Skip to content

[query] removes unnecessary serialization in is.hail.rvd.RVD.localSort #13313

New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Merged
merged 1 commit into from
Jul 27, 2023

Conversation

iris-garden
Copy link
Contributor

On the current release (0.2.119), is.hail.rvd.RVD.localSort attempts to serialize an entire is.hail.rvd.RVD object when called, which causes some operations, like reading a set of VCF files, to fail. That particular operation no longer fails due to some combination of the changes made to reading VCF files in #13206 and #13229, but the serialization could still cause issues if is.hail.rvd.RVD.localSort is called in another context.

See https://hail.zulipchat.com/#narrow/stream/123011-Hail-Query-Dev/topic/Possible.20bug.20in.20Hail.200.2E2.2E119/near/378610151 for more information.

@iris-garden iris-garden force-pushed the query/not-serializable branch from 27a409e to f2b2a68 Compare July 27, 2023 13:54
@iris-garden iris-garden removed the WIP label Jul 27, 2023
@danking danking merged commit c74530d into hail-is:main Jul 27, 2023
@danking danking mentioned this pull request Jul 27, 2023
danking pushed a commit to danking/hail that referenced this pull request Jul 27, 2023
tommyli added a commit to bioinfomethods/seqr-loading-pipelines that referenced this pull request Dec 18, 2023
Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Labels
None yet
Projects
None yet
Development

Successfully merging this pull request may close these issues.

3 participants