From 5ffafebc8181e1ad2d63f96db2b7f21719edd009 Mon Sep 17 00:00:00 2001 From: Ruben Romero Montes Date: Tue, 24 Oct 2023 17:08:48 +0200 Subject: [PATCH] fix: spdx relationships Signed-off-by: Ruben Romero Montes --- .../backend/ExhortIntegration.java | 14 +- .../integration/backend/sbom/SbomParser.java | 9 +- .../backend/sbom/spdx/SpdxParser.java | 127 +- .../backend/sbom/spdx/SpdxWrapper.java | 60 +- .../backend/sbom/SbomParserTest.java | 53 +- src/test/resources/spdx/reverse-sbom.json | 8734 +++++++++++++++++ 6 files changed, 8895 insertions(+), 102 deletions(-) create mode 100644 src/test/resources/spdx/reverse-sbom.json diff --git a/src/main/java/com/redhat/exhort/integration/backend/ExhortIntegration.java b/src/main/java/com/redhat/exhort/integration/backend/ExhortIntegration.java index baddd060..adf68c40 100644 --- a/src/main/java/com/redhat/exhort/integration/backend/ExhortIntegration.java +++ b/src/main/java/com/redhat/exhort/integration/backend/ExhortIntegration.java @@ -26,6 +26,7 @@ import java.util.Arrays; import org.apache.camel.Exchange; +import org.apache.camel.LoggingLevel; import org.apache.camel.Message; import org.apache.camel.builder.AggregationStrategies; import org.apache.camel.builder.endpoint.EndpointRouteBuilder; @@ -51,6 +52,7 @@ import jakarta.ws.rs.ClientErrorException; import jakarta.ws.rs.core.MediaType; import jakarta.ws.rs.core.Response; +import jakarta.ws.rs.core.Response.Status; @ApplicationScoped public class ExhortIntegration extends EndpointRouteBuilder { @@ -78,7 +80,7 @@ public void configure() { restConfiguration().contextPath("/api/") .clientRequestValidation(true); - errorHandler(deadLetterChannel("seda:processFailedRequests")); + errorHandler(deadLetterChannel("direct:processInternalError")); onException(IllegalArgumentException.class) .routeId("onExhortIllegalArgumentException") @@ -174,7 +176,17 @@ public void configure() { .process(analytics::trackAnalysis); from(seda("processFailedRequests")) + .routeId("processFailedRequests") .process(monitoringProcessor::processServerError); + + from(direct("processInternalError")) + .routeId("processInternalError") + .log(LoggingLevel.ERROR, "${exception.stacktrace}") + .to(seda("processFailedRequests")) + .setBody().simple("${exception.message}") + .setHeader(Exchange.HTTP_RESPONSE_CODE, constant(Status.INTERNAL_SERVER_ERROR.getStatusCode())) + .setHeader(Exchange.CONTENT_TYPE, constant(MediaType.TEXT_PLAIN)) + ; //fmt:on } diff --git a/src/main/java/com/redhat/exhort/integration/backend/sbom/SbomParser.java b/src/main/java/com/redhat/exhort/integration/backend/sbom/SbomParser.java index 5e35f97c..56ed5c15 100644 --- a/src/main/java/com/redhat/exhort/integration/backend/sbom/SbomParser.java +++ b/src/main/java/com/redhat/exhort/integration/backend/sbom/SbomParser.java @@ -46,14 +46,15 @@ protected void validate(DependencyTree tree) { types.add(d.ref().purl().getType()); d.transitive().forEach(t -> types.add(t.purl().getType())); }); - if (types.size() > 1) { - throw new IllegalArgumentException( - "It is not supported to submit mixed Package Manager types. Found: " + types); - } + List invalidTypes = types.stream().filter(Predicate.not(Constants.PKG_MANAGERS::contains)).toList(); if (!invalidTypes.isEmpty()) { throw new IllegalArgumentException("Unsupported package types received: " + invalidTypes); } + if (types.size() > 1) { + throw new IllegalArgumentException( + "It is not supported to submit mixed Package Manager types. Found: " + types); + } } } diff --git a/src/main/java/com/redhat/exhort/integration/backend/sbom/spdx/SpdxParser.java b/src/main/java/com/redhat/exhort/integration/backend/sbom/spdx/SpdxParser.java index 89e0d23b..b57eadec 100644 --- a/src/main/java/com/redhat/exhort/integration/backend/sbom/spdx/SpdxParser.java +++ b/src/main/java/com/redhat/exhort/integration/backend/sbom/spdx/SpdxParser.java @@ -25,9 +25,7 @@ import java.util.HashMap; import java.util.HashSet; import java.util.Map; -import java.util.Optional; import java.util.Set; -import java.util.function.Predicate; import