MetaPathways v2.5 supplementary material

Source code of the supplementary material of the Oxford Bioinformatics MetaPathways v2.5 paper:

• Kishori M. Konwar, Niels W. Hanson, Maya P. Bhatia, Dongjae Kim, Shang-Ju Wu, Aria S. Hahn, Connor Morgan-Lang, Hiu Kan Cheung, Steven J. Hallam. MetaPathways v2.5: Quantitative functional, taxonomic, and usability improvements, Bioinformatics. June 2015. doi:10.1093/bioinformatics/btv361

More information on setup and running MetaPathways v2.5 can be found directory on the MetaPathways2 GitHub repository.

For a detailed description of the analysis, please see mp_2_5_supplement.md.

The repo contains the following files and directories:

• figures/: Directory contining the file figure files used in the manuscript
• mp_2_5_supplement_files/: Directory of resource files for the RMarkdown document
• scratch/: Directory with older R code
• mp_2_5_supplement.Rmd: RMarkdown file containing the source code the analysis
• mp_2_5_supplement.md: Markdown-compiled version of the analysis
• mp_2_5_supplement.html: HTML-compiled version of the analysis