@hammerlab

Hammer Lab

We're a lab working to understand and improve the immune response to cancer

Pinned repositories

  1. flowdec

    TensorFlow Deconvolution for Microscopy Data

    Jupyter Notebook 18 4

  2. cytokit

    Microscopy Image Cytometry Toolkit

    Jupyter Notebook 1 1

  3. ketrew

    Keep Track of Experimental Workflows

    OCaml 64 6

  4. survivalstan

    Library of Stan Models for Survival Analysis

    Jupyter Notebook 51 11

  5. prohlatype

    Probabilistic HLA typing

    OCaml 22 2

  6. pageant

    Parallel Genomic Analysis Toolkit

    10 3

  • Generate Shell Phrases In OCaml

    OCaml 19 Apache-2.0 Updated Jul 21, 2018
  • Microscopy Image Cytometry Toolkit

    Jupyter Notebook 1 1 Apache-2.0 1 issue needs help Updated Jul 13, 2018
  • Interactive in-browser track viewer

    JavaScript 209 53 Apache-2.0 Updated Jul 12, 2018
  • Computer vision utilities

    Python Updated Jul 6, 2018
  • SBT plugins for publishing to Maven Central, shading and managing dependencies, reporting to Coveralls from TravisCI, and more

    Scala 7 1 Apache-2.0 Updated Jul 2, 2018
  • Math and statistics utilities

    Scala 2 1 Apache-2.0 Updated Jul 2, 2018
  • Libraries for console/file I/O, processing/formatting sizes in bytes, etc.

    Scala 2 1 Apache-2.0 Updated Jul 2, 2018
  • TensorFlow Deconvolution for Microscopy Data

    Jupyter Notebook 18 4 Apache-2.0 Updated Jun 25, 2018
  • giter8 template for the hammerlab/sbt-parent SBT plugin

    Scala Updated Jun 21, 2018
  • giter8 template for hammerlab projects using the hammerlab/sbt-parent `base` plugin

    Scala Updated Jun 21, 2018
  • Parallel Genomic Analysis Toolkit

    10 3 Updated Jun 17, 2018
  • Helpers for creating command-line applications

    Scala 1 1 Apache-2.0 Updated Jun 17, 2018
  • Library for representing and working with sets of genomic-sequencing reads, e.g. BAM files.

    Scala 1 Apache-2.0 Updated Jun 17, 2018
  • Generate genomic-coverage-depth histograms using Apache Spark

    Scala 2 1 Apache-2.0 Updated Jun 17, 2018
  • Load genomic BAM files using Apache Spark

    Scala 16 3 Apache-2.0 Updated Jun 17, 2018
  • Library for representing and working with genomic-sequencing reads.

    Scala 1 1 Apache-2.0 Updated Jun 17, 2018
  • A genomics processing engine and specialized file format built using Apache Avro, Apache Spark and Parquet. Apache 2 licensed.

    Scala 1 265 Updated Jun 17, 2018
  • Miscellaneous functionality for manipulating Apache Spark RDDs.

    Scala 13 5 Updated Jun 17, 2018
  • Utilities for representing genomic loci and reference-genomes

    Scala 1 1 Apache-2.0 Updated Jun 16, 2018
  • Utilities for representing and working with reference genomes

    Scala 1 Apache-2.0 Updated Jun 16, 2018
  • Utilities for working with genomic bases, cigar strings, and phred scores.

    Scala 1 Apache-2.0 Updated Jun 16, 2018
  • Utilities for writing tests that use Apache Spark.

    Scala 10 2 Apache-2.0 Updated Jun 16, 2018
  • Low-level helpers for Spark libraries and tests

    Scala 6 3 Apache-2.0 Updated Jun 16, 2018
  • Enrichment-methods for Scala collections (Iterators, Iterables, Arrays)

    Scala 6 1 Apache-2.0 Updated Jun 13, 2018
  • Human Primary T cells: A Practical Guide

    Jupyter Notebook 3 Apache-2.0 Updated Jun 10, 2018
  • Utilities for analyzing mutations and neoepitopes in patient cohorts

    Python 12 2 Apache-2.0 Updated Jun 7, 2018
  • type-classes for structural manipulation of algebraic data types

    Scala 13 1 Apache-2.0 Updated Jun 6, 2018
  • Unit-testing utilities

    Scala 1 Apache-2.0 Updated Jun 6, 2018
  • Probabilistic HLA typing

    OCaml 22 2 Apache-2.0 Updated Jun 4, 2018
  • Library of Stan Models for Survival Analysis

    Jupyter Notebook 51 11 Apache-2.0 Updated Mar 23, 2018