java.util.stream.Collectors; import org.slf4j.Logger; @@ -35,12 +33,11 @@ import org.spdx.jacksonstore.MultiFormatStore; import org.spdx.jacksonstore.MultiFormatStore.Format; import org.spdx.library.InvalidSPDXAnalysisException; -import org.spdx.library.model.Relationship; import org.spdx.library.model.SpdxPackage; +import org.spdx.library.model.enumerations.RelationshipType; import org.spdx.storage.simple.InMemSpdxStore; import com.redhat.exhort.api.PackageRef; -import com.redhat.exhort.integration.Constants; import com.redhat.exhort.integration.backend.sbom.SbomParser; import com.redhat.exhort.model.DependencyTree; import com.redhat.exhort.model.DirectDependency; @@ -57,16 +54,7 @@ protected DependencyTree buildTree(InputStream input) { try { MultiFormatStore inputStore = new MultiFormatStore(new InMemSpdxStore(), Format.JSON_PRETTY); SpdxWrapper wrapper = new SpdxWrapper(inputStore, input); - PackageRef root = wrapper.getRootRef(); Map deps = buildDeps(wrapper); - if (root == null) { - Optional first = deps.keySet().stream().findFirst(); - if (first.isEmpty()) { - root = DependencyTree.getDefaultRoot(Constants.MAVEN_PKG_MANAGER); - } else { - root = DependencyTree.getDefaultRoot(first.get().purl().getType()); - } - } DependencyTree tree = new DependencyTree(deps); return tree; } catch (SpdxProcessingException | InvalidSPDXAnalysisException | IOException e) { @@ -80,21 +68,8 @@ protected DependencyTree buildTree(InputStream input) { private Map buildDeps(SpdxWrapper wrapper) { Collection packages = wrapper.getPackages(); Map> links = new HashMap<>(); - packages.stream() - .filter(Predicate.not(wrapper::hasRootName)) - .forEach( - p -> { - try { - String id = p.getId(); - Set rels = - p.getRelationships().stream() - .map(this::getRelationshipId) - .collect(Collectors.toSet()); - links.put(id, rels); - } catch (InvalidSPDXAnalysisException e) { - throw new SpdxProcessingException("Unable to retrieve relationsips", e); - } - }); + packages.stream().forEach(p -> createPackageLinks(p, packages, links)); + Set directDeps = links.keySet().stream() .filter( @@ -131,6 +106,94 @@ private Map buildDeps(SpdxWrapper wrapper) { return deps; } + private void createPackageLinks( + SpdxPackage p, Collection packages, Map> links) { + try { + String pkgId = p.getId(); + if (packages.stream().noneMatch(pkg -> pkg.getId().equals(pkgId))) { + return; + } + if (p.getRelationships() == null || p.getRelationships().isEmpty()) { + addLink(links, pkgId, null); + } + p.getRelationships().stream() + .forEach( + rel -> { + try { + String relatedId; + if (rel.getRelatedSpdxElement().isPresent()) { + relatedId = rel.getRelatedSpdxElement().get().getId(); + } else { + relatedId = null; + } + boolean shouldIndexRelated = + packages.stream().anyMatch(pkg -> pkg.getId().equals(relatedId)); + + switch (RelationshipDirection.fromRelationshipType(rel.getRelationshipType())) { + case FORWARD: + if (shouldIndexRelated) { + addLink(links, pkgId, relatedId); + } else { + addLink(links, pkgId, null); + } + break; + case BACKWARDS: + if (shouldIndexRelated) { + addLink(links, relatedId, pkgId); + } + break; + case IGNORED: + } + } catch (InvalidSPDXAnalysisException e) { + throw new SpdxProcessingException( + "Unable to determine relationship for " + p.getId(), e); + } + }); + } catch (InvalidSPDXAnalysisException e) { + throw new SpdxProcessingException("Unable to build package relationships", e); + } + } + + private enum RelationshipDirection { + FORWARD, + BACKWARDS, + IGNORED; + + static RelationshipDirection fromRelationshipType(RelationshipType type) { + switch (type) { + case DEPENDS_ON: + case CONTAINS: + case BUILD_DEPENDENCY_OF: + case OPTIONAL_COMPONENT_OF: + case OPTIONAL_DEPENDENCY_OF: + case PROVIDED_DEPENDENCY_OF: + case TEST_DEPENDENCY_OF: + case RUNTIME_DEPENDENCY_OF: + case DEV_DEPENDENCY_OF: + case ANCESTOR_OF: + return FORWARD; + case DEPENDENCY_OF: + case DESCENDANT_OF: + case PACKAGE_OF: + case CONTAINED_BY: + return BACKWARDS; + default: + return IGNORED; + } + } + } + + private void addLink(Map> links, String fromId, String