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Commits on Apr 3, 2017
  1. Update variants annotate docs

    Avinash Ramu
    Avinash Ramu committed Apr 3, 2017
  2. Merge pull request #58 from griffithlab/output_DA_junctions

    gatoravi committed Apr 3, 2017
    Output DA junctions
  3. Merge branch 'master' into output_DA_junctions

    gatoravi committed Apr 3, 2017
Commits on Mar 24, 2017
  1. Merge pull request #57 from griffithlab/cis-ase-docs

    gatoravi committed Mar 24, 2017
    Update docs
  2. Bump up version

    Avinash Ramu
    Avinash Ramu committed Mar 24, 2017
  3. Output DA sites

    Avinash Ramu
    Avinash Ramu committed Mar 24, 2017
  4. Update docs

    Avinash Ramu
    Avinash Ramu committed Mar 24, 2017
Commits on Mar 17, 2017
  1. Merge pull request #55 from griffithlab/cis-ase-docs

    gatoravi committed Mar 17, 2017
    Add basic docs for cis-ase command
Commits on Mar 15, 2017
  1. Add basics of cis-ase command

    Avinash Ramu
    Avinash Ramu committed Mar 15, 2017
Commits on Mar 4, 2017
  1. Merge pull request #52 from griffithlab/junctions_output_fix

    gatoravi committed Mar 4, 2017
    Remove erroneous return
  2. Merge branch 'master' into junctions_output_fix

    gatoravi committed Mar 4, 2017
  3. Merge pull request #51 from griffithlab/version_update

    gatoravi committed Mar 4, 2017
    Fix version number
  4. Remove erroneous return

    Avinash Ramu
    Avinash Ramu committed Mar 4, 2017
Commits on Mar 3, 2017
  1. Merge branch 'master' into version_update

    gatoravi committed Mar 3, 2017
  2. Fix version number

    Avinash Ramu
    Avinash Ramu committed Mar 3, 2017
Commits on Mar 2, 2017
  1. Merge pull request #49 from griffithlab/docs_update

    gatoravi committed Mar 2, 2017
    Add -j option to docs
Commits on Mar 1, 2017
  1. Add -j option to docs

    Avinash Ramu
    Avinash Ramu committed Mar 1, 2017
Commits on Feb 22, 2017
  1. Merge pull request #43 from zlskidmore/master

    zlskidmore committed Feb 22, 2017
    doc update
Commits on Feb 20, 2017
  1. doc update

    zlskidmore committed Feb 20, 2017
Commits on Feb 10, 2017
  1. Merge pull request #39 from griffithlab/malachig-patch-1

    malachig committed Feb 10, 2017
    add link to license info
Commits on Feb 9, 2017
  1. add link to license info

    malachig committed Feb 9, 2017
Commits on Jul 1, 2016
  1. Merge pull request #38 from gatoravi/master

    gatoravi committed Jul 1, 2016
    Update ASE model
  2. Update test DNA bam

    gatoravi committed Jul 1, 2016
Commits on Jun 30, 2016
  1. Update cis-ase tests

    gatoravi committed Jun 30, 2016
Commits on Jun 27, 2016
  1. Update test data to reflect new priors

    gatoravi committed Jun 27, 2016
  2. Remove unused class member

    gatoravi committed Jun 27, 2016
Commits on Jun 20, 2016
  1. Update ASE method to use the new models

    Avinash Ramu
    Avinash Ramu committed Jun 20, 2016
  2. update to new function names in test

    Avinash Ramu
    Avinash Ramu committed Jun 20, 2016
  3. Separate out binomial models for somatic/germline

    Avinash Ramu
    Avinash Ramu committed Jun 20, 2016
  4. Use MAP estimator

    Avinash Ramu
    Avinash Ramu committed Jun 20, 2016
Commits on Jun 8, 2016
  1. Merge pull request #37 from gatoravi/format_ase_output

    gatoravi committed Jun 8, 2016
    Format ASE output
  2. Add test for binomial model

    Avinash Ramu
    Avinash Ramu committed Jun 8, 2016
  3. Add cmath before using pow

    Avinash Ramu
    Avinash Ramu committed Jun 8, 2016
Commits on Jun 7, 2016
  1. Fix typo in library name

    Avinash Ramu
    Avinash Ramu committed Jun 7, 2016
  2. Test the Beta model

    Avinash Ramu
    Avinash Ramu committed Jun 7, 2016