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Added Trainer-Batcher example input files.

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asishallab committed Apr 7, 2016
1 parent 584d6e7 commit 69da60929cbb416d219e2dcc9a63f209a047b781
Showing with 29 additions and 0 deletions.
  1. +28 −0 test/resources/trainer_batcher_example.yml
  2. +1 −0 trainer_batcher_example.yml
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shell_script: ./test/resources/start_ahrd_batched.sh
ahrd_call: "java -Xmx2048m -cp ./dist/ahrd.jar ahrd.controller.Trainer #batch#"
proteins_fasta: ./test/resources/proteins.fasta
references_fasta: ./test/resources/references.fasta
interpro_database: ./test/resources/interpro_31.xml
interpro_result: ./test/resources/interpro_result.raw
gene_ontology_result: ./test/resources/go_results.csv
batch_ymls_dir: ./test/resources/trainer_batch_ymls
no_start_positions_in_parameter_space: 10
remember_simulated_annealing_path: true
find_highest_possible_evaluation_score: true
output_dir: ./test/resources/
blast_dbs:
swissprot:
file: ./test/resources/swissprot_blast8_tabular.txt
blacklist: ./test/resources/blacklist_descline.txt
filter: ./test/resources/filter_descline_sprot.txt
token_blacklist: ./test/resources/blacklist_token.txt
tair:
file: ./test/resources/tair_blast8_tabular.txt
blacklist: ./test/resources/blacklist_descline.txt
filter: ./test/resources/filter_descline_tair.txt
token_blacklist: ./test/resources/blacklist_token.txt
trembl:
file: ./test/resources/trembl_blast8_tabular.txt
blacklist: ./test/resources/blacklist_descline.txt
filter: ./test/resources/filter_descline_trembl.txt
token_blacklist: ./test/resources/blacklist_token.txt

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