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[query] Improve BGzipInputStream.read #8383

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merged 2 commits into from Mar 29, 2020
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tpoterba
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Improves performance of GVCF import significantly:

           Benchmark Name      Ratio     Time 1     Time 2
           --------------      -----     ------     ------
  import_gvcf_force_count      81.2%     68.737     55.833
import_and_transform_gvcf      79.9%     75.692     60.464
----------------------
Harmonic mean: 80.5%
Geometric mean: 80.6%
Arithmetic mean: 80.6%
Median:  80.6%

Stacked on #8382

Improves performance of GVCF import significantly:
```
           Benchmark Name      Ratio     Time 1     Time 2
           --------------      -----     ------     ------
  import_gvcf_force_count      81.2%     68.737     55.833
import_and_transform_gvcf      79.9%     75.692     60.464
----------------------
Harmonic mean: 80.5%
Geometric mean: 80.6%
Arithmetic mean: 80.6%
Median:  80.6%
```
@danking danking merged commit 15b6399 into hail-is:master Mar 29, 2020
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3 participants