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[query] Add ignore_in_sample_allele_frequency flag to hl.de_novo#9549

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danking merged 2 commits intohail-is:mainfrom
tpoterba:de-novo-option
Oct 5, 2020
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[query] Add ignore_in_sample_allele_frequency flag to hl.de_novo#9549
danking merged 2 commits intohail-is:mainfrom
tpoterba:de-novo-option

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@tpoterba
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@tpoterba tpoterba commented Oct 2, 2020

Also take the opportunity to implement the check on pop_frequency_prior
in accordance with our years-old comment.

Also take the opportunity to implement the check on pop_frequency_prior
in accordance with our years-old comment.
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tpoterba commented Oct 2, 2020

@johnc1231
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Failing a local backend test

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tpoterba commented Oct 5, 2020

fixed the local backend test (had to do with the HailUserException not getting extracted properly in lowered execution, which I'm punting on right now).

Docs build is now failing, which I think is a problem in main.

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Ah, sorry about that. I'll fix the HailUserException thing on local backend in a separate PR.

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Sorry, meant to approve when I commented earlier this morning

@danking danking merged commit 27bf7ee into hail-is:main Oct 5, 2020
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#9569 Fixes the HailUserException error you encountered. LocalBackend now correctly handles HailUserExceptions

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3 participants