toId) { + Set toRefs = links.get(fromId); + if (toRefs == null) { + toRefs = new HashSet<>(); + links.put(fromId, toRefs); + } + if (toId != null) { + toRefs.add(toId); + } + } + private Set addAllTransitive(String depKey, Map> links) { Set deps = links.get(depKey); if (deps == null) { @@ -144,12 +207,4 @@ private Set addAllTransitive(String depKey, Map> lin }); return result; } - - private String getRelationshipId(Relationship r) { - try { - return r.getRelatedSpdxElement().get().getId(); - } catch (InvalidSPDXAnalysisException e) { - throw new SpdxProcessingException("Unable to retrieve related Spdx element", e); - } - } } diff --git a/src/main/java/com/redhat/exhort/integration/backend/sbom/spdx/SpdxWrapper.java b/src/main/java/com/redhat/exhort/integration/backend/sbom/spdx/SpdxWrapper.java index e68f6ae1..46bc474b 100644 --- a/src/main/java/com/redhat/exhort/integration/backend/sbom/spdx/SpdxWrapper.java +++ b/src/main/java/com/redhat/exhort/integration/backend/sbom/spdx/SpdxWrapper.java @@ -44,7 +44,6 @@ public class SpdxWrapper { private MultiFormatStore inputStore; private SpdxDocument doc; private String uri; - private SpdxPackage root; private Collection packages; public SpdxWrapper(MultiFormatStore inputStore, InputStream input) @@ -58,29 +57,6 @@ public SpdxWrapper(MultiFormatStore inputStore, InputStream input) throw new SpdxProcessingException("Invalid " + SUPPORTED_VERSION + " document received"); } this.packages = parsePackages(); - this.root = findRoot(); - } - - public PackageRef getRootRef() { - if (root != null) { - return toPackageRef(root); - } - return null; - } - - private SpdxPackage findRoot() throws InvalidSPDXAnalysisException { - if (doc.getName().isEmpty()) { - return null; - } - return packages.stream().filter(p -> hasRootName(p)).findFirst().orElse(null); - } - - public boolean hasRootName(SpdxPackage p) { - try { - return p.getName().isPresent() && p.getName().get().equals(doc.getName().get()); - } catch (InvalidSPDXAnalysisException e) { - throw new SpdxProcessingException("Unable to retrieve name for package", e); - } } public PackageRef toPackageRef(SpdxPackage spdxPackage) { @@ -107,6 +83,25 @@ public PackageRef toPackageRef(SpdxPackage spdxPackage) { } } + public boolean hasPurl(SpdxPackage pkg) { + try { + if (pkg.getExternalRefs() == null || pkg.getExternalRefs().isEmpty()) { + return false; + } + return pkg.getExternalRefs().stream() + .anyMatch( + ref -> { + try { + return PURL_REFERENCE.equals(ref.getReferenceType().getIndividualURI()); + } catch (InvalidSPDXAnalysisException e) { + return false; + } + }); + } catch (InvalidSPDXAnalysisException e) { + return false; + } + } + public Collection getPackages() { return this.packages; } @@ -120,11 +115,26 @@ public SpdxPackage getPackageById(String id) { } private Collection parsePackages() throws InvalidSPDXAnalysisException { + Optional docName = doc.getName(); return inputStore .getAllItems(uri, SpdxConstants.CLASS_SPDX_PACKAGE) - .filter(p -> root == null || !p.getId().equals(root.getId())) .map(TypedValue::getId) .map(this::getPackageById) + .filter(this::hasPurl) + .filter(p -> !packageHasName(p, docName)) .collect(Collectors.toList()); } + + private boolean packageHasName(SpdxPackage pkg, Optional expected) { + Optional name; + try { + name = pkg.getName(); + if (name.isPresent()) { + return name.get().equals(expected.orElse(null)); + } + return expected.isEmpty(); + } catch (InvalidSPDXAnalysisException e) { + throw new SpdxProcessingException("Unable to retrieve package name", e); + } + } } diff --git a/src/test/java/com/redhat/exhort/integration/backend/sbom/SbomParserTest.java b/src/test/java/com/redhat/exhort/integration/backend/sbom/SbomParserTest.java index e702b032..e443c997 100644 --- a/src/test/java/com/redhat/exhort/integration/backend/sbom/SbomParserTest.java +++ b/src/test/java/com/redhat/exhort/integration/backend/sbom/SbomParserTest.java @@ -36,7 +36,6 @@ import org.junit.jupiter.params.provider.Arguments; import org.junit.jupiter.params.provider.MethodSource; -import