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IONiseR

IONiseR provides tools for the quality assessment of Oxford Nanopore MinION data. It extracts summary statistics from a set of fast5 files and can be used either before or after base calling. In addition to standard summaries of the read-types produced, it provides a number of plots for visualising metrics relative to experiment run time or spatially over the surface of a flowcell.

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Travis BioC Test Coverage
Build Status BioC Status Codecov

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Package Homepage: http://bioconductor.org/packages/devel/bioc/html/IONiseR.html Bug Reports: https://support.bioconductor.org/p/new/post/?tag_val=IONiseR.

Funding

Funding for continued development and maintenance of this package is provided by the German Network for Bioinformatics Infrastructure

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Quality Assessment Tools for Oxford Nanopore MinION data

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