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AMOVA_cache/html
cp sandbox1 to Population_Genetics_in_R
Jul 18, 2017
AMOVA_files/figure-html
cp sandbox1 to Population_Genetics_in_R
Jul 18, 2017
DAPC_cache/html
cp sandbox1 to Population_Genetics_in_R
Jul 18, 2017
DAPC_files/figure-html
cp sandbox1 to Population_Genetics_in_R
Jul 18, 2017
Data_Preparation_cache/html
cp sandbox1 to Population_Genetics_in_R
Jul 18, 2017
First_Steps_cache/html
cp sandbox1 to Population_Genetics_in_R
Jul 18, 2017
First_Steps_files/figure-html
cp sandbox1 to Population_Genetics_in_R
Jul 18, 2017
GST_gbs_analysis_files/figure-html
built site with R 4.0.0
May 30, 2020
Genotypic_EvenRichDiv_cache/html
cp sandbox1 to Population_Genetics_in_R
Jul 18, 2017
Genotypic_EvenRichDiv_files/figure-html
cp sandbox1 to Population_Genetics_in_R
Jul 18, 2017
Getting_ready_to_use_R_cache/html
rm include _output.yml, make
Jul 18, 2017
Linkage_disequilibrium_cache/html
cp sandbox1 to Population_Genetics_in_R
Jul 18, 2017
Linkage_disequilibrium_files/figure-html
cp sandbox1 to Population_Genetics_in_R
Jul 18, 2017
Locus_Stats_cache/html
cp sandbox1 to Population_Genetics_in_R
Jul 18, 2017
Locus_Stats_files/figure-html
cp sandbox1 to Population_Genetics_in_R
Jul 18, 2017
Minimum_Spanning_Networks_cache/html
cp sandbox1 to Population_Genetics_in_R
Jul 18, 2017
Minimum_Spanning_Networks_files/figure-html
cp sandbox1 to Population_Genetics_in_R
Jul 18, 2017
Pop_Structure_cache/html
changed PCs to Clusters for BIC plots in Pop_Structure
May 6, 2020
Pop_Structure_files/figure-html
cp sandbox1 to Population_Genetics_in_R
Jul 18, 2017
Population_Strata_cache/html
rm include _output.yml, make
Jul 18, 2017
Population_Strata_files/figure-html
cp sandbox1 to Population_Genetics_in_R
Jul 18, 2017
analysis_of_genome_files/figure-html
built site with R 4.0.0
May 30, 2020
chromR_files/figure-html
built site with R 4.0.0
May 30, 2020
clustering_plot_files/figure-html
built site with R 4.0.0
May 30, 2020
depth_plot_files/figure-html
built site with R 4.0.0
May 30, 2020
gbs_analysisB_files/figure-html
cp sandbox1 to Population_Genetics_in_R
Jul 18, 2017
gbs_analysis_files/figure-html
built site with R 4.0.0
May 30, 2020
genetic_differentiation_files/figure-html
built site with R 4.0.0
May 30, 2020
genome_dapc_files/figure-html
built site with R 4.0.0
May 30, 2020
images
pic missing
Jun 15, 2018
libs
cp sandbox1 to Population_Genetics_in_R
Jul 18, 2017
misc
removed css file
Jan 10, 2015
missing_data_files/figure-html
built site with R 4.0.0
May 30, 2020
msn_genlight_files/figure-html
built site with R 4.0.0
May 30, 2020
old
preserve old rmd and html files in old directory.
