@grunwaldlab

Grunwald lab

  • metacoder_documentation

    Documentation for the metacoder R package

    HTML 1 Updated Aug 30, 2018

  • poppr

    🌶 An R package for genetic analysis of populations with mixed (clonal/sexual) reproduction

    r multilocus-genotypes genetic-distances population-genetics multilocus-lineages genetic-analysis populations
    R 29 12 Updated Aug 30, 2018

  • metacoder

    Parsing, Manipulation, and Visualization of Metabarcoding/Taxonomic data

    cran r taxonomy hierarchical trees pcr metabarcoding
    R 56 13 Updated Aug 29, 2018

  • GBS-Pcinnamomi

    Forked from shankarkshakya/GBS-Pcinnamomi
    Shell 1 Updated Aug 25, 2018

  • Population_Genetics_in_R

    A primer for computational tools to analyze genetics of populations in R

    HTML 24 14 Updated Aug 9, 2018

  • analysis_of_microbiome_community_data_in_r

    This is the source code for the "Analysis of Microbiome Community Data in R" ICPP 2018 workshop. The website is available at: https://grunwaldlab.github.io/analysis_of_microbiome_community_data_in_r/

    HTML 7 3 Updated Aug 8, 2018

  • vcfR_documentation

    Forked from knausb/vcfR_documentation

    Documentation for vcfR

    HTML 4 Updated Jun 18, 2018

  • effectR

    An R package to call oomycete effectors

    R 5 2 Updated Apr 20, 2018

  • vcfR

    Forked from knausb/vcfR

    Tools to work with variant call format files

    R 1 20 Updated Apr 17, 2018

  • ropensci_fellowship_2017

    My application for the 2017 rOpenSci fellowship

    TeX 2 Updated Jan 30, 2018

  • rubi-gbs

    Genotyping by sequencing (GBS) analysis of P. rubi and P. fragaraie.

    Shell 1 Updated Oct 5, 2017

  • MexicoPopulations

    HTML Updated Aug 23, 2017

  • labtools

    An R package for lab notebook upkeep

    R 1 1 Updated May 10, 2017

  • Reproducible-science-in-R

    This site provides information on conducting reproducible science using the R language.

    HTML 8 3 Updated Nov 2, 2016

  • popgen_review_examples

    Examples for population genetics review manuscript

    HTML 1 Updated Oct 17, 2016

  • grunwaldlab.github.io

    Our home webpage for GitHub projects

    HTML 1 Updated Oct 4, 2016

  • taxa

    Forked from ropensci/taxa
    R 6 Updated Sep 16, 2016

  • poppr-poster-aps-2016

    source data for the APS 2016 poster on Tools for analysis of clonal population genetic data in R

    HTML 1 Updated Jul 25, 2016

  • quiltr

    R package for making website representations of directories

    R 6 2 Updated Jul 19, 2016

  • audpc_example

    An example analysis for calculating AUDPC using RMarkdown

    HTML 1 14 Updated Jul 14, 2016

  • pinfestans_example

    Example data of P. infestans

    R 11 Updated Jul 12, 2016

  • Microbe-ID

    Microbe-ID

    JavaScript 4 3 Updated Jun 21, 2016

  • ezec

    Easy Interface to Effective Concentration Calculations

    R Updated Jun 12, 2016

  • popprxl

    Forked from zkamvar/popprxl

    A small package that allows import of GenAlEx data directly into poppr from excel

    R 1 Updated May 25, 2016

  • scripts

    A collection of basic scripts used in bioinformatic analysis

    Updated Mar 24, 2016

  • phytophthora_id

    Webpage of Phytophthora ID of the Grunwald lab.

    JavaScript 1 Updated Dec 16, 2015

  • pop_gen_ebook

    HTML Updated Nov 19, 2015

  • coveRage

    Forked from knausb/coveRage

    Tools to explore sequencing coverage in high-throughput sequencing projects

    C++ 1 Updated Jul 8, 2015

  • supplementary-poppr-2.0

    Supplementary materials for Frontiers paper on novel R tools for population genomics

    HTML 1 1 GPL-3.0 Updated May 7, 2015

  • RNASeq_Pipelines

    Forked from Tabima/RNASeq_Pipelines

    Scripts for RNAseq class

    HTML 6 Updated Mar 12, 2015
    • 3

    People
    @grunwald grunwald Niklaus Grunwald
    @Tabima Tabima Javier F. Tabima
    @zkamvar zkamvar Zhian N. Kamvar