The goal of portalDS is to apply “dynamic stability” (Ushio et al. 2018) to the long-term rodent time series at Portal, to test whether this indicator of whole-ecosystem change predicts or lines up with abrupt community shifts.
This project is set up as an R package that implements functions for computing “dynamic stability”, mostly following Ben Marwick’s rrtools setup:
maizuru-dynamic-stabilityvignette reproduces the Maizuru Bay analysis from Ushio et al. 2018 as an example.
analysisfolder contains R scripts and objects for the Portal dynamic stability analysis.
figuresfolders contain data, results, and figures for both the Portal and the Maizuru Bay analysis.
You can install the current version of portalDS from GitHub with:
# install.packages("devtools") devtools::install_github("ha0ye/portalDS")