com.redhat.exhort.api.PackageRef; import com.redhat.exhort.integration.Constants; import com.redhat.exhort.integration.backend.sbom.cyclonedx.CycloneDxParser; import com.redhat.exhort.integration.backend.sbom.spdx.SpdxParser; @@ -50,15 +49,6 @@ public class SbomParserTest { private static final Collection MEDIA_TYPES = List.of(Constants.SPDX_MEDIATYPE_JSON, CycloneDxMediaType.APPLICATION_CYCLONEDX_JSON); - private static final PackageRef DEFAULT_MAVEN_ROOT = - DependencyTree.getDefaultRoot(Constants.MAVEN_PKG_MANAGER); - private static final PackageRef EXPECTED_ROOT = - PackageRef.builder() - .namespace("org.acme.dbaas") - .name("postgresql-orm-quarkus") - .version("1.0.0-SNAPSHOT") - .pkgManager(Constants.MAVEN_PKG_MANAGER) - .build(); @Test void testInvalidContentType() { @@ -132,7 +122,7 @@ void testMinimalSbom(String mediaType) { @ParameterizedTest @MethodSource("getSbomUseCases") - void testSbom(String mediaType, String pkgManager, int direct, int transitive, PackageRef root) { + void testSbom(String mediaType, String pkgManager, int direct, int transitive) { SbomParser parser = SbomParserFactory.newInstance(mediaType); String fileName = String.format("%s/%s-sbom.json", getFolder(mediaType), pkgManager); InputStream file = getClass().getClassLoader().getResourceAsStream(fileName); @@ -142,6 +132,18 @@ void testSbom(String mediaType, String pkgManager, int direct, int transitive, P assertEquals(transitive, tree.transitiveCount()); } + @Test + void testSpdxReverseRelationships() { + String mediaType = Constants.SPDX_MEDIATYPE_JSON; + SbomParser parser = SbomParserFactory.newInstance(mediaType); + String fileName = "spdx/reverse-sbom.json"; + InputStream file = getClass().getClassLoader().getResourceAsStream(fileName); + + DependencyTree tree = parser.buildTree(file); + assertEquals(4, tree.dependencies().size()); + assertEquals(120, tree.transitiveCount()); + } + static Stream getMediaTypes() { return MEDIA_TYPES.stream(); } @@ -150,31 +152,10 @@ static Stream getSbomUseCases() { return getMediaTypes() .mapMulti( (t, consumer) -> { - consumer.accept(arguments(t, Constants.MAVEN_PKG_MANAGER, 2, 7, EXPECTED_ROOT)); - consumer.accept( - arguments( - t, - Constants.GOLANG_PKG_MANAGER, - 2, - 3, - PackageRef.builder() - .namespace("github.com/fabric8-analytics") - .name("cli-tools") - .version("v0.2.6-0.20211007133944-2af417bfb988") - .pkgManager(Constants.NPM_PKG_MANAGER) - .build())); - consumer.accept( - arguments( - t, - Constants.NPM_PKG_MANAGER, - 2, - 3, - PackageRef.builder() - .name("fabric8-analytics-lsp-server") - .version("0.0.0-development") - .pkgManager(Constants.NPM_PKG_MANAGER) - .build())); - consumer.accept(arguments(t, Constants.PYPI_PKG_MANAGER, 2, 1, DEFAULT_MAVEN_ROOT)); + consumer.accept(arguments(t, Constants.MAVEN_PKG_MANAGER, 2, 7)); + consumer.accept(arguments(t, Constants.GOLANG_PKG_MANAGER, 2, 3)); + consumer.accept(arguments(t, Constants.NPM_PKG_MANAGER, 2, 3)); + consumer.accept(arguments(t, Constants.PYPI_PKG_MANAGER, 2, 1)); }); } diff --git a/src/test/resources/spdx/reverse-sbom.json b/src/test/resources/spdx/reverse-sbom.json new file mode 100644 index 00000000..c3689be9 --- /dev/null +++ b/src/test/resources/spdx/reverse-sbom.json @@ -0,0 +1,8734 @@ +{ + "SPDXID": "SPDXRef-DOCUMENT", + "creationInfo": { + "created": "2023-09-05T21:09:00Z", + "creators": [ + "Organization: Red Hat Product Security (secalert@redhat.com)" + ], + "licenseListVersion": "3.8" + }, + "dataLicense": "CC0-1.0", + "documentDescribes": [ + "SPDXRef-70d605cc-7998-4cd9-91a3-843a9454a2d0" + ], + "documentNamespace": "https://access.redhat.com/security/data/sbom/beta/spdx/kmm-1-70d605cc-7998-4cd9-91a3-843a9454a2d0", + "name": "kmm-1", + "packages": [ + { + "SPDXID": "SPDXRef-f26facb3-c980-4c86-b688-10eb5f10beee", + "copyrightText": "NOASSERTION", + "downloadLocation": "registry.redhat.io/kernel-module-management/kernel-module-management-hub-operator-rhel8:1.0.0-13", + "externalRefs": [ + { + "referenceCategory": "PACKAGE_MANAGER", + "referenceLocator": 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