diff --git a/src/junctions/junctions_extractor.cc b/src/junctions/junctions_extractor.cc index b2cfafd..8960513 100644 --- a/src/junctions/junctions_extractor.cc +++ b/src/junctions/junctions_extractor.cc @@ -136,6 +136,7 @@ int JunctionsExtractor::usage(ostream& out) { out << "\t\t" << "-s INT\tStrandness mode \n" << "\t\t\t " << "XS, use XS tags provided by aligner; RF, first-strand; FR, second-strand. REQUIRED" << endl; out << "\t\t" << "-t STR\tTag used in bam to label strand. [XS]" << endl; + out << "\t\t" << "-b STR\tThe file containing the barcodes of interest for single cell data." << endl; out << endl; return 0; @@ -580,4 +581,4 @@ string JunctionsExtractor::get_splice_site(Junction & line) { splice_site = seq1 + "-" + seq2; } return splice_site; -} \ No newline at end of file +}