Jan 7, 2015
omitting_data_files/figure-html
built site with R 4.0.0
May 30, 2020
qc_files/figure-html
built site with R 4.0.0
May 30, 2020
quality_control_files/figure-html
built site with R 4.0.0
May 30, 2020
reading_vcf_files/figure-html
built site with R 4.0.0
May 30, 2020
screenshots
First commit
May 21, 2014
site_libs
rebuilt site after SNP fix in DAPC
Mar 12, 2020
styles
saved modifed peerj to peerj-mod
Jul 20, 2014
tree_genlight_files/figure-html
built site with R 4.0.0
May 30, 2020
.gitignore
removed two chapters from gitignore
May 21, 2014
.nojekyll
First commit
May 21, 2014
.zenodo.json
update upload type
Oct 13, 2016
AMOVA.Rmd
cp sandbox1 to Population_Genetics_in_R
Jul 18, 2017
AMOVA.html
built site with R 4.0.0
May 30, 2020
Authors.Rmd
cp sandbox1 to Population_Genetics_in_R
Jul 18, 2017
Authors.html
built site with R 4.0.0
May 30, 2020
DAPC.Rmd
Update DAPC.Rmd
Mar 12, 2020
DAPC.html
built site with R 4.0.0
May 30, 2020
Data_Preparation.Rmd
cp sandbox1 to Population_Genetics_in_R
Jul 18, 2017
Data_Preparation.html
built site with R 4.0.0
May 30, 2020
Data_sets.Rmd
cp sandbox1 to Population_Genetics_in_R
Jul 18, 2017
Data_sets.html
built site with R 4.0.0
May 30, 2020
First_Steps.Rmd
cp sandbox1 to Population_Genetics_in_R
Jul 18, 2017
First_Steps.html
built site with R 4.0.0
May 30, 2020
Function_Glossary.Rmd
minor grammar edits
Jul 8, 2015
Function_Glossary.html
built site with R 4.0.0
May 30, 2020
GST_gbs_analysis.Rmd
worked on R 4.0.0 compatibility
May 30, 2020
GST_gbs_analysis.html
built site with R 4.0.0
May 30, 2020
Genotypic_EvenRichDiv.Rmd
cp sandbox1 to Population_Genetics_in_R
Jul 18, 2017
Genotypic_EvenRichDiv.html
built site with R 4.0.0
May 30, 2020
Getting_ready_to_use_R.Rmd
cp sandbox1 to Population_Genetics_in_R
Jul 18, 2017
Getting_ready_to_use_R.html
built site with R 4.0.0
May 30, 2020
Goss2009.csv
First commit
May 21, 2014
Introduction.Rmd
cp sandbox1 to Population_Genetics_in_R
Jul 18, 2017
Introduction.html
worked on R 4.0.0 compatibility
May 30, 2020
License.txt
Create License.txt
Apr 29, 2018
Linkage_disequilibrium.Rmd
cp sandbox1 to Population_Genetics_in_R
Jul 18, 2017
Linkage_disequilibrium.html
built site with R 4.0.0
May 30, 2020
Locus_Stats.Rmd
cp sandbox1 to Population_Genetics_in_R
Jul 18, 2017
Locus_Stats.html
built site with R 4.0.0
May 30, 2020
Makefile
cp sandbox1 to Population_Genetics_in_R
Jul 18, 2017
Minimum_Spanning_Networks.Rmd
cp sandbox1 to Population_Genetics_in_R
Jul 18, 2017
Minimum_Spanning_Networks.html
built site with R 4.0.0
May 30, 2020
Pop_Structure.Rmd
changed PCs to Clusters for BIC plots in Pop_Structure
May 6, 2020
Pop_Structure.html
built site with R 4.0.0
May 30, 2020
Population_Genetics_Primer.Rproj
First commit
May 21, 2014
Population_Strata.Rmd
cp sandbox1 to Population_Genetics_in_R
Jul 18, 2017
Population_Strata.html
built site with R 4.0.0
May 30, 2020
Preface.Rmd
R studio became RStudio
Jul 15, 2015
Preface.html
worked on R 4.0.0 compatibility
May 30, 2020
README.html
Rebuilt site (make)
Feb 15, 2019
README.md
Update README.md
Jul 20, 2017
R_tutorial.html
changes to App 3
Feb 26, 2015
Roman.pm
add Roman perl module
May 15, 2015
SampledOrchard_1-21-2014-cropped.pdf
First commit
May 21, 2014
SampledTree_1-21-2014-cropped.pdf
First commit
May 21, 2014
TOC.Rmd
fixed link in TOC and worked on rebuiling with R 4.0.0
May 29, 2020
TOC.html
worked on R 4.0.0 compatibility
May 30, 2020
_site.yml
Created clustering_plot
Feb 14, 2019
analysis_of_genome.Rmd
added examples to analysis_of_genome
Jul 23, 2018
analysis_of_genome.html
built site with R 4.0.0
May 30, 2020
apstest.R
cp sandbox1 to Population_Genetics_in_R
Jul 18, 2017
background_functions.Rmd
rebuilt site
Jul 3, 2018
background_functions.html
built site with R 4.0.0
May 30, 2020
bibtexlib.bib
managed Tabima 2018 ref in gbs_analysis
Jun 15, 2018
bibtexlib_old1.bib
cp sandbox1 to Population_Genetics_in_R
