This is an attempt to integrate the OWL visualization VOWL into WebProtégé. We believe this could be a valuable extension because VOWL received positive feedback as a comprehensive and understandable ontology visualization.
Where can I find the specification and a demo?
You can find everything at http://vowl.visualdataweb.org/
eXtreme Design for WebProtégé (XDP) is an extension to standard WebProtégé supporting the use of Ontology Design Patterns (ODPs) and the eXtreme Design ontology engineering method. In order to run XDP you will, in addition to the codebase held in this repository, need to run an instance of XdpServices that the extension uses to search and browse for ODPs, and return ODP metadata and OWL representations. Additionally, the XdpShared package holding shared data classes used for communication needs to be installed in the local Maven repository in order for either of the two projects to build.
By default XdpServices runs on port 7777, and by default XDP looks for it on localhost at that port. If you run XdpServices on another machine or port, please update
src/main/resources/edu/stanford/bmir/protege/web/server/xd/XdpService.properties to reflect this.
What is WebProtégé?
WebProtégé is a free, open source collaborative ontology development environment for the Web.
It provides the following features:
- Support for editing OWL 2 ontologies
- A default simple editing interface, which provides access to commonly used OWL constructs
- Full change tracking and revision history
- Collaboration tools such as, sharing and permissions, threaded notes and discussions, watches and email notifications
- Customizable user interface
- Customizable Web forms for application/domain specific editing
- Support for editing OBO ontologies
- Multiple file formats for upload and download of ontologies (supported formats: RDF/XML, Turtle, OWL/XML, OBO, and others)
WebProtégé runs as a Web application. End users access it through their Web browsers. They do not need to download nor install any software. We encourage end users to use our hosted solution at: http://webprotege.stanford.edu
This README file
This README file describes how to build and run WebProtege. This file is intended for developers or administrators who want to use WebProtege locally.
If you have downloaded the webprotege war file from GitHub, and would like to deploy it on your own server, please follow the instructions at: http://protegewiki.stanford.edu/wiki/WebProtegeAdminGuide
If you would like to build WebProtege yourself, or if you are developing a plugin for WebProtege, please read the information below.
- mongoDB URL: http://www.mongodb.org/
You also need Java (1.6 or later), Maven, and a servlet container, such as tomcat.
Building WebProtege for Use on Local Host
Open a terminal in the webprotege directory and type
WebProtege will be built as a .war file in the
target directory. By default, the WebProtege data directory
(where WebProtege stores project data etc.) is
/data/webprotege. If you want to change this location you
can specify a different location at build time using
-Ddata.directory=<YOURPATH>. For example,
mvn -Ddata.directory=/mypath/mydirectory package
or on Windows
mvn -Ddata.directory=C:\mypath\mydirectory package
data.directory is a configuration property. You may want to change some of the other WebProtege configuration
properties. You can do this when building by specifying the relevant property as a command line argument as above.
For a detailed list of supported properties please see
DevMode can be started with:
Note that, if you need to override any default property values then you must specify these as arguments (otherwise default values will be used). For example,
mvn -Ddata.directory=/mypath/mydirectory gwt:run
WebProtege can also be deployed into into tomcat by copying the .war file to the webapps folder in your tomcat installation.
Note: you need mongodb to run WebProtege. Please make sure mongodb is running. Find more information at: http://protegewiki.stanford.edu/wiki/WebProtegeAdminGuide#Install_mongoDB
Building WebProtege for Deployment on your Servers
The above steps build WebProtege for local testing on your machine (localhost). For deployment to another machine for
production use you should active the
deployment profile. To do this include
-Pdeployment as an argument.
You MUST also include a value for the property
application.host, which is the domain name where you will deploy
WebProtege. If you do not include this property value the build will fail with an error message. For example,
mvn -Pdeployment -Dapplication.host=mycompany.com package
WebProtege can be configured and customized in different ways, e.g. UI layout, email, etc. Please find more information here: http://protegewiki.stanford.edu/wiki/WebProtegeAdminGuide#Configuration_and_Customization_.28optional.29
More documentation at: http://protegewiki.stanford.edu/wiki/WebProtege