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[datasets] update gnomAD datasets available via Datasets API/Annotation DB - #11608
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danking
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I spot-checked a few of them, they all looked good. One comment about updating to at least the most recent major version for our example schema.
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danking
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Thank you much, this is a great improvement!
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Not all of the Hail Tables and MatrixTables that are publicly available on the gnomAD downloads page are currently available in the Datasets API/Annotation DB.
This PR makes the following changes to the datasets available via the Hail Datasets API/Annotation DB:
gnomad_genome_sitesTable, versions: 3.1.1, 3.1.2gnomad_hgdp_1kg_subset_denseMatrixTable, version: 3.1.2gnomad_hgdp_1kg_callsetMatrixTable tognomad_hgdp_1kg_subset_dense, version: 3.1gnomad_hgdp_1kg_subset_sparseMatrixTable, version: 3.1.2gnomad_hgdp_1kg_subset_sample_metadataTable, version: 3.1.2gnomad_hgdp_1kg_subset_variant_annotationsTable, version: 3.1.2gnomad_variant_co-occurrenceTable, version: 2.1.1gnomad_pca_variant_loadingsTable, versions: 2.1, 3.1Other general changes:
.rstfiles, for the datasets listed above, for the docshl.experimental.load_datasetto be the most recentgnomad_hgdp_1kg_subset_denseMatrixTable (version 3.1.2)