Error using use_total in zero_low_counts command

[jarrodscott]

Hi @zachary-foster !

I am encountering an error when using use_total in zero_low_counts. I get this error using my data as well the hmp data

here is the code (from your tutorial)

print(hmp_otus)
print(hmp_samples)
obj2 <- parse_tax_data(hmp_otus, class_cols = "lineage", class_sep = ";", class_key = c(tax_rank = "info", tax_name = "taxon_name"), class_regex = "^(.+)__(.+)$")
print(obj2)
obj2$data$tax_data <- zero_low_counts(obj2, "tax_data", use_total = TRUE, min_count = 5)

and I get the following error:

Error in if (all(!is_greater_than_max)) { : missing value where TRUE/FALSE needed

The error persist no matter what value I use for min_counts when use_total = TRUE. If I use the default setting use_total = FALSE I can process the dataset completely following the tutorial.

Using:
R version 3.3.3 (2017-03-06) -- "Another Canoe"
metacoder verison 0.2.0.9011
OSX 10.10.5

[zachary-foster]

Thanks for the report!

I think I have it fixed. Try to install the dev version and see if it goes away:

devtools::install_github("ropensci/taxa")
devtools::install_github("grunwaldlab/metacoder")

[jarrodscott]

Thanks! I will try later this evening when in computer and let you know :)

…

On Friday, March 23, 2018, Zachary Foster ***@***.***> wrote: Thanks for the report! I think I have it fixed. Try to install the dev version and see if it goes away: devtools::install_github("ropensci/taxa") devtools::install_github("grunwaldlab/metacoder") — You are receiving this because you authored the thread. Reply to this email directly, view it on GitHub <#227 (comment)>, or mute the thread <https://github.com/notifications/unsubscribe-auth/APcStk93qInfRQAVC5Em04-VIvdDHcjQks5thSL-gaJpZM4S4rFn> .

[jarrodscott]

that works! Thanks @zachary-foster

[zachary-foster]

Cool thanks!