From e18b45f724b63393743f2d2312b99a34ee9fba2d Mon Sep 17 00:00:00 2001 From: Kelsy Cotto Date: Tue, 9 Apr 2019 01:16:42 -0500 Subject: [PATCH 1/3] Update index.md --- docs/index.md | 5 +---- 1 file changed, 1 insertion(+), 4 deletions(-) diff --git a/docs/index.md b/docs/index.md index 48f5d43..0b61747 100644 --- a/docs/index.md +++ b/docs/index.md @@ -1,10 +1,7 @@ # RegTools -<<<<<<< HEAD -RegTools is a set of tools that integrate DNA-seq and RNA-seq data to help interpret mutations in a regulatory and splicing context. ======= -regtools is a set of tools that integrate DNA-seq and RNA-seq data to help interpret mutations in a regulatory and splicing context. You can find the source code at our [GitHub repository](https://github.com/griffithlab/regtools) or just use our [Docker image](https://hub.docker.com/r/griffithlab/regtools/) without need for installation. ->>>>>>> 1f998a6848ebc8fabb738d75dd1bd2413ca9b6b4 +RegTools is a set of tools that integrate DNA-seq and RNA-seq data to help interpret mutations in a regulatory and splicing context. You can find the source code at our [GitHub repository](https://github.com/griffithlab/regtools) or just use our [Docker image](https://hub.docker.com/r/griffithlab/regtools/) without need for installation. ##Features From 4c076ca1fb904df59ad6d0328dd8654f84f744ec Mon Sep 17 00:00:00 2001 From: Kelsy Cotto Date: Tue, 9 Apr 2019 01:18:23 -0500 Subject: [PATCH 2/3] Update index.md --- docs/index.md | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/docs/index.md b/docs/index.md index 0b61747..e5bfa9c 100644 --- a/docs/index.md +++ b/docs/index.md @@ -36,7 +36,7 @@ For information about the individual RegTools commands, please see [the Commands ##Citation You can find a bioRxiv preprint describing our intial validation of RegTools [here](https://www.biorxiv.org/content/10.1101/436634v2) -##Data availibity +##Data availability We have recently applied RegTools to the TCGA data. As part of our commitment to open-access data sharing, we have made the output files from `junctions annotate` and `cis-splice-effects identify` available for download via AWS S3. From 24f4f68ca1cc4d7384935b40c56bd7aba42c077c Mon Sep 17 00:00:00 2001 From: Kelsy Cotto Date: Tue, 9 Apr 2019 01:36:49 -0500 Subject: [PATCH 3/3] Update index.md --- docs/index.md | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/docs/index.md b/docs/index.md index e5bfa9c..5b7c535 100644 --- a/docs/index.md +++ b/docs/index.md @@ -1,6 +1,6 @@ # RegTools -======= + RegTools is a set of tools that integrate DNA-seq and RNA-seq data to help interpret mutations in a regulatory and splicing context. You can find the source code at our [GitHub repository](https://github.com/griffithlab/regtools) or just use our [Docker image](https://hub.docker.com/r/griffithlab/regtools/) without need for installation. ##Features @@ -38,7 +38,7 @@ You can find a bioRxiv preprint describing our intial validation of RegTools [he ##Data availability We have recently applied RegTools to the TCGA data. As part of our commitment to open-access data sharing, we have -made the output files from `junctions annotate` and `cis-splice-effects identify` available for download via AWS S3. +made the output files from `junctions annotate` and `cis-splice-effects identify` available for download via AWS S3. For information on how to download this data, please refer to our datamed.org entries located here: [junctions annotate results](https://datamed.org/display-item.php?repository=0075&id=AWlw6n1M3J68XfbUFuJP&query=regtools) and [cis-splice-effects identify results](https://datamed.org/display-item.php?repository=0075&id=AWlw6n1E3J68XfbUFuJN&query=regtools) ##Support