Toolkit for genome-wide analysis of STRs
The Dockerfile in this container sets up a Docker with GangSTR and STRTools installed. You can pull this image from https://hub.docker.com/r/gymreklab/str-toolkit.
Run the following command to install:
python setup.py install [--prefix=PREFIX]
to install locally, set
--prefix=$HOME and ensure
$HOME is on your
STRTools includes the following tools.
- dumpSTR: a tool for filtering VCF files with STR genotypes (from HipSTR or GangSTR)
- plinkSTR: a tool for performing STR association studies
<command> --help to see a full set of options.
See the README in each subidrectory for usage details.