Jul 18, 2017
censoring_data.Rmd
cp sandbox1 to Population_Genetics_in_R
Jul 18, 2017
censoring_data.html
built site with R 4.0.0
May 30, 2020
change_file_names.pl
Added change_file_names.pl
Jul 17, 2014
chromR.Rmd
cp sandbox1 to Population_Genetics_in_R
Jul 18, 2017
chromR.html
built site with R 4.0.0
May 30, 2020
clustering_plot.Rmd
updated label for DAPC plot
Mar 25, 2019
clustering_plot.html
built site with R 4.0.0
May 30, 2020
collect_functions.R
created collect_functions.R
Jul 21, 2017
data_gbs.Rmd
managed Tabima 2018 ref in gbs_analysis
Jun 15, 2018
data_gbs.html
built site with R 4.0.0
May 30, 2020
data_genome.Rmd
cp sandbox1 to Population_Genetics_in_R
Jul 18, 2017
data_genome.html
built site with R 4.0.0
May 30, 2020
depth_plot.Rmd
cp sandbox1 to Population_Genetics_in_R
Jul 18, 2017
depth_plot.html
built site with R 4.0.0
May 30, 2020
find_conflicts
modified find_conflicts
Jul 15, 2014
funpendix.Rmd
cp sandbox1 to Population_Genetics_in_R
Jul 18, 2017
funpendix.html
worked on R 4.0.0 compatibility
May 30, 2020
gbs_analysis.Rmd
worked on R 4.0.0 compatibility
May 30, 2020
gbs_analysis.html
built site with R 4.0.0
May 30, 2020
gbs_pairwise_differentiation.Rmd
cp sandbox1 to Population_Genetics_in_R
Jul 18, 2017
gbs_pairwise_differentiation.html
built site with R 4.0.0
May 30, 2020
genetic_diff.R
cp sandbox1 to Population_Genetics_in_R
Jul 18, 2017
genetic_differentiation.Rmd
added examples to analysis_of_genome
Jul 23, 2018
genetic_differentiation.html
built site with R 4.0.0
May 30, 2020
genlight_dist.Rmd
added exercises to gbs_analysis
Jul 9, 2018
genlight_dist.html
built site with R 4.0.0
May 30, 2020
genome_dapc.Rmd
cp sandbox1 to Population_Genetics_in_R
Jul 18, 2017
genome_dapc.html
built site with R 4.0.0
May 30, 2020
googlecode.html
updated googlecode.html
Sep 27, 2017
index.Rmd
cp sandbox1 to Population_Genetics_in_R
Jul 18, 2017
index.html
worked on R 4.0.0 compatibility
May 30, 2020
intro_to_R.Rmd
cp sandbox1 to Population_Genetics_in_R
Jul 18, 2017
intro_to_R.html
built site with R 4.0.0
May 30, 2020
intro_vcf.Rmd
rebuilt site
Jul 23, 2018
intro_vcf.html
worked on R 4.0.0 compatibility
May 30, 2020
make_appendix.py
add vegan to make_appendix.py
Jul 19, 2015
missing_data.Rmd
rebuilt site
Jul 20, 2017
missing_data.html
built site with R 4.0.0
May 30, 2020
monpop.csv
First commit
May 21, 2014
msn_genlight.Rmd
cp sandbox1 to Population_Genetics_in_R
Jul 18, 2017
msn_genlight.html
built site with R 4.0.0
May 30, 2020
omitting_data.Rmd
cp sandbox1 to Population_Genetics_in_R
Jul 18, 2017
omitting_data.html
built site with R 4.0.0
May 30, 2020
pinfsc50_filtered.vcf.gz
cp sandbox1 to Population_Genetics_in_R
Jul 18, 2017
population_data.gbs.txt
cp sandbox1 to Population_Genetics_in_R
Jul 18, 2017
prubi_gbs.vcf.gz
cp sandbox1 to Population_Genetics_in_R
Jul 18, 2017
qc.Rmd
rebuilt site
Jul 20, 2017
qc.html
built site with R 4.0.0
May 30, 2020
quality_control.Rmd
corrected typos
Nov 9, 2018
quality_control.html
built site with R 4.0.0
May 30, 2020
reading_vcf.Rmd
rebuilt site
Jul 23, 2018
reading_vcf.html
built site with R 4.0.0
May 30, 2020
scenarios.txt
Many changes
May 30, 2014
style.R
started exercises for reading_vcf
Jul 9, 2018
styles.css
cp sandbox1 to Population_Genetics_in_R
Jul 18, 2017
test.R
Added R tutorial and changed a few things in chapter 2
Aug 16, 2014
toc.txt
update functions_used and changed table of contents
Jul 15, 2015
tree_genlight.Rmd
cp sandbox1 to Population_Genetics_in_R
Jul 18, 2017
tree_genlight.html
built site with R 4.0.0
May 30, 2020
update_title.sh
modify toc script
Jan 9, 2015
update_toc.pl
add Roman perl module
May 15, 2015
vcf2genlight.Rmd
cp sandbox1 to Population_Genetics_in_R
Jul 18, 2017
vcf2genlight.html
built site with R 4.0.0
May 30, 2020
workshop.Rmd
Merge pull request #37 from grunwaldlab/bjk
Aug 9, 2018
workshop.html
built site with R 4.0.0
May 30, 2020