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TensorFlow Deconvolution for Microscopy Data
Microscopy Image Cytometry Toolkit
Keep Track of Experimental Workflows
Library of Stan Models for Survival Analysis
Probabilistic HLA typing
Parallel Genomic Analysis Toolkit
Ppx_deriving plugin for generating command line interfaces from types (Cmdliner.Term.t)
Interactive in-browser track viewer
Generate Shell Phrases In OCaml
Computer vision utilities
Enrichment-methods for Scala collections (Iterators, Iterables, Arrays)
Libraries for console/file I/O, processing/formatting sizes in bytes, etc.
An unsupervised hierarchical gating
Scala convenience-wrapper for java.nio.file.Path
type-classes for structural manipulation of algebraic data types
Math and statistics utilities
SBT plugins for publishing to Maven Central, shading and managing dependencies, reporting to Coveralls from TravisCI, and more
giter8 template for the hammerlab/sbt-parent SBT plugin
giter8 template for hammerlab projects using the hammerlab/sbt-parent `base` plugin
Human Primary T cells: A Practical Guide
Helpers for creating command-line applications
Library for representing and working with sets of genomic-sequencing reads, e.g. BAM files.
Generate genomic-coverage-depth histograms using Apache Spark
Load genomic BAM files using Apache Spark
Library for representing and working with genomic-sequencing reads.
A genomics processing engine and specialized file format built using Apache Avro, Apache Spark and Parquet. Apache 2 licensed.
Miscellaneous functionality for manipulating Apache Spark RDDs.
Utilities for representing genomic loci and reference-genomes
Utilities for representing and working with reference genomes
Utilities for working with genomic bases, cigar strings, and phred scores.