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Commits on Feb 9, 2017
  1. add link to license info

    malachig committed Feb 9, 2017
Commits on Jul 1, 2016
  1. Merge pull request #38 from gatoravi/master

    gatoravi committed Jul 1, 2016
    Update ASE model
  2. Update test DNA bam

    gatoravi committed Jul 1, 2016
Commits on Jun 30, 2016
  1. Update cis-ase tests

    gatoravi committed Jun 30, 2016
Commits on Jun 27, 2016
  1. Update test data to reflect new priors

    gatoravi committed Jun 27, 2016
  2. Remove unused class member

    gatoravi committed Jun 27, 2016
Commits on Jun 20, 2016
  1. Update ASE method to use the new models

    Avinash Ramu
    Avinash Ramu committed Jun 20, 2016
  2. update to new function names in test

    Avinash Ramu
    Avinash Ramu committed Jun 20, 2016
  3. Separate out binomial models for somatic/germline

    Avinash Ramu
    Avinash Ramu committed Jun 20, 2016
  4. Use MAP estimator

    Avinash Ramu
    Avinash Ramu committed Jun 20, 2016
Commits on Jun 8, 2016
  1. Merge pull request #37 from gatoravi/format_ase_output

    gatoravi committed Jun 8, 2016
    Format ASE output
  2. Add test for binomial model

    Avinash Ramu
    Avinash Ramu committed Jun 8, 2016
  3. Add cmath before using pow

    Avinash Ramu
    Avinash Ramu committed Jun 8, 2016
Commits on Jun 7, 2016
  1. Fix typo in library name

    Avinash Ramu
    Avinash Ramu committed Jun 7, 2016
  2. Test the Beta model

    Avinash Ramu
    Avinash Ramu committed Jun 7, 2016
  3. Maintain precision

    Avinash Ramu
    Avinash Ramu committed Jun 7, 2016
  4. Remove prints

    Avinash Ramu
    Avinash Ramu committed Jun 7, 2016
  5. Add copy assignment constructor

    Avinash Ramu
    Avinash Ramu committed Jun 7, 2016
  6. Merge branch 'format_ase_output' of github.com:gatoravi/regtools into…

    Avinash Ramu
    Avinash Ramu committed Jun 7, 2016
    … format_ase_output
  7. Add an additional site to test bams

    gatoravi committed Jun 7, 2016
  8. Fix VCF file

    gatoravi committed Jun 7, 2016
Commits on May 23, 2016
  1. Update usage method

    Avinash Ramu
    Avinash Ramu committed May 23, 2016
Commits on May 20, 2016
  1. Add output VCF file option

    Avinash Ramu
    Avinash Ramu committed May 20, 2016
Commits on May 19, 2016
  1. Basic VCF format output

    Avinash Ramu
    Avinash Ramu committed May 19, 2016
  2. Remove unused fields

    Avinash Ramu
    Avinash Ramu committed May 19, 2016
  3. Don't print to stdout

    Avinash Ramu
    Avinash Ramu committed May 19, 2016
Commits on May 17, 2016
  1. Merge pull request #36 from gatoravi/betas_model

    gatoravi committed May 17, 2016
    Betas model
  2. Rename integration tests

    Avinash Ramu
    Avinash Ramu committed May 17, 2016
  3. Add test for -B

    Avinash Ramu
    Avinash Ramu committed May 17, 2016
  4. Add function clobbered by merge

    Avinash Ramu
    Avinash Ramu committed May 17, 2016
  5. Merge branch 'master' into betas_model

    Avinash Ramu
    Avinash Ramu committed May 17, 2016
  6. Merge pull request #34 from gatoravi/ase_exonic_only

    gatoravi committed May 17, 2016
    Look for ASE in exonic loci alone
  7. Merge remote-tracking branch 'origin/master' into ase_exonic_only

    Avinash Ramu
    Avinash Ramu committed May 17, 2016
  8. Test -E option

    Avinash Ramu
    Avinash Ramu committed May 17, 2016
  9. Update notes for -E

    Avinash Ramu
    Avinash Ramu committed May 17, 2016