[RELEASE] 1.0.8

grosenberger · Jul 31, 2020 · cdc0105 · cdc0105
1 parent e70c4dd
commit cdc0105
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Showing 2 changed files with 8 additions and 2 deletions.
diff --git a/secat/preprocess.py b/secat/preprocess.py
@@ -65,7 +65,7 @@ def __init__(self, mitabfile):
 
     def read(self, mitabfile):
         def _extract_uniprotkb(string):
-            return [u for u in string.split("|") if "uniprotkb" in u][0].split("uniprotkb:")[1].split("-")[0]
+            return [i.split("uniprotkb:")[1].split("-")[0] for i in [u for u in string.split("|") if "uniprotkb" in u]]
 
         def _extract_score(string):
             if 'intact-miscore:' in string:
@@ -97,6 +97,12 @@ def _extract_score(string):
         df.bait_id = df.bait_id.apply(_extract_uniprotkb)
         df.prey_id = df.prey_id.apply(_extract_uniprotkb)
 
+        # Explode lists
+        df = df.explode('bait_id').reset_index(drop=True)
+        df = df.explode('prey_id').reset_index(drop=True)
+
+        click.echo("Info: MITAB file contains %s entries considering all alternative identifiers." % df.shape[0])
+
         # Extract score
         df.interaction_confidence = df.interaction_confidence.apply(_extract_score)
 

diff --git a/setup.py b/setup.py
@@ -10,7 +10,7 @@
 
 setup(
     name='secat',
-    version='1.0.7',
+    version='1.0.8',
     description='Size-Exclusion Chromatography Algorithmic Toolkit',
     long_description=long_description,
     long_description_content_type='text/markdown',