Permalink
Commits on Apr 22, 2018
  1. Merge branch 'master' into fix_E_v2

    yang-yangfeng committed Apr 22, 2018
  2. Merge pull request #91 from griffithlab/strand

    yang-yangfeng committed Apr 22, 2018
    Strand
  3. Merge branch 'master' into strand

    yang-yangfeng committed Apr 22, 2018
  4. Merge pull request #94 from griffithlab/fix_skip_count

    yang-yangfeng committed Apr 22, 2018
    Fix skip count, addresses #61
Commits on Apr 21, 2018
  1. bump version to 0.4.2 for skip count fix

    Yan-Yang Feng
    Yan-Yang Feng committed Apr 21, 2018
  2. bump version to 0.4.1 for E option bug fix

    Yan-Yang Feng
    Yan-Yang Feng committed Apr 21, 2018
  3. Merge branch 'master' into strand

    yang-yangfeng committed Apr 21, 2018
  4. Merge branch 'master' into fix_skip_count

    yang-yangfeng committed Apr 21, 2018
Commits on Jan 25, 2018
  1. Merge pull request #97 from zlskidmore/master

    zlskidmore committed Jan 25, 2018
    fix docker file and readme
Commits on Jan 24, 2018
  1. fix docker file and readme

    zlskidmore committed Jan 24, 2018
  2. Merge pull request #96 from zlskidmore/master

    zlskidmore committed Jan 24, 2018
    updated readme
  3. updated readme

    zlskidmore committed Jan 24, 2018
Commits on Jan 23, 2018
  1. Merge pull request #95 from zlskidmore/master

    zlskidmore committed Jan 23, 2018
    added Dockefile for automated builds
Commits on Jan 19, 2018
  1. added Dockefile

    zlskidmore committed Jan 19, 2018
Commits on Jan 7, 2018
  1. update test

    yang-yangfeng committed Jan 7, 2018
  2. update tests

    yang-yangfeng committed Jan 7, 2018
  3. sort junctions

    yang-yangfeng committed Jan 7, 2018
  4. string instead of char for strand

    yang-yangfeng committed Jan 7, 2018
  5. use if statement

    yang-yangfeng committed Jan 7, 2018
  6. strand_proxy to make sort order consistent across systems

    yang-yangfeng committed Jan 7, 2018
Commits on Jan 6, 2018
  1. update tests for stranded option

    yang-yangfeng committed Jan 6, 2018
  2. num_to_str instead of sstream

    yang-yangfeng committed Jan 6, 2018
  3. use streams instead of to_string: oops forgot some

    yang-yangfeng committed Jan 6, 2018
  4. use streams instead of to_string

    yang-yangfeng committed Jan 6, 2018
Commits on Jan 5, 2018
  1. update usage junctions extract test

    yang-yangfeng committed Jan 5, 2018
  2. don't necessarily count first or last exon/first exon's acceptor/last…

    yang-yangfeng committed Jan 5, 2018
    … exon's donor
Commits on Jan 4, 2018
Commits on Dec 10, 2017
  1. bump up to version 0.5.0 for strandness option

    yang-yangfeng committed Dec 10, 2017
  2. fix usage text

    yang-yangfeng committed Dec 10, 2017
  3. fix usage text

    yang-yangfeng committed Dec 10, 2017
  4. switch RF and FR int values; RF is now 1 and FR is now 2 to match wit…

    yang-yangfeng committed Dec 10, 2017
    …h first-strand/second-strand descriptors
Commits on Nov 15, 2017
  1. fix test

    yang-yangfeng committed Nov 15, 2017