Course website for CSE Spring 2018
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README.md
cse185-spring18-clickers.md
cse185-spring18-final-projects.md
cse185-spring18-labs.md
cse185-spring18-syllabus.md

README.md

cse185-spring18

Course website for CSE 185 Spring 2018

Syllabus

IClicker policy

Labs

Final projects

CSE185 Slack

Week Date Topic Assignment Link Slides
1 04/02/2018 Lab 1: What causes antibiotic resistance?
NGS, sequence alignment, variant calling
Part I PDF
Lab 1 Github
Week 1 Reading
Week 1 - Monday
Week 1 - Wednesday
Bonus slides - short read alignment
2 04/09/2018 Lab 2: I got vaccinated, why did I get the flu?!
More NGS, error control
Lab 2 Github
Week 2 Reading
Week 2 - Monday
Week 2 - Wednesday
3 04/16/2018 Lab 3: So where do all those reference genomes come from, anyway?
Genome assembly
Lab 3 Github
Week 3 Reading
Week 3 - Monday
Week 3 - Wednesday
4 04/23/2018 Lab 4: Why don’t snakes have legs?
Comparative genomics, RNA-seq
Lab 4 Github
Week 4 Reading
Week 4 - Monday
Week 4 - Wednesday
5 04/30/2018 Lab 5: What color should my eyes be?
GWAS, big data
Lab 5 Github
Week 5 Reading
Week 5 - Monday
Week 5 - Wednesday
6 05/07/2018 Lab 6: CSI Proteomics
Proteomics
Lab 6 Github
Week 6 Reading
Week 6 - Monday
Week 6 - Wednesday
Week 6 - Wednesday audio+slides (youtube)
7 05/14/2018 Bioinformatics in the real world
Primary literature review, software installation, data access
Literature Review Github Week 7 - Wednesday
8 05/21/2018 Independent Projects Final Projects Github Week 8 - Monday
Week 8 - Wednesday
9 05/28/2018 Independent Projects
10 06/04/2018 Independent Projects