New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Add example of importing a VCF with a reference genome #5086

Open
danking opened this Issue Jan 7, 2019 · 1 comment

Comments

Projects
None yet
2 participants
@danking
Copy link
Collaborator

danking commented Jan 7, 2019

https://hail.is/docs/0.2/methods/impex.html#hail.methods.import_vcf should include an example like:

hl.import_vcf('data/example.vcf.gz', reference_genome='GRCh38')

we may need to create a GRCh38 dataset.

@danking danking self-assigned this Jan 7, 2019

@tpoterba

This comment has been minimized.

Copy link
Collaborator

tpoterba commented Jan 7, 2019

just lift over one of the ones there :)

Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment