Merge branch 'master' of https://github.com/ScottPDickinson/PredictDB…

…Pipeline
hakyimlab · Nov 8, 2016 · 664c191 · 664c191
2 parents fdc6a2c + 970d0a7
commit 664c191
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diff --git a/README.md b/README.md
@@ -20,6 +20,6 @@ PrediXcan.
 With some modifications, this pipeline can be extended to analyze other
 studies which have genotype and expression data.
 
-(See our wiki)[https://github.com/hakyimlab/PredictDBPipeline/wiki] for
+[See our wiki](https://github.com/hakyimlab/PredictDBPipeline/wiki) for
 a tutorial with example files and a detailed description of these
 scripts.
diff --git a/joblogs/example/post_process.py b/joblogs/example/post_process.py
@@ -20,5 +20,5 @@
 
 for i, study in enumerate(STUDY_NAMES):
     print("Filtering " + study + " on significance.")
-    subprocess.call(['../../scripts/filter_on_significance.R', DB_FILES[i],
+    subprocess.call(['Rscript', '../../scripts/filter_on_significance.R', DB_FILES[i],
         INTER_DIR + GENE_ANN_DIR + GENE_ANNOT_INTER2, FILTERED_DB_FILES[i]])