.py
  3. +7 −0 pvacseq/pvacseq.py
  4. +5 −1 setup.py
  5. +1 −0 tests/test_pvacseq.py
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@@ -18,3 +18,7 @@ dependencies:
- PyVCF
- requests
- PyYAML
- biopython
- simanneal
- networkx
- pandas
View
@@ -14,6 +14,7 @@
"valid_alleles",
'net_chop',
"netmhc_stab",
"vaccine_design"
]
import os
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@@ -70,6 +70,13 @@ def main():
)
config_files_parser.set_defaults(func=lib.config_files)
vaccine_design_parser = subparsers.add_parser(
"vaccine_design",
help="Generate an optimal ordering for peptides in a DNA vaccine",
add_help=False
)
vaccine_design_parser.set_defaults(func=lib.vaccine_design)
parser.add_argument(
"-v", "--version",
action="store_true",
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@@ -41,7 +41,11 @@
'PyVCF',
'requests',
'PyYAML',
'connexion'
'connexion',
'biopython',
'networkx',
'simanneal',
'pandas'
],
package_data={
'pvacseq' : data_files,
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@@ -125,6 +125,7 @@ def test_pvacseq_commands(self):
"download_example_data",
"valid_alleles",
"config_files",
"vaccine_design"
]:
result = run([
sys.executable,

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