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shell_script: ./test/resources/start_ahrd_batched.sh
ahrd_call: "java -Xmx2048m -jar ./dist/ahrd.jar #batch#"
proteins_dir: ./test/resources/proteins
batch_ymls_dir: ./test/resources/batch_ymls
token_score_bit_score_weight: 0.5
token_score_database_score_weight: 0.3
token_score_overlap_score_weight: 0.2
blast_dbs:
swissprot:
dir: ./test/resources/sprot_blast_results
weight: 100
blacklist: ./test/resources/blacklist_descline.txt
filter: ./test/resources/filter_descline_sprot.txt
token_blacklist: ./test/resources/blacklist_token.txt
description_score_bit_score_weight: 0.2
tair:
dir: ./test/resources/tair_blast_results
weight: 50
blacklist: ./test/resources/blacklist_descline.txt
filter: ./test/resources/filter_descline_tair.txt
token_blacklist: ./test/resources/blacklist_token.txt
description_score_bit_score_weight: 0.4
trembl:
dir: ./test/resources/trembl_blast_results
weight: 10
blacklist: ./test/resources/blacklist_descline.txt
filter: ./test/resources/filter_descline_trembl.txt
token_blacklist: ./test/resources/blacklist_token.txt
description_score_bit_score_weight: 0.4
interpro_results_dir: ./test/resources/interpro_results
interpro_database: ./test/resources/interpro_31.xml
gene_ontology_results_dir: ./test/resources/gene_ontology_results
output_dir: ./test/resources/
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