A Fiji plugin to easily visualize OME metadata.
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README.md

OMEVisual

OMEVisual is a Fiji plugin to easily visualize OME metadata.

See also the Wiki page : http://imagej.net/OMEVisual

Please note that :

  • This goal of this plugin is not to implement all the OME features.
  • This plugin makes several strong assumptions about the OME model in order to simplify the interface :
    • Each image contains only one Pixels element.
    • Each TiffData contains only one Plane.
    • Plane and TiffData informations are displayed at the same location without distinction.
  • Any ideas to improve the visualization and/or add OME features is very welcome :
    • The best way is to submit a PR.
    • You can also open an issue and post an OME-TIFF file which contains additional OME features you would like to see added to the plugin.

The plugin has been tested on the following OME sample dataset http://downloads.openmicroscopy.org/images/OME-TIFF/2015-01/bioformats-artificial/multi-channel-4D-series.ome.tif and with an OME TIFF file generated by Micro-Manager.

How to use

  • Open your image in Fiji.
  • Start the plugin with Plugins ► Utilities ► Visualize OME Metadata.
  • A window should open with the metadata in it.

OMEVisual Screenshot

Authors

OMEVisual has been created by Hadrien Mary.

This work started in 2016 at the Gary Brouhard laboratory at the University of McGill.

License

MIT. See LICENSE.txt