Guillaume Filion gui11aume

Guillaume Filion
Guillaume Filion
  • Guillaume Filion 5bd180c
    Polished the pipeline, add verbose information.
Guillaume Filion
  • Guillaume Filion 371b38e
    Corrected an important bug.
gui11aume commented on issue ezorita/seeq#6
Guillaume Filion

Here is a mini case to reproduce the bug (with -b -d3). CGTATTGCGTGTGAGAAGGGCATGTTACAAATAAAGCAATAGCATCAGTA ACCTCGTAAAAGCTATAGACTTGCATGTTACAAATAAAGC…

Guillaume Filion
  • Guillaume Filion d4f63bd
    Updated rebuttal and submitted (final) manuscript.
Guillaume Filion
Guillaume Filion
  • Guillaume Filion ed3dc5d
    Added example to prove that slidesort is not all-pairs search.
Guillaume Filion
Guillaume Filion
Guillaume Filion
  • Guillaume Filion 87b1748
    Updated README and README.md to match actual options.
Guillaume Filion
  • Guillaume Filion eb1ad37
    Changed the name of private headers EVERYWHERE.
Guillaume Filion
Guillaume Filion
  • Guillaume Filion 687a397
    Added 2 pdf articles and update year.
Guillaume Filion
  • Guillaume Filion d7bf4bf
    Fixed the row-wise vs column-wise issue at the R interface.
Guillaume Filion
  • Guillaume Filion 70dcb4a
    Fixed a mistake in 'bw_zinm()'. Still some FIXME in Rjahmm.
Guillaume Filion
  • Guillaume Filion b208a94
    Fixed memory leaks. Put back 'wig2jahmm()' in Rjahmm.
Guillaume Filion
  • Guillaume Filion ec4d342
    'jahmm_R_call()' now returns full jahmm_t struct.
Guillaume Filion
  • Guillaume Filion 8ffba7e
    Prototype jahmm with separate main and Rjahmm.
Guillaume Filion
  • Guillaume Filion d7c1db1
    Rewrote 'read_file()' without 'strtok()' nor 'strtok_r()'.
Guillaume Filion
  • Guillaume Filion 776136d
    Replaced 'strtok()' by the reentrant 'strtok_r()'.
Guillaume Filion
  • Guillaume Filion 7a56072
    Some more debug info for travis.
Guillaume Filion
  • Guillaume Filion abbdc41
    Added debug info in 'read_file()' for testing on travis.
Guillaume Filion
  • Guillaume Filion dc175d2
    Put the right stuff in .travis.yml (hopefully).
Guillaume Filion
  • Guillaume Filion d65c608
    Put .travis.yml in the right location (hopefully).
Guillaume Filion
  • Guillaume Filion 2bd755f
    Simplified the internals from ZINM to ZINB.
Guillaume Filion
  • Guillaume Filion 8a02c60
    First running version with ZINM model.
Guillaume Filion
  • Guillaume Filion 34da5d9
    Changing model for ZINM (in process).
Guillaume Filion
Guillaume Filion
  • Guillaume Filion 3a17288
    Added functions to estimate zinm (testing).
Guillaume Filion
  • Guillaume Filion ab0fd95
    Set default to verbose. Now use 'quiet' instead.