The seqtime R package provides functions to analyse sequencing data time series and to simulate community dynamics.
To install the development version in R, use
library(devtools) install_github("hallucigenia-sparsa/seqtime") library(seqtime)
Contributions are very welcome:
Kindly cite this work as follows: Karoline Faust, Franziska Bauchinger, Béatrice Laroche, Sophie de Buyl, Leo Lahti, Alex D Washburne, Didier Gonze, Stefanie Widder, "Signatures of ecological processes in microbial community time series", Microbiome (2018). The seqtime R package. URL: https://github.com/hallucigenia-sparsa/seqtime