From cb8b9bc840f6b833e40ef00e1d78ef528dc7c8c7 Mon Sep 17 00:00:00 2001 From: Susanna Kiwala Date: Tue, 17 Mar 2020 09:26:45 -0500 Subject: [PATCH] Upgrade to version 1.5.7 --- docs/conf.py | 2 +- docs/index.rst | 10 ++++------ docs/releases/1_5.rst | 12 ++++++++++++ setup.py | 2 +- 4 files changed, 18 insertions(+), 8 deletions(-) diff --git a/docs/conf.py b/docs/conf.py index a82a36178..0d3ebe672 100644 --- a/docs/conf.py +++ b/docs/conf.py @@ -69,7 +69,7 @@ # The short X.Y version. version = '1.5' # The full version, including alpha/beta/rc tags. -release = '1.5.6' +release = '1.5.7' # The language for content autogenerated by Sphinx. Refer to documentation # for a list of supported languages. diff --git a/docs/index.rst b/docs/index.rst index cfee172fd..eba1777a0 100644 --- a/docs/index.rst +++ b/docs/index.rst @@ -52,12 +52,10 @@ New in release |release| This is a hotfix release. It fixes the following issues: -- The ``pvacbind run`` command would previously error out if one of the input - sequences would contain a X stop codon. This update will remove the X amino - acid and the downstream sequence before further processing the remaining - protein sequence. -- A bug in the ``pvacfuse top_score_filter`` code would previsouly result - in an error when trying to run this command. This has now been fixed. +- The ``pvacbind run`` command would previously allow fasta input files with + duplicated headers. However, it would silently skip subsequent entries with + duplicated headers even if the fasta sequence was novel. With this release + pVACbind will now error out if a duplicate fasta header is encounterd. New in version |version| ------------------------ diff --git a/docs/releases/1_5.rst b/docs/releases/1_5.rst index de316e8a8..d3a7bf2d5 100644 --- a/docs/releases/1_5.rst +++ b/docs/releases/1_5.rst @@ -156,9 +156,21 @@ This is a hotfix release. It fixes the following issues: 1.5.6 ----- +This is a hotfix release. It fixes the following issues: + - The ``pvacbind run`` command would previously error out if one of the input sequences would contain a X stop codon. This update will remove the X amino acid and the downstream sequence before further processing the remaining protein sequence. - A bug in the ``pvacfuse top_score_filter`` code would previsouly result in an error when trying to run this command. This has now been fixed. + +1.5.7 +----- + +This is a hotfix release. It fixes the following issues: + +- The ``pvacbind run`` command would previously allow fasta input files with + duplicated headers. However, it would silently skip subsequent entries with + duplicated headers even if the fasta sequence was novel. With this release + pVACbind will now error out if a duplicate fasta header is encounterd. diff --git a/setup.py b/setup.py index feb9582fb..0271ced92 100644 --- a/setup.py +++ b/setup.py @@ -61,7 +61,7 @@ setup( name="pvactools", - version="1.5.6", + version="1.5.7", packages=[ "tools", "tools.pvacbind",