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A couple of tools I find indispensable for post orthomcl down-stream analysis.
A time-saving tool to change the 'defline' of FASTA files for a range of phylogenetic programs e.g. ClustalX, MrBayes, PhyML
⚪️ ➡️ ℹ️A suggested workflow, and accompanying scripts, to assemble Single Amplified Genomes (SAGs) from MDA derived Hi/MiSeq (Overlapped) Paired-End Illumina Libraries.
Gene Prediction using MAKER, CEGMA, SNAP, GENEMARK & AUGUSTUS