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fix headers

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malachig committed May 4, 2017
1 parent fa6f3a7 commit fe412996ff89eb5a7708b416c37af9b8e67aa209
Showing with 9 additions and 9 deletions.
  1. +9 −9 README.md
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@@ -2,19 +2,19 @@
[![Documentation Status](https://readthedocs.org/projects/regtools/badge/?version=latest)](https://readthedocs.org/projects/regtools/?badge=latest)
[![Coverage Status](https://coveralls.io/repos/griffithlab/regtools/badge.svg?branch=master&service=github)](https://coveralls.io/github/griffithlab/regtools?branch=master)
#regtools
# regtools
Tools that integrate DNA-seq and RNA-seq data to help interpret mutations
in a regulatory and splicing context.
##Features
## Features
- Identify evidence for aberrant splicing in RNA reads near a list of variants.
- Extract exon-exon junctions from a RNAseq BAM file.
- Annotate exon-exon junctions with information from a known transcriptome.
- Annotate variants with splice-region(the definition of this region is configurable) annotations.
##Installation
## Installation
Clone and install regtools by running:
```
@@ -26,26 +26,26 @@ Clone and install regtools by running:
make
```
##Usage:
## Usage:
```
regtools --help
```
##Contribute
## Contribute
- Issue Tracker: github.com/griffithlab/regtools/issues
- Source Code: github.com/griffithlab/regtools
##Support
## Support
If you have issues using the project, please let us know.
We have a mailing list located at: regtools@googlegroups.com and the
forum is here - https://groups.google.com/forum/#!forum/regtools.
Github issues are another option to contact the project about
potential bugs.
##Documentation
## Documentation
The documentation for the project is hosted on
[Read the Docs.](https://regtools.readthedocs.org/en/latest/)
@@ -55,12 +55,12 @@ If you would like to build the documentation locally, please install
work on most machines. Then run `mkdocs serve` from within the `regtools`
base directory.
##Acknowledgements
## Acknowledgements
Regtools uses several open-source libraries. We would like to thank the
developers of htslib and bedtools. We would also like to thank Travis Abbott for
useful comments and code.
##License
## License
The project is licensed under the [MIT license](https://opensource.org/licenses/MIT).

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